Wall clock time and date at job start Tue Mar 31 2020 20:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99568 * 2 1 4 4 H 1.48503 * 109.47230 * 240.00001 * 3 2 1 5 5 H 1.48497 * 109.47478 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46900 * 120.00136 * 3 2 1 7 7 C 1.37870 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00443 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.42908 * 114.00174 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47380 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.46988 * 64.99654 * 12 11 10 14 14 C 1.34232 * 116.99753 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00305 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47550 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.72160 * 305.57153 * 17 16 14 19 19 C 1.53214 * 109.69504 * 184.99972 * 17 16 14 20 20 C 1.53000 * 110.10472 * 175.30197 * 19 17 16 21 21 C 1.51088 * 109.52256 * 52.91008 * 20 19 17 22 22 S 1.70292 * 126.25746 * 159.20133 * 21 20 19 23 23 C 1.75413 * 92.71980 * 180.02562 * 22 21 20 24 24 C 1.32536 * 110.77100 * 359.97438 * 23 22 21 25 25 C 1.38046 * 123.28890 * 339.19309 * 21 20 19 26 26 C 1.48165 * 120.85078 * 359.93791 * 25 21 20 27 27 O 1.21358 * 122.23479 * 168.28959 * 26 25 21 28 28 H 0.96999 * 120.00599 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.47191 * 59.99852 * 9 7 2 30 30 H 1.09004 * 109.47072 * 300.00498 * 9 7 2 31 31 H 1.08997 * 109.46841 * 59.99933 * 11 10 9 32 32 H 1.08998 * 109.47044 * 300.00266 * 11 10 9 33 33 H 1.09000 * 109.46889 * 304.99905 * 12 11 10 34 34 H 1.08991 * 109.47235 * 185.00448 * 12 11 10 35 35 H 1.09004 * 109.47418 * 60.00102 * 16 14 13 36 36 H 1.08998 * 109.47508 * 300.00383 * 16 14 13 37 37 H 1.09002 * 109.34626 * 295.46042 * 19 17 16 38 38 H 1.08997 * 109.34565 * 55.15125 * 19 17 16 39 39 H 1.08996 * 109.49210 * 172.74358 * 20 19 17 40 40 H 1.09001 * 109.49072 * 292.82249 * 20 19 17 41 41 H 1.07995 * 124.61321 * 180.02562 * 23 22 21 42 42 H 1.08005 * 123.31983 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5852 -0.0017 11 6 1.5652 -4.8754 -0.0024 12 6 2.6481 -5.9562 -0.0030 13 8 3.3995 -5.8892 1.2376 14 6 4.3936 -6.7770 1.3967 15 8 4.6285 -7.5831 0.5279 16 6 5.2167 -6.7684 2.6590 17 6 6.2744 -7.8715 2.5858 18 1 5.7944 -8.8282 2.3799 19 6 7.0321 -7.9494 3.9151 20 6 8.0116 -9.1246 3.8941 21 6 8.8908 -9.0272 2.6692 22 16 10.4066 -9.7734 2.4556 23 6 10.6016 -9.1061 0.8451 24 6 9.5559 -8.3618 0.5150 25 6 8.5504 -8.2969 1.5483 26 6 7.2710 -7.5523 1.4863 27 8 7.0354 -6.7417 0.6144 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 0.9447 -4.9818 -0.8922 32 1 0.9454 -4.9831 0.8877 33 1 3.3216 -5.7951 -0.8448 34 1 2.1822 -6.9374 -0.0932 35 1 4.5678 -6.9432 3.5172 36 1 5.7078 -5.8012 2.7659 37 1 7.5838 -7.0223 4.0712 38 1 6.3203 -8.0873 4.7289 39 1 8.6346 -9.0948 4.7880 40 1 7.4551 -10.0615 3.8692 41 1 11.4569 -9.2791 0.2089 42 1 9.4650 -7.8540 -0.4339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885858339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:17 Heat of formation + Delta-G solvation = -150.948445 kcal Electronic energy + Delta-G solvation = -25995.946290 eV Core-core repulsion = 22032.543825 eV Total energy + Delta-G solvation = -3963.402465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80476 -39.67332 -37.36258 -36.98516 -36.07955 -35.59440 -32.74271 -32.23507 -30.08167 -28.79438 -27.54063 -26.76904 -23.92619 -22.90110 -22.47536 -22.14985 -21.21029 -20.19261 -18.48527 -17.85520 -17.50273 -16.83149 -16.56201 -16.21948 -15.99787 -15.51794 -15.21379 -14.84118 -14.48616 -14.37665 -14.34405 -14.10710 -13.94342 -13.70361 -13.31030 -13.04368 -12.60558 -12.52612 -12.34961 -12.18658 -11.90492 -11.87609 -11.63491 -11.46608 -11.34816 -11.30840 -10.87998 -10.81026 -10.70200 -10.27741 -10.22753 -9.99912 -9.69398 -9.14851 -9.10173 -8.82977 -8.78672 -8.17065 -6.08632 -4.10036 0.30381 1.09846 1.51927 1.55959 2.45315 2.72784 2.90694 3.35005 3.36961 3.41641 3.69693 4.07381 4.19891 4.35987 4.38853 4.50121 4.71416 4.78670 4.89663 4.95453 5.01183 5.04812 5.20138 5.26350 5.27720 5.32416 5.36400 5.41859 5.45099 5.50550 5.56943 5.74136 5.79965 5.93173 5.97309 5.99431 6.16887 6.75295 7.09254 7.43533 7.44676 7.81752 8.00481 8.16488 8.57341 9.02719 9.54494 11.02896 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002055 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.503891 B =13619.265278 C =14225.998688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.342 6.342 14 C 0.465 3.535 15 O -0.511 6.511 16 C -0.105 4.105 17 C -0.118 4.118 18 H 0.116 0.884 19 C -0.106 4.106 20 C -0.053 4.053 21 C -0.170 4.170 22 S 0.185 5.815 23 C -0.242 4.242 24 C -0.083 4.083 25 C -0.191 4.191 26 C 0.421 3.579 27 O -0.425 6.425 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.169 0.831 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.808 -24.500 10.366 32.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.258 6.258 14 C 0.308 3.692 15 O -0.399 6.399 16 C -0.143 4.143 17 C -0.137 4.137 18 H 0.134 0.866 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.290 4.290 22 S 0.452 5.548 23 C -0.377 4.377 24 C -0.111 4.111 25 C -0.207 4.207 26 C 0.294 3.706 27 O -0.297 6.297 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.186 0.814 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 19.691 -25.066 10.477 33.553 hybrid contribution -0.814 1.663 -1.209 2.211 sum 18.877 -23.403 9.268 31.463 Atomic orbital electron populations 1.69952 1.06080 1.27258 1.50590 1.24948 0.94999 0.99433 0.95155 0.86378 0.79289 0.81822 0.78889 1.20006 1.21166 1.19985 1.21020 0.94094 0.89321 1.50795 0.91555 1.20230 0.88754 0.83549 0.95458 1.87935 1.35241 1.12593 1.95201 1.22319 0.93283 0.85534 1.00419 1.23166 0.93595 0.98508 0.84516 1.86566 1.43549 1.54271 1.41429 1.23303 0.78905 0.78167 0.88807 1.90628 1.67374 1.38656 1.43281 1.21252 0.96454 1.01605 0.94994 1.21757 0.95306 1.01090 0.95588 0.86572 1.21577 0.97981 0.98952 0.95967 1.20315 0.95781 1.00096 0.92976 1.25397 1.01262 1.01856 1.00448 1.82847 1.12135 1.47922 1.11897 1.25358 1.04583 1.07084 1.00646 1.21048 0.91766 0.98519 0.99782 1.21598 0.99172 1.05145 0.94747 1.22175 0.85000 0.79273 0.84159 1.90624 1.77163 1.28274 1.33629 0.92615 0.97644 0.97511 0.92057 0.93281 0.90534 0.90624 0.86703 0.87022 0.90444 0.89121 0.89235 0.88906 0.81373 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.56 9.43 -34.44 -0.32 -15.89 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.47 5.69 36.00 0.20 5.67 16 10 O -0.39 -9.89 10.30 -38.80 -0.40 -10.29 16 11 C 0.06 1.20 6.33 37.16 0.24 1.43 16 12 C 0.08 1.31 5.84 37.16 0.22 1.53 16 13 O -0.34 -6.10 10.19 -42.03 -0.43 -6.53 16 14 C 0.47 7.30 7.07 36.00 0.25 7.55 16 15 O -0.51 -9.05 13.98 -25.80 -0.36 -9.41 16 16 C -0.11 -1.13 5.07 -27.88 -0.14 -1.27 16 17 C -0.12 -1.10 2.02 -91.13 -0.18 -1.29 16 18 H 0.12 1.03 7.94 -51.93 -0.41 0.62 16 19 C -0.11 -0.59 5.14 -26.62 -0.14 -0.73 16 20 C -0.05 -0.26 6.20 -27.69 -0.17 -0.43 16 21 C -0.17 -1.32 6.27 -34.19 -0.21 -1.54 16 22 S 0.18 1.17 22.98 -107.50 -2.47 -1.31 16 23 C -0.24 -1.84 11.09 28.82 0.32 -1.52 16 24 C -0.08 -0.84 10.37 -39.10 -0.41 -1.25 16 25 C -0.19 -2.06 6.05 -103.50 -0.63 -2.68 16 26 C 0.42 5.41 6.32 -29.70 -0.19 5.22 16 27 O -0.42 -7.31 15.12 -15.59 -0.24 -7.55 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 34 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -37.38 372.93 -9.69 -47.07 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -5.88 Total: -4.73 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.26 Total: -3.64 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.42 Total: -33.78 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.47 Total: -1.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.38 -9.69 -47.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885858339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.879 kcal (2) G-P(sol) polarization free energy of solvation -37.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds