Wall clock time and date at job start Tue Mar 31 2020 21:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 108.57573 * 2 1 4 4 O 1.42101 * 108.58171 * 228.97435 * 2 1 3 5 5 C 1.81402 * 101.92204 * 114.48652 * 2 1 3 6 6 H 1.09005 * 112.90513 * 311.25353 * 5 2 1 7 7 C 1.53777 * 113.61126 * 82.50334 * 5 2 1 8 8 C 1.53780 * 87.08032 * 139.98434 * 7 5 2 9 9 H 1.08996 * 113.69203 * 89.12526 * 8 7 5 10 10 O 1.45196 * 113.61418 * 220.01868 * 8 7 5 11 11 C 1.34235 * 117.00319 * 247.49371 * 10 8 7 12 12 O 1.20824 * 119.99561 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00176 * 180.02562 * 11 10 8 14 14 C 1.50697 * 109.47024 * 180.02562 * 13 11 10 15 15 C 1.37635 * 120.13029 * 265.00398 * 14 13 11 16 16 C 1.38616 * 120.25180 * 180.29925 * 15 14 13 17 17 C 1.38657 * 120.49769 * 359.43991 * 16 15 14 18 18 C 1.37599 * 120.24996 * 0.55619 * 17 16 15 19 19 C 1.40698 * 120.12726 * 85.02044 * 14 13 11 20 20 C 1.41401 * 120.24306 * 359.95711 * 19 14 13 21 21 H 1.07996 * 120.00140 * 329.78968 * 20 19 14 22 22 C 1.39943 * 119.99611 * 149.79577 * 20 19 14 23 23 N 1.30828 * 120.00177 * 162.08912 * 22 20 19 24 24 Si 1.86803 * 120.00186 * 342.08044 * 22 20 19 25 25 H 1.48499 * 109.47049 * 95.39710 * 24 22 20 26 26 H 1.48502 * 109.46957 * 215.39592 * 24 22 20 27 27 H 1.48500 * 109.46884 * 335.39299 * 24 22 20 28 28 C 1.53776 * 113.61643 * 180.02562 * 5 2 1 29 29 H 1.08992 * 109.47053 * 305.51375 * 1 2 3 30 30 H 1.09003 * 109.47166 * 65.51379 * 1 2 3 31 31 H 1.09001 * 109.46869 * 185.51155 * 1 2 3 32 32 H 1.08992 * 113.61720 * 25.43547 * 7 5 2 33 33 H 1.09006 * 113.61568 * 254.52791 * 7 5 2 34 34 H 1.08999 * 109.47141 * 60.00043 * 13 11 10 35 35 H 1.09003 * 109.46955 * 300.00164 * 13 11 10 36 36 H 1.08001 * 119.87405 * 0.02562 * 15 14 13 37 37 H 1.07997 * 119.74655 * 179.69995 * 16 15 14 38 38 H 1.07996 * 119.87456 * 180.30205 * 17 16 15 39 39 H 1.07999 * 120.12771 * 179.75037 * 18 17 16 40 40 H 0.96989 * 120.00516 * 179.97438 * 23 22 20 41 41 H 1.08994 * 113.61747 * 105.46925 * 28 5 2 42 42 H 1.09003 * 113.68849 * 334.57928 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2669 -0.8841 -1.0161 5 6 2.1888 -0.7357 1.6153 6 1 1.6286 -0.2774 2.4304 7 6 2.1362 -2.2725 1.6192 8 6 3.3796 -2.2344 2.5233 9 1 3.1464 -2.1861 3.5869 10 8 4.3603 -3.2573 2.2069 11 6 4.5479 -4.2246 3.1185 12 8 3.9138 -4.2164 4.1470 13 6 5.5500 -5.3199 2.8597 14 6 5.5673 -6.2713 4.0283 15 6 6.4932 -6.1131 5.0343 16 6 6.5154 -6.9905 6.1072 17 6 5.5999 -8.0289 6.1862 18 6 4.6653 -8.2061 5.1920 19 6 4.6372 -7.3248 4.0950 20 6 3.6809 -7.4968 3.0676 21 1 3.3161 -6.6401 2.5206 22 6 3.2073 -8.7772 2.7598 23 7 2.0981 -8.9186 2.0808 24 14 4.1591 -10.2844 3.3183 25 1 3.5952 -10.7791 4.5999 26 1 4.0518 -11.3477 2.2871 27 1 5.5868 -9.9247 3.5117 28 6 3.6946 -0.8643 1.8992 29 1 -0.3633 0.5969 0.8364 30 1 -0.3634 0.4260 -0.9353 31 1 -0.3633 -1.0229 0.0987 32 1 2.3205 -2.7183 0.6419 33 1 1.2515 -2.6779 2.1104 34 1 6.5405 -4.8833 2.7315 35 1 5.2715 -5.8608 1.9553 36 1 7.2081 -5.3051 4.9853 37 1 7.2486 -6.8617 6.8896 38 1 5.6232 -8.7036 7.0291 39 1 3.9557 -9.0179 5.2535 40 1 1.7700 -9.8059 1.8671 41 1 4.0678 -0.1331 2.6162 42 1 4.3064 -0.9248 0.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873632796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:35 Heat of formation + Delta-G solvation = -112.704308 kcal Electronic energy + Delta-G solvation = -26769.684646 eV Core-core repulsion = 22807.940571 eV Total energy + Delta-G solvation = -3961.744075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34418 -38.64014 -37.64823 -37.19270 -36.27001 -35.32643 -33.64278 -32.01073 -30.38533 -29.95145 -27.61189 -26.16042 -25.90287 -24.86492 -21.76790 -21.26315 -20.21897 -19.54003 -19.00411 -17.79620 -17.40829 -16.83152 -16.49101 -16.24481 -15.89446 -15.71651 -15.49917 -15.05807 -14.47426 -14.11978 -13.77232 -13.65938 -13.52129 -13.12092 -13.00337 -12.85660 -12.73376 -12.40431 -12.31362 -12.22212 -12.12702 -11.96327 -11.65214 -11.56756 -11.43831 -11.26638 -11.13349 -10.86170 -10.79754 -10.42575 -10.29169 -10.13657 -9.82777 -9.75871 -9.61489 -9.17006 -7.67257 -7.58045 -6.98501 -4.54261 -0.30248 2.39582 2.44012 2.66373 2.84114 3.09171 3.12446 3.21642 3.29906 3.31824 3.54295 3.91515 3.95461 4.05904 4.39873 4.44715 4.47668 4.51954 4.67583 5.03568 5.23850 5.32176 5.32760 5.38000 5.50413 5.56287 5.60119 5.73857 5.80505 6.03247 6.06130 6.14306 6.25704 6.51766 6.66748 6.87674 6.91948 7.14818 7.38146 7.59930 7.69108 7.84034 8.08033 8.28840 8.38836 8.61369 8.76389 10.03437 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.002850 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.722393 B = 9822.468250 C =10958.921237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.430 3.570 3 O -0.941 6.941 4 O -0.930 6.930 5 C -0.606 4.606 6 H 0.155 0.845 7 C -0.124 4.124 8 C 0.072 3.928 9 H 0.117 0.883 10 O -0.351 6.351 11 C 0.461 3.539 12 O -0.493 6.493 13 C -0.046 4.046 14 C -0.181 4.181 15 C -0.064 4.064 16 C -0.243 4.243 17 C -0.077 4.077 18 C -0.233 4.233 19 C 0.110 3.890 20 C -0.446 4.446 21 H 0.089 0.911 22 C 0.086 3.914 23 N -0.806 5.806 24 Si 0.910 3.090 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.243 1.243 28 C -0.100 4.100 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.285 0.715 41 H 0.096 0.904 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 13.847 -2.759 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.611 3.389 3 O -0.938 6.938 4 O -0.927 6.927 5 C -0.715 4.715 6 H 0.173 0.827 7 C -0.162 4.162 8 C 0.016 3.984 9 H 0.135 0.865 10 O -0.269 6.269 11 C 0.304 3.696 12 O -0.378 6.378 13 C -0.084 4.084 14 C -0.182 4.182 15 C -0.082 4.082 16 C -0.263 4.263 17 C -0.095 4.095 18 C -0.252 4.252 19 C 0.107 3.893 20 C -0.474 4.474 21 H 0.107 0.893 22 C -0.134 4.134 23 N -0.430 5.430 24 Si 0.737 3.263 25 H -0.197 1.197 26 H -0.218 1.218 27 H -0.166 1.166 28 C -0.139 4.139 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.657 14.066 -3.264 14.534 hybrid contribution -0.721 -0.881 1.047 1.547 sum -2.378 13.185 -2.216 13.580 Atomic orbital electron populations 1.30237 1.26714 1.11890 1.11587 1.07636 0.78416 0.75471 0.77362 1.93589 1.79247 1.34456 1.86538 1.93627 1.79037 1.66944 1.53088 1.31539 1.07352 1.08965 1.23638 0.82737 1.23262 1.00174 0.89137 1.03658 1.24104 0.87832 0.85838 1.00624 0.86507 1.86669 1.56676 1.35605 1.47965 1.24407 0.82735 0.81407 0.81086 1.90630 1.46062 1.73916 1.27159 1.20023 0.95794 0.91504 1.01035 1.19056 1.00564 1.01252 0.97330 1.20461 0.97166 0.96972 0.93649 1.20343 1.04185 1.00876 1.00863 1.20629 0.95015 0.96733 0.97120 1.21011 1.03195 1.04073 0.96878 1.17488 0.89773 0.90332 0.91682 1.19430 1.17801 0.94657 1.15492 0.89343 1.26159 0.93365 1.01208 0.92622 1.69691 1.16652 1.26410 1.30210 0.86328 0.82975 0.79330 0.77683 1.19726 1.21831 1.16590 1.22908 0.90614 0.96953 1.03396 0.85397 0.85330 0.84987 0.86403 0.88693 0.88980 0.86905 0.88877 0.88855 0.88884 0.88201 0.90436 0.88573 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.26 10.62 101.05 1.07 -2.18 16 2 S 2.43 20.41 5.34 -107.50 -0.57 19.84 16 3 O -0.94 -10.87 18.10 -57.83 -1.05 -11.92 16 4 O -0.93 -11.52 17.19 -57.83 -0.99 -12.51 16 5 C -0.61 -4.85 4.17 -25.92 -0.11 -4.95 16 6 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.12 -1.36 7.46 -25.92 -0.19 -1.56 16 8 C 0.07 0.97 4.25 -25.90 -0.11 0.86 16 9 H 0.12 1.61 7.07 -51.93 -0.37 1.24 16 10 O -0.35 -5.83 10.24 -39.27 -0.40 -6.23 16 11 C 0.46 8.98 7.57 36.01 0.27 9.25 16 12 O -0.49 -11.07 15.21 -18.75 -0.29 -11.36 16 13 C -0.05 -0.88 5.31 -29.04 -0.15 -1.03 16 14 C -0.18 -4.04 4.43 -103.92 -0.46 -4.50 16 15 C -0.06 -1.34 9.66 -39.66 -0.38 -1.72 16 16 C -0.24 -5.07 10.05 -39.29 -0.39 -5.47 16 17 C -0.08 -1.68 10.02 -39.66 -0.40 -2.07 16 18 C -0.23 -5.64 7.17 -38.87 -0.28 -5.91 16 19 C 0.11 2.75 5.10 -106.82 -0.54 2.21 16 20 C -0.45 -11.69 8.55 -37.74 -0.32 -12.01 16 21 H 0.09 2.43 7.00 -52.49 -0.37 2.06 16 22 C 0.09 2.20 5.41 -17.34 -0.09 2.10 16 23 N -0.81 -21.01 13.93 55.55 0.77 -20.24 16 24 Si 0.91 20.42 24.52 -169.99 -4.17 16.25 16 25 H -0.27 -5.97 6.71 56.52 0.38 -5.59 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.24 -5.54 6.86 56.52 0.39 -5.16 16 28 C -0.10 -1.01 7.51 -25.90 -0.19 -1.20 16 29 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.12 1.38 7.36 -51.93 -0.38 1.00 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 35 H 0.11 2.16 7.13 -51.93 -0.37 1.79 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.10 2.41 4.77 -52.49 -0.25 2.16 16 40 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -34.88 363.29 -9.06 -43.95 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.55 Total: 4.94 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.29 Total: -28.20 kcal Atomic # 7 Polarization: -21.01 SS G_CDS: 0.77 Total: -20.24 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -2.73 Total: -42.02 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.25 kcal Atomic # 16 Polarization: 20.41 SS G_CDS: -0.57 Total: 19.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.88 -9.06 -43.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873632796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.758 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds