Wall clock time and date at job start Tue Mar 31 2020 21:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47069 * 269.99938 * 3 2 1 5 5 H 1.48501 * 109.47134 * 29.99701 * 3 2 1 6 6 H 1.48503 * 109.47156 * 149.99687 * 3 2 1 7 7 C 1.38949 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00370 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99821 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00232 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99678 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00456 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47627 * 180.02562 * 12 10 9 14 14 S 1.65597 * 120.00307 * 165.00274 * 13 12 10 15 15 O 1.42102 * 104.27827 * 308.93011 * 14 13 12 16 16 O 1.42099 * 104.28216 * 181.07463 * 14 13 12 17 17 C 1.81396 * 104.45238 * 65.00274 * 14 13 12 18 18 H 1.09004 * 109.67948 * 300.52345 * 17 14 13 19 19 C 1.53327 * 109.68659 * 180.02562 * 17 14 13 20 20 C 1.52737 * 108.37332 * 170.31614 * 19 17 14 21 21 C 1.50635 * 110.55571 * 51.09154 * 20 19 17 22 22 C 1.38965 * 117.71055 * 162.54684 * 21 20 19 23 23 C 1.37931 * 120.53276 * 179.72587 * 22 21 20 24 24 C 1.38267 * 119.77289 * 359.97438 * 23 22 21 25 25 C 1.37938 * 119.76758 * 0.09636 * 24 23 22 26 26 C 1.37613 * 122.60603 * 342.39378 * 21 20 19 27 27 C 1.50631 * 122.55546 * 0.43859 * 26 21 20 28 28 H 0.96997 * 120.00326 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00170 * 0.02562 * 9 7 2 30 30 H 1.09008 * 109.46782 * 60.00627 * 12 10 9 31 31 H 1.08997 * 109.47318 * 300.01070 * 12 10 9 32 32 H 0.97005 * 119.99783 * 345.00613 * 13 12 10 33 33 H 1.09002 * 109.68674 * 50.59297 * 19 17 14 34 34 H 1.09003 * 109.68347 * 290.03470 * 19 17 14 35 35 H 1.09002 * 109.25462 * 171.35959 * 20 19 17 36 36 H 1.08998 * 109.25092 * 290.82885 * 20 19 17 37 37 H 1.08004 * 119.73854 * 359.70316 * 22 21 20 38 38 H 1.07999 * 120.11203 * 180.02562 * 23 22 21 39 39 H 1.07993 * 120.11565 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.72192 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.25056 * 222.14790 * 27 26 21 42 42 H 1.08997 * 109.25912 * 102.71858 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0491 -3.7516 0.0017 14 16 7.6312 -4.0707 -0.3693 15 8 7.8489 -3.3853 -1.5949 16 8 7.7303 -5.4862 -0.2940 17 6 8.5758 -3.2943 0.9707 18 1 8.3650 -2.2252 0.9967 19 6 10.0753 -3.5192 0.7431 20 6 10.8480 -2.6582 1.7403 21 6 10.3376 -2.8827 3.1396 22 6 11.1466 -2.4793 4.1951 23 6 10.7341 -2.6518 5.4999 24 6 9.5057 -3.2303 5.7608 25 6 8.7021 -3.6326 4.7144 26 6 9.1164 -3.4613 3.3996 27 6 8.1912 -3.9277 2.3063 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3633 -0.0004 30 1 5.9241 -1.8560 0.8907 31 1 5.9241 -1.8574 -0.8893 32 1 5.4458 -4.4793 0.2193 33 1 10.3398 -3.2298 -0.2740 34 1 10.3171 -4.5703 0.9009 35 1 11.9054 -2.9196 1.6971 36 1 10.7265 -1.6074 1.4777 37 1 12.1063 -2.0273 3.9921 38 1 11.3681 -2.3354 6.3149 39 1 9.1770 -3.3677 6.7803 40 1 7.7429 -4.0848 4.9190 41 1 7.1684 -3.6459 2.5564 42 1 8.2538 -5.0125 2.2208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915614679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:00 Heat of formation + Delta-G solvation = -90.537557 kcal Electronic energy + Delta-G solvation = -26898.948258 eV Core-core repulsion = 22970.458156 eV Total energy + Delta-G solvation = -3928.490101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31777 -38.66023 -37.17377 -36.52711 -35.99651 -34.80278 -33.84275 -32.90537 -31.80250 -30.74155 -29.22919 -27.39977 -24.46807 -24.15322 -23.37089 -22.46147 -20.22655 -19.67516 -19.13265 -18.71639 -17.73160 -17.17554 -16.55786 -16.32971 -15.77626 -15.54712 -15.16435 -15.01369 -14.87704 -14.60409 -14.43539 -14.35131 -13.64908 -13.54068 -13.26747 -13.16503 -12.74257 -12.67812 -12.48072 -12.43157 -12.14864 -12.08077 -12.04121 -11.87177 -11.80205 -11.64063 -11.51792 -11.27143 -10.94188 -10.67686 -10.43350 -10.07558 -9.71481 -9.44420 -9.03624 -8.84715 -8.76080 -8.31625 -6.41484 -3.94198 0.15228 1.07709 1.09376 2.65304 2.95254 3.01097 3.09908 3.45284 3.53130 3.65985 3.85356 4.01454 4.06208 4.28728 4.41608 4.50620 4.58876 4.67507 4.72324 4.80388 4.98533 5.02146 5.10633 5.11205 5.18176 5.20936 5.36899 5.39903 5.43687 5.48316 5.55084 5.63635 5.66721 5.75208 5.82163 5.95921 6.19003 6.24723 6.36208 6.72987 7.16359 7.44104 8.00703 8.44569 8.81607 9.28677 9.63179 10.70906 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011875 B = 0.003232 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.296450 B = 8661.137517 C = 9875.039381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.444 3.556 11 O -0.570 6.570 12 C 0.101 3.899 13 N -1.098 6.098 14 S 2.618 3.382 15 O -0.954 6.954 16 O -0.953 6.953 17 C -0.595 4.595 18 H 0.141 0.859 19 C -0.106 4.106 20 C -0.072 4.072 21 C -0.077 4.077 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.067 4.067 27 C -0.065 4.065 28 H 0.275 0.725 29 H 0.373 0.627 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.428 0.572 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.690 -2.103 8.636 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.218 5.218 10 C 0.229 3.771 11 O -0.453 6.453 12 C -0.030 4.030 13 N -0.862 5.862 14 S 2.710 3.290 15 O -0.944 6.944 16 O -0.944 6.944 17 C -0.703 4.703 18 H 0.159 0.841 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.077 4.077 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.068 4.068 27 C -0.103 4.103 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.114 0.886 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 24.451 -3.015 7.820 25.848 hybrid contribution 0.264 1.683 0.848 1.903 sum 24.715 -1.332 8.669 26.225 Atomic orbital electron populations 1.69617 1.05712 1.27776 1.48291 1.25066 0.95522 0.98127 0.97241 0.86675 0.79790 0.83854 0.79122 1.19365 1.20031 1.19357 1.19448 0.78978 0.96808 1.48598 0.86074 1.42150 1.07722 1.06057 1.65878 1.19480 0.87792 0.84860 0.84989 1.90557 1.68828 1.30946 1.54928 1.20991 0.96421 0.82875 1.02718 1.55163 1.28061 1.14588 1.88406 1.04871 0.73700 0.74604 0.75872 1.93603 1.84978 1.76360 1.39441 1.93594 1.85446 1.27998 1.87321 1.30606 1.09733 1.14222 1.15785 0.84064 1.21375 0.90133 1.02248 1.00690 1.20384 0.99544 1.00478 0.90549 1.19585 0.93960 0.98863 0.95282 1.21146 0.99687 1.00633 0.92434 1.21077 0.96642 0.99738 0.96609 1.21088 0.94665 0.99080 0.99073 1.21213 1.00172 1.00152 0.91939 1.19377 0.94374 0.99012 0.94004 1.20247 0.99480 1.01029 0.89505 0.91398 0.79375 0.90210 0.88618 0.73267 0.89768 0.89674 0.89943 0.89986 0.86158 0.86138 0.85979 0.85711 0.88645 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.81 13.96 55.50 0.77 -24.03 16 2 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 18.53 27.74 -169.99 -4.71 13.82 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.04 6.52 56.52 0.37 -4.67 16 7 C -0.31 -8.42 10.16 -14.93 -0.15 -8.58 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.04 5.09 -10.97 -0.06 -13.10 16 10 C 0.44 9.44 7.85 -10.99 -0.09 9.35 16 11 O -0.57 -14.37 15.30 5.55 0.08 -14.28 16 12 C 0.10 1.50 6.61 -5.20 -0.03 1.47 16 13 N -1.10 -15.70 5.74 -11.66 -0.07 -15.77 16 14 S 2.62 33.17 4.92 -107.50 -0.53 32.64 16 15 O -0.95 -14.82 17.50 -57.54 -1.01 -15.83 16 16 O -0.95 -14.42 17.69 -57.54 -1.02 -15.44 16 17 C -0.60 -5.41 2.77 -26.70 -0.07 -5.48 16 18 H 0.14 1.05 8.10 -51.92 -0.42 0.63 16 19 C -0.11 -0.84 5.29 -26.70 -0.14 -0.98 16 20 C -0.07 -0.51 5.67 -28.05 -0.16 -0.67 16 21 C -0.08 -0.69 5.74 -104.61 -0.60 -1.29 16 22 C -0.12 -0.99 9.61 -39.42 -0.38 -1.36 16 23 C -0.12 -0.98 10.05 -39.68 -0.40 -1.38 16 24 C -0.12 -1.03 10.05 -39.68 -0.40 -1.42 16 25 C -0.12 -1.09 9.61 -39.44 -0.38 -1.46 16 26 C -0.07 -0.64 5.74 -104.64 -0.60 -1.24 16 27 C -0.07 -0.60 4.90 -28.05 -0.14 -0.74 16 28 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.37 7.22 5.76 -40.82 -0.24 6.99 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.10 1.29 7.69 -51.93 -0.40 0.89 16 32 H 0.43 6.60 7.67 -34.47 -0.26 6.33 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.12 0.74 8.05 -52.48 -0.42 0.31 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 1.01 8.05 -52.49 -0.42 0.59 16 41 H 0.10 0.83 8.13 -51.93 -0.42 0.41 16 42 H 0.10 0.87 7.79 -51.93 -0.40 0.46 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -35.80 361.90 -10.22 -46.02 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.50 Total: 13.24 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.64 Total: -12.71 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.65 Total: -52.90 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.94 Total: -45.55 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.71 Total: 13.82 kcal Atomic # 16 Polarization: 33.17 SS G_CDS: -0.53 Total: 32.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.80 -10.22 -46.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915614679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.521 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds