Wall clock time and date at job start Tue Mar 31 2020 21:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99797 * 2 1 4 4 C 1.50699 * 109.44970 * 305.03805 * 3 2 1 5 5 O 1.20824 * 119.99561 * 144.33977 * 4 3 2 6 6 O 1.34228 * 120.00023 * 324.33966 * 4 3 2 7 7 C 1.45202 * 116.99436 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.46790 * 180.02562 * 7 6 4 9 9 C 1.38309 * 119.92838 * 269.72485 * 8 7 6 10 10 C 1.38104 * 120.06485 * 179.72451 * 9 8 7 11 11 C 1.38873 * 119.93154 * 0.52678 * 10 9 8 12 12 O 1.35751 * 120.07085 * 179.72581 * 11 10 9 13 13 C 1.34831 * 117.00366 * 174.69145 * 12 11 10 14 14 H 1.08001 * 119.99877 * 5.04907 * 13 12 11 15 15 C 1.38647 * 119.99913 * 185.05257 * 13 12 11 16 16 N 1.31554 * 120.00114 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99717 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47495 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47268 * 120.00189 * 17 15 13 20 20 H 1.48499 * 109.47080 * 239.99528 * 17 15 13 21 21 C 1.38881 * 119.86257 * 359.74561 * 11 10 9 22 22 C 1.38097 * 119.93382 * 0.02562 * 21 11 10 23 23 C 1.52933 * 109.60127 * 65.27190 * 3 2 1 24 24 C 1.53712 * 112.49221 * 89.83460 * 23 3 2 25 25 S 1.83400 * 104.96729 * 2.81830 * 24 23 3 26 26 C 1.55151 * 109.60197 * 184.80693 * 3 2 1 27 27 H 1.08999 * 109.46443 * 180.14755 * 1 2 3 28 28 H 1.08999 * 109.47092 * 300.14793 * 1 2 3 29 29 H 1.08998 * 109.46918 * 60.14912 * 1 2 3 30 30 H 1.09004 * 109.47045 * 299.99611 * 7 6 4 31 31 H 1.08992 * 109.47242 * 60.00302 * 7 6 4 32 32 H 1.07999 * 119.96426 * 359.97438 * 9 8 7 33 33 H 1.07998 * 120.02610 * 180.27301 * 10 9 8 34 34 H 0.97001 * 119.99733 * 179.97438 * 16 15 13 35 35 H 1.07997 * 120.03563 * 180.02562 * 21 11 10 36 36 H 1.08001 * 119.96695 * 179.97438 * 22 21 11 37 37 H 1.08998 * 108.89473 * 329.03546 * 23 3 2 38 38 H 1.09001 * 108.88961 * 210.62238 * 23 3 2 39 39 H 1.08992 * 110.34560 * 121.69592 * 24 23 3 40 40 H 1.09004 * 110.33696 * 243.84568 * 24 23 3 41 41 H 1.09004 * 111.13402 * 163.59457 * 26 3 2 42 42 H 1.09005 * 111.13329 * 39.42378 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4690 2.0958 -1.1635 5 8 1.2703 3.2819 -1.0478 6 8 1.2077 1.4819 -2.3282 7 6 0.6877 2.3054 -3.4051 8 6 0.4561 1.4503 -4.6243 9 6 1.4664 1.2868 -5.5546 10 6 1.2591 0.4992 -6.6700 11 6 0.0310 -0.1199 -6.8625 12 8 -0.1777 -0.8902 -7.9607 13 6 -1.3514 -1.5499 -8.0317 14 1 -2.1078 -1.3888 -7.2778 15 6 -1.5872 -2.4352 -9.0723 16 7 -0.6659 -2.6310 -9.9908 17 14 -3.2136 -3.3487 -9.1710 18 1 -4.0731 -2.9543 -8.0262 19 1 -3.8969 -3.0069 -10.4444 20 1 -2.9635 -4.8116 -9.1208 21 6 -0.9833 0.0508 -5.9294 22 6 -0.7684 0.8357 -4.8137 23 6 1.6683 2.0194 1.3086 24 6 2.7132 1.7659 2.4071 25 16 4.0062 0.7429 1.6039 26 6 3.5525 1.1887 -0.1225 27 1 -0.3632 -1.0277 0.0026 28 1 -0.3633 0.5161 0.8886 29 1 -0.3633 0.5115 -0.8913 30 1 -0.2543 2.7574 -3.0945 31 1 1.4064 3.0897 -3.6423 32 1 2.4198 1.7722 -5.4065 33 1 2.0499 0.3684 -7.3937 34 1 -0.8308 -3.2507 -10.7187 35 1 -1.9393 -0.4297 -6.0761 36 1 -1.5570 0.9693 -4.0879 37 1 0.6969 1.6695 1.6581 38 1 1.6073 3.0913 1.1204 39 1 3.1364 2.7091 2.7524 40 1 2.2636 1.2256 3.2402 41 1 3.9969 2.1409 -0.4122 42 1 3.8326 0.3984 -0.8190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885753414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:41 Heat of formation + Delta-G solvation = -119.242723 kcal Electronic energy + Delta-G solvation = -26555.991388 eV Core-core repulsion = 22593.963786 eV Total energy + Delta-G solvation = -3962.027602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22669 -39.23402 -38.60234 -37.14871 -36.24908 -34.36983 -32.48665 -30.89622 -30.34499 -30.22174 -26.89853 -26.50066 -25.81731 -24.91923 -22.97565 -22.11715 -20.68162 -20.19387 -18.67172 -18.13195 -17.61594 -17.13945 -16.90109 -16.68674 -15.87261 -15.42450 -15.09473 -14.72405 -14.65651 -14.56587 -14.30995 -13.78653 -13.74370 -13.62558 -13.35815 -13.06460 -12.83796 -12.74338 -12.47616 -12.44772 -12.35485 -11.98339 -11.77883 -11.52937 -11.44775 -11.12768 -10.90345 -10.88378 -10.76385 -10.60150 -10.50353 -10.49148 -9.91014 -9.45647 -8.94925 -8.32199 -8.01979 -7.38269 -6.56231 -4.14815 1.31089 1.62914 1.82804 2.00644 2.10513 2.63588 3.06340 3.07973 3.13583 3.14125 3.87744 3.91007 4.11391 4.22744 4.43489 4.50106 4.61980 4.85987 4.89006 4.98617 5.05881 5.08312 5.10056 5.13787 5.16815 5.21988 5.31459 5.39857 5.46876 5.53204 5.57334 5.70533 6.07739 6.26177 6.27537 6.53605 6.54075 6.75228 6.91972 7.09671 7.20844 7.31044 7.48279 7.66574 7.88487 8.89027 9.56384 10.61190 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002239 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.161226 B =12502.819692 C =12779.536135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.128 3.872 4 C 0.444 3.556 5 O -0.503 6.503 6 O -0.333 6.333 7 C 0.125 3.875 8 C -0.206 4.206 9 C -0.047 4.047 10 C -0.195 4.195 11 C 0.164 3.836 12 O -0.171 6.171 13 C -0.393 4.393 14 H 0.095 0.905 15 C 0.040 3.960 16 N -0.857 5.857 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.237 4.237 22 C -0.044 4.044 23 C -0.157 4.157 24 C -0.066 4.066 25 S -0.256 6.256 26 C -0.057 4.057 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.271 0.729 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 8.552 21.467 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.259 6.259 3 C 0.084 3.916 4 C 0.284 3.716 5 O -0.391 6.391 6 O -0.249 6.249 7 C 0.053 3.947 8 C -0.207 4.207 9 C -0.066 4.066 10 C -0.214 4.214 11 C 0.109 3.891 12 O -0.073 6.073 13 C -0.469 4.469 14 H 0.112 0.888 15 C -0.165 4.165 16 N -0.491 5.491 17 Si 0.767 3.233 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.257 4.257 22 C -0.062 4.062 23 C -0.195 4.195 24 C -0.214 4.214 25 S -0.029 6.029 26 C -0.205 4.205 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.498 7.806 21.495 23.307 hybrid contribution -2.035 0.612 -0.603 2.208 sum 2.463 8.417 20.893 22.659 Atomic orbital electron populations 1.23048 0.80102 1.04322 1.00406 1.88139 1.20389 1.23050 1.94357 1.22253 0.94444 0.84484 0.90447 1.24117 0.75277 0.87263 0.84979 1.90657 1.48542 1.16467 1.83477 1.86787 1.74241 1.43336 1.20530 1.21814 0.98534 0.91516 0.82819 1.18804 0.96263 1.09077 0.96578 1.20498 0.97017 0.96055 0.92990 1.20197 0.96356 1.04251 1.00626 1.19438 0.92894 0.90173 0.86605 1.83979 1.38082 1.51677 1.33550 1.21422 0.91259 1.22158 1.12091 0.88799 1.25336 0.99601 0.96595 0.94943 1.70045 1.33321 1.33838 1.11937 0.85616 0.79792 0.79082 0.78770 1.19015 1.20040 1.20001 1.21133 1.00927 1.06301 0.97305 1.20584 0.95470 0.94185 0.95979 1.22527 1.01001 1.03846 0.92124 1.23852 0.95623 1.02119 0.99846 1.87946 1.47022 1.64364 1.03580 1.24357 0.91504 1.07022 0.97654 0.88040 0.93597 0.92950 0.91173 0.90985 0.86899 0.86152 0.91855 0.85238 0.87464 0.88679 0.87666 0.88487 0.87739 0.87093 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.31 101.05 1.04 1.21 16 2 O -0.34 -3.94 10.09 -48.92 -0.49 -4.43 16 3 C 0.13 1.34 0.75 -90.67 -0.07 1.27 16 4 C 0.44 5.56 5.57 36.01 0.20 5.76 16 5 O -0.50 -6.96 15.26 -18.75 -0.29 -7.25 16 6 O -0.33 -4.71 8.94 -44.37 -0.40 -5.11 16 7 C 0.13 1.76 5.59 36.01 0.20 1.96 16 8 C -0.21 -3.45 5.52 -104.57 -0.58 -4.02 16 9 C -0.05 -0.82 9.69 -39.60 -0.38 -1.20 16 10 C -0.20 -3.97 9.99 -39.40 -0.39 -4.37 16 11 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 12 O -0.17 -4.72 9.76 0.04 0.00 -4.72 16 13 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 14 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -24.50 13.67 55.48 0.76 -23.74 16 17 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.24 -4.95 9.17 -39.40 -0.36 -5.31 16 22 C -0.04 -0.77 9.69 -39.61 -0.38 -1.16 16 23 C -0.16 -1.29 5.40 -26.40 -0.14 -1.43 16 24 C -0.07 -0.48 7.38 37.53 0.28 -0.20 16 25 S -0.26 -2.52 23.13 -107.50 -2.49 -5.00 16 26 C -0.06 -0.56 6.53 38.30 0.25 -0.31 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.34 6.18 -51.93 -0.32 0.02 16 29 H 0.05 0.56 6.32 -51.93 -0.33 0.23 16 30 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.09 0.69 5.87 -51.93 -0.30 0.38 16 38 H 0.10 0.90 6.73 -51.93 -0.35 0.55 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -31.10 364.18 -8.07 -39.17 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.23 Total: 4.32 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.40 Total: -13.60 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.76 Total: -23.74 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.18 Total: -21.51 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.49 Total: -5.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.10 -8.07 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885753414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.073 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds