Wall clock time and date at job start Tue Mar 31 2020 21:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99797 * 2 1 4 4 C 1.50699 * 109.44970 * 305.03805 * 3 2 1 5 5 O 1.20824 * 119.99561 * 144.33977 * 4 3 2 6 6 O 1.34228 * 120.00023 * 324.33966 * 4 3 2 7 7 C 1.45202 * 116.99436 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.46790 * 180.02562 * 7 6 4 9 9 C 1.38309 * 119.92838 * 269.72485 * 8 7 6 10 10 C 1.38104 * 120.06485 * 179.72451 * 9 8 7 11 11 C 1.38873 * 119.93154 * 0.52678 * 10 9 8 12 12 O 1.35751 * 120.07085 * 179.72581 * 11 10 9 13 13 C 1.34831 * 117.00366 * 174.69145 * 12 11 10 14 14 H 1.08001 * 119.99877 * 5.04907 * 13 12 11 15 15 C 1.38647 * 119.99913 * 185.05257 * 13 12 11 16 16 N 1.31554 * 120.00114 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99717 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47495 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47268 * 120.00189 * 17 15 13 20 20 H 1.48499 * 109.47080 * 239.99528 * 17 15 13 21 21 C 1.38881 * 119.86257 * 359.74561 * 11 10 9 22 22 C 1.38097 * 119.93382 * 0.02562 * 21 11 10 23 23 C 1.52933 * 109.60127 * 65.27190 * 3 2 1 24 24 C 1.53712 * 112.49221 * 89.83460 * 23 3 2 25 25 S 1.83400 * 104.96729 * 2.81830 * 24 23 3 26 26 C 1.55151 * 109.60197 * 184.80693 * 3 2 1 27 27 H 1.08999 * 109.46443 * 180.14755 * 1 2 3 28 28 H 1.08999 * 109.47092 * 300.14793 * 1 2 3 29 29 H 1.08998 * 109.46918 * 60.14912 * 1 2 3 30 30 H 1.09004 * 109.47045 * 299.99611 * 7 6 4 31 31 H 1.08992 * 109.47242 * 60.00302 * 7 6 4 32 32 H 1.07999 * 119.96426 * 359.97438 * 9 8 7 33 33 H 1.07998 * 120.02610 * 180.27301 * 10 9 8 34 34 H 0.97001 * 119.99733 * 179.97438 * 16 15 13 35 35 H 1.07997 * 120.03563 * 180.02562 * 21 11 10 36 36 H 1.08001 * 119.96695 * 179.97438 * 22 21 11 37 37 H 1.08998 * 108.89473 * 329.03546 * 23 3 2 38 38 H 1.09001 * 108.88961 * 210.62238 * 23 3 2 39 39 H 1.08992 * 110.34560 * 121.69592 * 24 23 3 40 40 H 1.09004 * 110.33696 * 243.84568 * 24 23 3 41 41 H 1.09004 * 111.13402 * 163.59457 * 26 3 2 42 42 H 1.09005 * 111.13329 * 39.42378 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4690 2.0958 -1.1635 5 8 1.2703 3.2819 -1.0478 6 8 1.2077 1.4819 -2.3282 7 6 0.6877 2.3054 -3.4051 8 6 0.4561 1.4503 -4.6243 9 6 1.4664 1.2868 -5.5546 10 6 1.2591 0.4992 -6.6700 11 6 0.0310 -0.1199 -6.8625 12 8 -0.1777 -0.8902 -7.9607 13 6 -1.3514 -1.5499 -8.0317 14 1 -2.1078 -1.3888 -7.2778 15 6 -1.5872 -2.4352 -9.0723 16 7 -0.6659 -2.6310 -9.9908 17 14 -3.2136 -3.3487 -9.1710 18 1 -4.0731 -2.9543 -8.0262 19 1 -3.8969 -3.0069 -10.4444 20 1 -2.9635 -4.8116 -9.1208 21 6 -0.9833 0.0508 -5.9294 22 6 -0.7684 0.8357 -4.8137 23 6 1.6683 2.0194 1.3086 24 6 2.7132 1.7659 2.4071 25 16 4.0062 0.7429 1.6039 26 6 3.5525 1.1887 -0.1225 27 1 -0.3632 -1.0277 0.0026 28 1 -0.3633 0.5161 0.8886 29 1 -0.3633 0.5115 -0.8913 30 1 -0.2543 2.7574 -3.0945 31 1 1.4064 3.0897 -3.6423 32 1 2.4198 1.7722 -5.4065 33 1 2.0499 0.3684 -7.3937 34 1 -0.8308 -3.2507 -10.7187 35 1 -1.9393 -0.4297 -6.0761 36 1 -1.5570 0.9693 -4.0879 37 1 0.6969 1.6695 1.6581 38 1 1.6073 3.0913 1.1204 39 1 3.1364 2.7091 2.7524 40 1 2.2636 1.2256 3.2402 41 1 3.9969 2.1409 -0.4122 42 1 3.8326 0.3984 -0.8190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885753414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:40 Heat of formation + Delta-G solvation = -136.731058 kcal Electronic energy + Delta-G solvation = -26556.749739 eV Core-core repulsion = 22593.963786 eV Total energy + Delta-G solvation = -3962.785953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19768 -40.84954 -39.57498 -38.54881 -37.55463 -35.10265 -34.38270 -32.24326 -31.85722 -31.11189 -28.01911 -27.54377 -27.08626 -26.23349 -23.88167 -23.71222 -22.20474 -21.04280 -19.92056 -19.57841 -18.96782 -18.41080 -17.83725 -17.67313 -16.80350 -16.51789 -16.34580 -16.16780 -15.99525 -15.58703 -15.45132 -15.27360 -15.13481 -14.64187 -14.38594 -14.33043 -14.21987 -13.86683 -13.55690 -13.48590 -13.20664 -13.10939 -13.06190 -12.81746 -12.61219 -12.44496 -12.26586 -12.17789 -12.10071 -11.79832 -11.75758 -11.24657 -11.22195 -10.86512 -10.71924 -9.85961 -9.07679 -8.75555 -8.50289 -6.18718 0.35871 0.53799 0.61900 0.77023 1.25820 1.35441 1.41343 1.53590 1.58815 2.15831 2.36827 2.77534 3.09078 3.18260 3.38027 3.44018 3.48604 3.81293 3.85434 3.87545 3.90566 4.11113 4.14267 4.23576 4.26213 4.32585 4.39798 4.44107 4.52108 4.68726 4.71602 4.72847 4.75183 4.86390 4.96725 5.10472 5.19616 5.22771 5.48101 5.64166 5.65722 5.76692 5.98952 6.09953 6.48287 6.94352 7.72201 8.72657 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002239 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.161226 B =12502.819692 C =12779.536135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.358 6.358 3 C 0.128 3.872 4 C 0.450 3.550 5 O -0.514 6.514 6 O -0.345 6.345 7 C 0.126 3.874 8 C -0.182 4.182 9 C -0.041 4.041 10 C -0.206 4.206 11 C 0.126 3.874 12 O -0.226 6.226 13 C -0.414 4.414 14 H 0.105 0.895 15 C -0.021 4.021 16 N -0.918 5.918 17 Si 1.019 2.981 18 H -0.250 1.250 19 H -0.268 1.268 20 H -0.269 1.269 21 C -0.245 4.245 22 C -0.042 4.042 23 C -0.153 4.153 24 C -0.054 4.054 25 S -0.295 6.295 26 C -0.055 4.055 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.118 0.882 34 H 0.274 0.726 35 H 0.124 0.876 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 10.156 24.903 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.277 6.277 3 C 0.084 3.916 4 C 0.290 3.710 5 O -0.403 6.403 6 O -0.261 6.261 7 C 0.053 3.947 8 C -0.183 4.183 9 C -0.059 4.059 10 C -0.226 4.226 11 C 0.075 3.925 12 O -0.132 6.132 13 C -0.490 4.490 14 H 0.122 0.878 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.838 3.162 18 H -0.173 1.173 19 H -0.193 1.193 20 H -0.194 1.194 21 C -0.264 4.264 22 C -0.060 4.060 23 C -0.191 4.191 24 C -0.201 4.201 25 S -0.068 6.068 26 C -0.203 4.203 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.726 9.453 24.994 26.981 hybrid contribution -1.635 0.379 -1.334 2.144 sum 2.091 9.832 23.661 25.707 Atomic orbital electron populations 1.23186 0.79233 1.05111 1.00860 1.88130 1.21453 1.23708 1.94405 1.22438 0.94557 0.84143 0.90476 1.24477 0.74622 0.87213 0.84653 1.90658 1.49062 1.17001 1.83542 1.86752 1.74583 1.43608 1.21140 1.21783 1.00089 0.90921 0.81859 1.19218 0.95293 1.06722 0.97079 1.20905 0.98756 0.94752 0.91490 1.20449 0.95529 1.04730 1.01844 1.20001 0.94800 0.90788 0.86933 1.83952 1.38884 1.54220 1.36161 1.21893 0.91735 1.22660 1.12736 0.87800 1.26609 1.03707 0.97344 0.94284 1.70185 1.36137 1.35861 1.13375 0.84521 0.74856 0.77462 0.79335 1.17294 1.19340 1.19406 1.21242 1.00199 1.07018 0.97934 1.20945 0.96935 0.92835 0.95244 1.22525 1.01908 1.03460 0.91215 1.23963 0.94136 1.02499 0.99524 1.88109 1.48688 1.65606 1.04404 1.24377 0.91204 1.07387 0.97356 0.87269 0.91357 0.94170 0.89566 0.89347 0.83281 0.86351 0.91727 0.85816 0.84017 0.87407 0.87659 0.86692 0.86176 0.85959 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.31 113.37 1.17 1.36 16 2 O -0.36 -7.44 10.09 -135.89 -1.37 -8.81 16 3 C 0.13 2.34 0.75 -10.82 -0.01 2.33 16 4 C 0.45 9.87 5.57 71.24 0.40 10.27 16 5 O -0.51 -12.46 15.26 21.97 0.34 -12.12 16 6 O -0.34 -8.63 8.94 -46.50 -0.42 -9.04 16 7 C 0.13 3.04 5.59 71.24 0.40 3.43 16 8 C -0.18 -5.54 5.52 -19.83 -0.11 -5.65 16 9 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 10 C -0.21 -8.50 9.99 22.39 0.22 -8.28 16 11 C 0.13 6.10 6.65 22.58 0.15 6.25 16 12 O -0.23 -13.33 9.76 -22.76 -0.22 -13.55 16 13 C -0.41 -23.57 9.49 67.92 0.64 -22.93 16 14 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 15 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 16 N -0.92 -55.49 13.67 21.61 0.30 -55.19 16 17 Si 1.02 41.89 29.55 68.60 2.03 43.92 16 18 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 21 C -0.24 -10.24 9.17 22.39 0.21 -10.04 16 22 C -0.04 -1.37 9.69 22.25 0.22 -1.16 16 23 C -0.15 -2.01 5.40 30.81 0.17 -1.84 16 24 C -0.05 -0.59 7.38 72.22 0.53 -0.06 16 25 S -0.30 -5.25 23.13 -56.49 -1.31 -6.55 16 26 C -0.06 -0.96 6.53 72.72 0.47 -0.49 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 0.79 6.18 -2.39 -0.01 0.78 16 29 H 0.04 0.75 6.32 -2.39 -0.02 0.74 16 30 H 0.09 1.87 8.08 -2.38 -0.02 1.85 16 31 H 0.09 1.91 8.07 -2.39 -0.02 1.89 16 32 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 33 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 34 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.12 5.23 5.64 -2.91 -0.02 5.22 16 36 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.11 1.14 5.87 -2.39 -0.01 1.13 16 38 H 0.11 1.43 6.73 -2.39 -0.02 1.42 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.12 1.79 8.10 -2.38 -0.02 1.77 16 42 H 0.12 2.28 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -71.73 364.18 5.54 -66.19 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 1.05 Total: 23.81 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 5.14 Total: -28.65 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.30 Total: -55.19 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.67 Total: -43.53 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.31 Total: -6.55 kcal Total: -71.73 5.54 -66.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885753414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.542 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds