Wall clock time and date at job start Tue Mar 31 2020 20:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99568 * 2 1 4 4 H 1.48503 * 109.47230 * 240.00001 * 3 2 1 5 5 H 1.48497 * 109.47478 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46900 * 120.00136 * 3 2 1 7 7 C 1.37870 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00443 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.42908 * 114.00174 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47380 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.46988 * 64.99654 * 12 11 10 14 14 C 1.34232 * 116.99753 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00305 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47550 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.72160 * 305.57153 * 17 16 14 19 19 C 1.53214 * 109.69504 * 184.99972 * 17 16 14 20 20 C 1.53000 * 110.10472 * 175.30197 * 19 17 16 21 21 C 1.51088 * 109.52256 * 52.91008 * 20 19 17 22 22 S 1.70292 * 126.25746 * 159.20133 * 21 20 19 23 23 C 1.75413 * 92.71980 * 180.02562 * 22 21 20 24 24 C 1.32536 * 110.77100 * 359.97438 * 23 22 21 25 25 C 1.38046 * 123.28890 * 339.19309 * 21 20 19 26 26 C 1.48165 * 120.85078 * 359.93791 * 25 21 20 27 27 O 1.21358 * 122.23479 * 168.28959 * 26 25 21 28 28 H 0.96999 * 120.00599 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.47191 * 59.99852 * 9 7 2 30 30 H 1.09004 * 109.47072 * 300.00498 * 9 7 2 31 31 H 1.08997 * 109.46841 * 59.99933 * 11 10 9 32 32 H 1.08998 * 109.47044 * 300.00266 * 11 10 9 33 33 H 1.09000 * 109.46889 * 304.99905 * 12 11 10 34 34 H 1.08991 * 109.47235 * 185.00448 * 12 11 10 35 35 H 1.09004 * 109.47418 * 60.00102 * 16 14 13 36 36 H 1.08998 * 109.47508 * 300.00383 * 16 14 13 37 37 H 1.09002 * 109.34626 * 295.46042 * 19 17 16 38 38 H 1.08997 * 109.34565 * 55.15125 * 19 17 16 39 39 H 1.08996 * 109.49210 * 172.74358 * 20 19 17 40 40 H 1.09001 * 109.49072 * 292.82249 * 20 19 17 41 41 H 1.07995 * 124.61321 * 180.02562 * 23 22 21 42 42 H 1.08005 * 123.31983 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5852 -0.0017 11 6 1.5652 -4.8754 -0.0024 12 6 2.6481 -5.9562 -0.0030 13 8 3.3995 -5.8892 1.2376 14 6 4.3936 -6.7770 1.3967 15 8 4.6285 -7.5831 0.5279 16 6 5.2167 -6.7684 2.6590 17 6 6.2744 -7.8715 2.5858 18 1 5.7944 -8.8282 2.3799 19 6 7.0321 -7.9494 3.9151 20 6 8.0116 -9.1246 3.8941 21 6 8.8908 -9.0272 2.6692 22 16 10.4066 -9.7734 2.4556 23 6 10.6016 -9.1061 0.8451 24 6 9.5559 -8.3618 0.5150 25 6 8.5504 -8.2969 1.5483 26 6 7.2710 -7.5523 1.4863 27 8 7.0354 -6.7417 0.6144 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 0.9447 -4.9818 -0.8922 32 1 0.9454 -4.9831 0.8877 33 1 3.3216 -5.7951 -0.8448 34 1 2.1822 -6.9374 -0.0932 35 1 4.5678 -6.9432 3.5172 36 1 5.7078 -5.8012 2.7659 37 1 7.5838 -7.0223 4.0712 38 1 6.3203 -8.0873 4.7289 39 1 8.6346 -9.0948 4.7880 40 1 7.4551 -10.0615 3.8692 41 1 11.4569 -9.2791 0.2089 42 1 9.4650 -7.8540 -0.4339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885858339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:16 Heat of formation + Delta-G solvation = -173.771255 kcal Electronic energy + Delta-G solvation = -25996.935961 eV Core-core repulsion = 22032.543825 eV Total energy + Delta-G solvation = -3964.392136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84695 -40.72164 -38.77682 -38.13492 -37.45019 -36.39895 -34.96883 -33.01848 -31.64688 -29.44234 -29.13094 -28.18143 -24.78347 -24.51829 -23.75110 -23.34838 -22.25690 -21.11828 -19.24875 -18.81603 -18.70094 -18.37258 -17.96920 -17.60057 -17.27968 -16.85909 -16.44414 -16.28522 -16.11852 -15.51009 -15.25081 -15.04265 -14.87139 -14.50828 -14.40289 -14.32529 -13.99953 -13.70219 -13.32465 -13.23170 -13.11798 -12.97352 -12.92309 -12.71239 -12.50299 -12.44531 -12.23511 -12.02677 -12.00679 -11.91817 -11.72008 -11.45305 -11.31506 -10.91205 -10.54492 -10.29620 -9.73432 -9.38626 -8.34109 -6.46500 -0.35653 0.54328 0.74548 0.92842 1.24502 1.38192 1.43128 1.51625 1.69546 1.99035 2.32997 2.96849 2.99209 3.03973 3.44686 3.53072 3.71291 3.90591 3.92064 4.02677 4.07717 4.17509 4.28601 4.37102 4.40703 4.45315 4.49178 4.57469 4.60325 4.71490 4.75928 4.82568 4.83221 4.93704 5.02870 5.15132 5.18095 5.24205 5.31371 5.49000 5.52022 5.92900 6.47676 6.57489 6.75108 6.78635 7.24818 8.77846 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002055 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.503891 B =13619.265278 C =14225.998688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.208 3.792 10 O -0.412 6.412 11 C 0.055 3.945 12 C 0.080 3.920 13 O -0.362 6.362 14 C 0.457 3.543 15 O -0.537 6.537 16 C -0.102 4.102 17 C -0.114 4.114 18 H 0.123 0.877 19 C -0.099 4.099 20 C -0.056 4.056 21 C -0.159 4.159 22 S 0.255 5.745 23 C -0.245 4.245 24 C -0.117 4.117 25 C -0.240 4.240 26 C 0.411 3.589 27 O -0.492 6.492 28 H 0.272 0.728 29 H -0.008 1.008 30 H -0.007 1.007 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.157 0.843 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.189 0.811 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.145 -25.831 13.252 35.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.133 3.867 10 O -0.332 6.332 11 C -0.022 4.022 12 C 0.006 3.994 13 O -0.278 6.278 14 C 0.302 3.698 15 O -0.426 6.426 16 C -0.139 4.139 17 C -0.132 4.132 18 H 0.140 0.860 19 C -0.138 4.138 20 C -0.094 4.094 21 C -0.279 4.279 22 S 0.522 5.478 23 C -0.380 4.380 24 C -0.145 4.145 25 C -0.255 4.255 26 C 0.289 3.711 27 O -0.369 6.369 28 H 0.081 0.919 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.175 0.825 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.206 0.794 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.036 -26.439 13.383 36.341 hybrid contribution -1.161 1.897 -2.081 3.046 sum 19.875 -24.542 11.302 33.542 Atomic orbital electron populations 1.70046 1.07581 1.28803 1.50184 1.25940 0.96043 1.03270 0.93817 0.85247 0.78151 0.76783 0.79306 1.19330 1.19532 1.18997 1.21337 0.93948 0.91053 1.52704 0.92539 1.19883 0.88538 0.84302 0.93970 1.87883 1.35681 1.14314 1.95336 1.22642 0.94362 0.83236 1.01920 1.23098 0.92931 0.99202 0.84170 1.86568 1.44490 1.55448 1.41324 1.24351 0.78257 0.77062 0.90120 1.90606 1.67780 1.39708 1.44553 1.21490 0.96643 1.02109 0.93664 1.21854 0.94368 1.00468 0.96547 0.85950 1.21638 0.98501 0.99307 0.94346 1.20587 0.95760 1.00651 0.92452 1.25940 1.02154 0.99587 1.00263 1.82619 1.09963 1.45645 1.09530 1.25680 1.04197 1.05910 1.02194 1.21064 0.93333 1.00332 0.99740 1.21564 0.99338 1.07921 0.96650 1.22997 0.86417 0.77873 0.83815 1.90585 1.78691 1.31334 1.36314 0.91898 0.99045 0.98953 0.90170 0.92037 0.92424 0.87291 0.82520 0.87481 0.90806 0.85499 0.86215 0.86705 0.79353 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.98 45.65 29.54 68.60 2.03 47.68 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -34.32 9.43 25.60 0.24 -34.08 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 12.11 5.69 71.24 0.41 12.52 16 10 O -0.41 -21.64 10.30 -145.57 -1.50 -23.14 16 11 C 0.06 2.16 6.33 71.98 0.46 2.62 16 12 C 0.08 2.81 5.84 71.98 0.42 3.23 16 13 O -0.36 -13.19 10.19 -48.79 -0.50 -13.69 16 14 C 0.46 14.68 7.07 71.23 0.50 15.19 16 15 O -0.54 -19.81 13.98 28.71 0.40 -19.41 16 16 C -0.10 -2.11 5.07 29.85 0.15 -1.96 16 17 C -0.11 -2.00 2.02 -11.12 -0.02 -2.02 16 18 H 0.12 2.01 7.94 -2.39 -0.02 1.99 16 19 C -0.10 -0.79 5.14 30.67 0.16 -0.63 16 20 C -0.06 -0.33 6.20 29.97 0.19 -0.14 16 21 C -0.16 -2.14 6.27 25.76 0.16 -1.98 16 22 S 0.26 2.48 22.98 -56.49 -1.30 1.18 16 23 C -0.25 -3.56 11.09 66.67 0.74 -2.82 16 24 C -0.12 -2.55 10.37 22.67 0.24 -2.32 16 25 C -0.24 -5.31 6.05 -19.14 -0.12 -5.43 16 26 C 0.41 11.19 6.32 28.67 0.18 11.38 16 27 O -0.49 -18.68 15.12 16.88 0.26 -18.42 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 34 H 0.11 3.09 8.13 -2.39 -0.02 3.07 16 35 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 42 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -86.53 372.93 4.86 -81.67 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.03 Total: 5.82 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.16 Total: -5.50 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -73.32 SS G_CDS: -1.34 Total: -74.66 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.30 Total: 1.18 kcal Total: -86.53 4.86 -81.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885858339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.103 kcal (2) G-P(sol) polarization free energy of solvation -86.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds