Wall clock time and date at job start Tue Mar 31 2020 21:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 108.57573 * 2 1 4 4 O 1.42101 * 108.58171 * 228.97435 * 2 1 3 5 5 C 1.81402 * 101.92204 * 114.48652 * 2 1 3 6 6 H 1.09005 * 112.90513 * 311.25353 * 5 2 1 7 7 C 1.53777 * 113.61126 * 82.50334 * 5 2 1 8 8 C 1.53780 * 87.08032 * 139.98434 * 7 5 2 9 9 H 1.08996 * 113.69203 * 89.12526 * 8 7 5 10 10 O 1.45196 * 113.61418 * 220.01868 * 8 7 5 11 11 C 1.34235 * 117.00319 * 247.49371 * 10 8 7 12 12 O 1.20824 * 119.99561 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00176 * 180.02562 * 11 10 8 14 14 C 1.50697 * 109.47024 * 180.02562 * 13 11 10 15 15 C 1.37635 * 120.13029 * 265.00398 * 14 13 11 16 16 C 1.38616 * 120.25180 * 180.29925 * 15 14 13 17 17 C 1.38657 * 120.49769 * 359.43991 * 16 15 14 18 18 C 1.37599 * 120.24996 * 0.55619 * 17 16 15 19 19 C 1.40698 * 120.12726 * 85.02044 * 14 13 11 20 20 C 1.41401 * 120.24306 * 359.95711 * 19 14 13 21 21 H 1.07996 * 120.00140 * 329.78968 * 20 19 14 22 22 C 1.39943 * 119.99611 * 149.79577 * 20 19 14 23 23 N 1.30828 * 120.00177 * 162.08912 * 22 20 19 24 24 Si 1.86803 * 120.00186 * 342.08044 * 22 20 19 25 25 H 1.48499 * 109.47049 * 95.39710 * 24 22 20 26 26 H 1.48502 * 109.46957 * 215.39592 * 24 22 20 27 27 H 1.48500 * 109.46884 * 335.39299 * 24 22 20 28 28 C 1.53776 * 113.61643 * 180.02562 * 5 2 1 29 29 H 1.08992 * 109.47053 * 305.51375 * 1 2 3 30 30 H 1.09003 * 109.47166 * 65.51379 * 1 2 3 31 31 H 1.09001 * 109.46869 * 185.51155 * 1 2 3 32 32 H 1.08992 * 113.61720 * 25.43547 * 7 5 2 33 33 H 1.09006 * 113.61568 * 254.52791 * 7 5 2 34 34 H 1.08999 * 109.47141 * 60.00043 * 13 11 10 35 35 H 1.09003 * 109.46955 * 300.00164 * 13 11 10 36 36 H 1.08001 * 119.87405 * 0.02562 * 15 14 13 37 37 H 1.07997 * 119.74655 * 179.69995 * 16 15 14 38 38 H 1.07996 * 119.87456 * 180.30205 * 17 16 15 39 39 H 1.07999 * 120.12771 * 179.75037 * 18 17 16 40 40 H 0.96989 * 120.00516 * 179.97438 * 23 22 20 41 41 H 1.08994 * 113.61747 * 105.46925 * 28 5 2 42 42 H 1.09003 * 113.68849 * 334.57928 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2669 -0.8841 -1.0161 5 6 2.1888 -0.7357 1.6153 6 1 1.6286 -0.2774 2.4304 7 6 2.1362 -2.2725 1.6192 8 6 3.3796 -2.2344 2.5233 9 1 3.1464 -2.1861 3.5869 10 8 4.3603 -3.2573 2.2069 11 6 4.5479 -4.2246 3.1185 12 8 3.9138 -4.2164 4.1470 13 6 5.5500 -5.3199 2.8597 14 6 5.5673 -6.2713 4.0283 15 6 6.4932 -6.1131 5.0343 16 6 6.5154 -6.9905 6.1072 17 6 5.5999 -8.0289 6.1862 18 6 4.6653 -8.2061 5.1920 19 6 4.6372 -7.3248 4.0950 20 6 3.6809 -7.4968 3.0676 21 1 3.3161 -6.6401 2.5206 22 6 3.2073 -8.7772 2.7598 23 7 2.0981 -8.9186 2.0808 24 14 4.1591 -10.2844 3.3183 25 1 3.5952 -10.7791 4.5999 26 1 4.0518 -11.3477 2.2871 27 1 5.5868 -9.9247 3.5117 28 6 3.6946 -0.8643 1.8992 29 1 -0.3633 0.5969 0.8364 30 1 -0.3634 0.4260 -0.9353 31 1 -0.3633 -1.0229 0.0987 32 1 2.3205 -2.7183 0.6419 33 1 1.2515 -2.6779 2.1104 34 1 6.5405 -4.8833 2.7315 35 1 5.2715 -5.8608 1.9553 36 1 7.2081 -5.3051 4.9853 37 1 7.2486 -6.8617 6.8896 38 1 5.6232 -8.7036 7.0291 39 1 3.9557 -9.0179 5.2535 40 1 1.7700 -9.8059 1.8671 41 1 4.0678 -0.1331 2.6162 42 1 4.3064 -0.9248 0.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873632796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:34 Heat of formation + Delta-G solvation = -136.397870 kcal Electronic energy + Delta-G solvation = -26770.712076 eV Core-core repulsion = 22807.940571 eV Total energy + Delta-G solvation = -3962.771505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68965 -39.98307 -39.12176 -38.01130 -37.07683 -36.70259 -35.50407 -33.65845 -32.18917 -30.41148 -29.16965 -27.14181 -27.00499 -26.46789 -23.36100 -22.87539 -21.21787 -21.15059 -19.77751 -19.27061 -18.98265 -17.97965 -17.57991 -17.30193 -17.18053 -16.89957 -16.56503 -16.22688 -16.13187 -15.76043 -15.46906 -14.64269 -14.39583 -14.17216 -14.01134 -13.92915 -13.87914 -13.77172 -13.74253 -13.22845 -13.17383 -13.05959 -13.03200 -12.87277 -12.71466 -12.63992 -12.52369 -12.45415 -12.01008 -11.92752 -11.55273 -11.44639 -11.42483 -11.25659 -11.11581 -10.98002 -9.42178 -9.35328 -8.87903 -6.47820 -0.96168 0.72447 0.88822 1.27795 1.31610 1.40202 1.49997 1.77171 1.91038 2.13632 2.51142 2.64057 2.82413 3.13975 3.38115 3.43585 3.52132 3.74934 3.91514 4.11442 4.13866 4.24081 4.26126 4.39485 4.45416 4.46982 4.52988 4.56679 4.66269 4.70916 4.74459 4.89129 4.91756 4.98465 5.00872 5.14348 5.35176 5.51379 5.66269 5.84716 5.92566 6.02990 6.26651 6.43466 6.76527 6.87716 6.89742 8.19842 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.002850 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.722393 B = 9822.468250 C =10958.921237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.435 3.565 3 O -0.975 6.975 4 O -0.979 6.979 5 C -0.584 4.584 6 H 0.195 0.805 7 C -0.131 4.131 8 C 0.047 3.953 9 H 0.112 0.888 10 O -0.353 6.353 11 C 0.466 3.534 12 O -0.530 6.530 13 C -0.050 4.050 14 C -0.185 4.185 15 C -0.073 4.073 16 C -0.230 4.230 17 C -0.086 4.086 18 C -0.255 4.255 19 C 0.086 3.914 20 C -0.473 4.473 21 H 0.057 0.943 22 C 0.050 3.950 23 N -0.848 5.848 24 Si 0.962 3.038 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.250 1.250 28 C -0.103 4.103 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.292 0.708 41 H 0.119 0.881 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 15.107 -1.212 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.621 3.379 3 O -0.972 6.972 4 O -0.976 6.976 5 C -0.693 4.693 6 H 0.212 0.788 7 C -0.170 4.170 8 C -0.008 4.008 9 H 0.130 0.870 10 O -0.270 6.270 11 C 0.311 3.689 12 O -0.418 6.418 13 C -0.087 4.087 14 C -0.186 4.186 15 C -0.091 4.091 16 C -0.249 4.249 17 C -0.104 4.104 18 C -0.274 4.274 19 C 0.083 3.917 20 C -0.503 4.503 21 H 0.075 0.925 22 C -0.164 4.164 23 N -0.475 5.475 24 Si 0.786 3.214 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.173 1.173 28 C -0.141 4.141 29 H 0.177 0.823 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.855 15.341 -1.739 15.463 hybrid contribution -0.899 -1.093 0.675 1.568 sum -1.754 14.249 -1.064 14.395 Atomic orbital electron populations 1.30072 1.21387 1.13734 1.13727 1.07196 0.80227 0.73931 0.76540 1.93546 1.81199 1.35668 1.86829 1.93567 1.81236 1.67775 1.55067 1.31503 1.06304 1.06560 1.24894 0.78790 1.23269 0.99466 0.91714 1.02501 1.24622 0.88561 0.86517 1.01129 0.87010 1.86635 1.57591 1.35739 1.47050 1.24345 0.82138 0.81707 0.80745 1.90601 1.47465 1.74995 1.28772 1.20092 0.97906 0.91229 0.99492 1.19456 0.99910 1.00665 0.98568 1.20926 0.97223 0.97929 0.92982 1.20890 1.03574 0.99293 1.01147 1.21018 0.94454 0.97680 0.97292 1.21155 1.04286 1.04301 0.97684 1.17719 0.90360 0.91894 0.91708 1.19355 1.19819 0.94209 1.16869 0.92480 1.26767 0.93884 1.03124 0.92669 1.69723 1.18003 1.27302 1.32428 0.85535 0.81236 0.76875 0.77748 1.19135 1.20545 1.17313 1.22994 0.92360 0.95205 1.03495 0.82331 0.84132 0.83553 0.87728 0.87757 0.85013 0.87835 0.85270 0.85179 0.85885 0.88945 0.89760 0.86310 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.28 10.62 113.37 1.20 -3.08 16 2 S 2.43 38.25 5.34 -56.49 -0.30 37.94 16 3 O -0.98 -21.59 18.10 -127.37 -2.30 -23.90 16 4 O -0.98 -24.77 17.19 -127.37 -2.19 -26.96 16 5 C -0.58 -8.34 4.17 31.12 0.13 -8.21 16 6 H 0.19 1.16 8.14 -2.38 -0.02 1.14 16 7 C -0.13 -2.87 7.46 31.12 0.23 -2.64 16 8 C 0.05 1.26 4.25 31.13 0.13 1.40 16 9 H 0.11 3.10 7.07 -2.39 -0.02 3.08 16 10 O -0.35 -11.97 10.24 -51.46 -0.53 -12.50 16 11 C 0.47 18.50 7.57 71.24 0.54 19.04 16 12 O -0.53 -24.36 15.21 21.97 0.33 -24.03 16 13 C -0.05 -1.91 5.31 29.10 0.15 -1.75 16 14 C -0.18 -8.15 4.43 -19.41 -0.09 -8.24 16 15 C -0.07 -2.82 9.66 22.22 0.21 -2.60 16 16 C -0.23 -8.72 10.05 22.46 0.23 -8.50 16 17 C -0.09 -3.56 10.02 22.22 0.22 -3.34 16 18 C -0.26 -12.28 7.17 22.73 0.16 -12.12 16 19 C 0.09 4.34 5.10 -21.29 -0.11 4.23 16 20 C -0.47 -26.07 8.55 23.46 0.20 -25.87 16 21 H 0.06 3.38 7.00 -2.91 -0.02 3.36 16 22 C 0.05 2.68 5.41 85.26 0.46 3.14 16 23 N -0.85 -46.30 13.93 21.83 0.30 -46.00 16 24 Si 0.96 42.88 24.52 68.60 1.68 44.57 16 25 H -0.27 -11.44 6.71 99.48 0.67 -10.77 16 26 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.25 -11.24 6.86 99.48 0.68 -10.55 16 28 C -0.10 -1.97 7.51 31.13 0.23 -1.73 16 29 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 2.57 7.36 -2.39 -0.02 2.56 16 33 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.13 3.84 8.05 -2.39 -0.02 3.82 16 35 H 0.10 4.14 7.13 -2.39 -0.02 4.13 16 36 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 38 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.09 4.49 4.77 -2.91 -0.01 4.48 16 40 H 0.29 14.39 8.30 -92.72 -0.77 13.62 16 41 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.10 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -79.58 363.29 1.89 -77.68 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.98 Total: 23.46 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 3.92 Total: -50.27 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.30 Total: -46.00 kcal Atomic # 8 Polarization: -82.70 SS G_CDS: -4.69 Total: -87.38 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.68 Total: 44.57 kcal Atomic # 16 Polarization: 38.25 SS G_CDS: -0.30 Total: 37.94 kcal Total: -79.58 1.89 -77.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873632796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.715 kcal (2) G-P(sol) polarization free energy of solvation -79.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds