Wall clock time and date at job start Tue Mar 31 2020 21:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47069 * 269.99938 * 3 2 1 5 5 H 1.48501 * 109.47134 * 29.99701 * 3 2 1 6 6 H 1.48503 * 109.47156 * 149.99687 * 3 2 1 7 7 C 1.38949 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00370 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99821 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00232 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99678 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00456 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47627 * 180.02562 * 12 10 9 14 14 S 1.65597 * 120.00307 * 165.00274 * 13 12 10 15 15 O 1.42102 * 104.27827 * 308.93011 * 14 13 12 16 16 O 1.42099 * 104.28216 * 181.07463 * 14 13 12 17 17 C 1.81396 * 104.45238 * 65.00274 * 14 13 12 18 18 H 1.09004 * 109.67948 * 300.52345 * 17 14 13 19 19 C 1.53327 * 109.68659 * 180.02562 * 17 14 13 20 20 C 1.52737 * 108.37332 * 170.31614 * 19 17 14 21 21 C 1.50635 * 110.55571 * 51.09154 * 20 19 17 22 22 C 1.38965 * 117.71055 * 162.54684 * 21 20 19 23 23 C 1.37931 * 120.53276 * 179.72587 * 22 21 20 24 24 C 1.38267 * 119.77289 * 359.97438 * 23 22 21 25 25 C 1.37938 * 119.76758 * 0.09636 * 24 23 22 26 26 C 1.37613 * 122.60603 * 342.39378 * 21 20 19 27 27 C 1.50631 * 122.55546 * 0.43859 * 26 21 20 28 28 H 0.96997 * 120.00326 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00170 * 0.02562 * 9 7 2 30 30 H 1.09008 * 109.46782 * 60.00627 * 12 10 9 31 31 H 1.08997 * 109.47318 * 300.01070 * 12 10 9 32 32 H 0.97005 * 119.99783 * 345.00613 * 13 12 10 33 33 H 1.09002 * 109.68674 * 50.59297 * 19 17 14 34 34 H 1.09003 * 109.68347 * 290.03470 * 19 17 14 35 35 H 1.09002 * 109.25462 * 171.35959 * 20 19 17 36 36 H 1.08998 * 109.25092 * 290.82885 * 20 19 17 37 37 H 1.08004 * 119.73854 * 359.70316 * 22 21 20 38 38 H 1.07999 * 120.11203 * 180.02562 * 23 22 21 39 39 H 1.07993 * 120.11565 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.72192 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.25056 * 222.14790 * 27 26 21 42 42 H 1.08997 * 109.25912 * 102.71858 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0491 -3.7516 0.0017 14 16 7.6312 -4.0707 -0.3693 15 8 7.8489 -3.3853 -1.5949 16 8 7.7303 -5.4862 -0.2940 17 6 8.5758 -3.2943 0.9707 18 1 8.3650 -2.2252 0.9967 19 6 10.0753 -3.5192 0.7431 20 6 10.8480 -2.6582 1.7403 21 6 10.3376 -2.8827 3.1396 22 6 11.1466 -2.4793 4.1951 23 6 10.7341 -2.6518 5.4999 24 6 9.5057 -3.2303 5.7608 25 6 8.7021 -3.6326 4.7144 26 6 9.1164 -3.4613 3.3996 27 6 8.1912 -3.9277 2.3063 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3633 -0.0004 30 1 5.9241 -1.8560 0.8907 31 1 5.9241 -1.8574 -0.8893 32 1 5.4458 -4.4793 0.2193 33 1 10.3398 -3.2298 -0.2740 34 1 10.3171 -4.5703 0.9009 35 1 11.9054 -2.9196 1.6971 36 1 10.7265 -1.6074 1.4777 37 1 12.1063 -2.0273 3.9921 38 1 11.3681 -2.3354 6.3149 39 1 9.1770 -3.3677 6.7803 40 1 7.7429 -4.0848 4.9190 41 1 7.1684 -3.6459 2.5564 42 1 8.2538 -5.0125 2.2208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915614679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:59 Heat of formation + Delta-G solvation = -118.108927 kcal Electronic energy + Delta-G solvation = -26900.143842 eV Core-core repulsion = 22970.458156 eV Total energy + Delta-G solvation = -3929.685686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92029 -40.40176 -38.27113 -37.18685 -37.07886 -36.35974 -35.43539 -33.79190 -33.51742 -31.36718 -29.84011 -28.90304 -25.96954 -25.07163 -24.01058 -23.05242 -21.48950 -20.94964 -20.49936 -20.03050 -18.91840 -18.05836 -17.52373 -17.31345 -17.07720 -16.68871 -16.49933 -16.17696 -15.81713 -15.69791 -15.28161 -15.07011 -14.96000 -14.38682 -14.28321 -14.24767 -14.14182 -13.94772 -13.73563 -13.37077 -13.22525 -13.16874 -13.10814 -12.95509 -12.72932 -12.48886 -12.41478 -12.26032 -12.12834 -11.96891 -11.54634 -11.53187 -11.22625 -10.68529 -10.40288 -10.27999 -9.63659 -9.44715 -8.42520 -6.04909 -0.83290 0.46912 0.49543 1.31885 1.37632 1.46608 1.61082 1.86365 2.23825 2.68752 2.84798 2.87700 3.05731 3.14030 3.33026 3.57975 3.81198 3.84663 3.98163 4.03690 4.14020 4.26680 4.31757 4.38208 4.44272 4.46816 4.53352 4.63214 4.68656 4.74599 4.80352 4.89502 4.97522 5.11101 5.17536 5.25993 5.52432 5.60576 5.66299 5.75106 5.86325 5.99052 6.15557 6.54160 6.83231 7.33562 7.86535 8.74530 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011875 B = 0.003232 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.296450 B = 8661.137517 C = 9875.039381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.223 1.223 7 C -0.332 4.332 8 H 0.057 0.943 9 N -0.581 5.581 10 C 0.445 3.555 11 O -0.617 6.617 12 C 0.106 3.894 13 N -1.110 6.110 14 S 2.623 3.377 15 O -0.985 6.985 16 O -0.986 6.986 17 C -0.565 4.565 18 H 0.170 0.830 19 C -0.115 4.115 20 C -0.069 4.069 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.070 4.070 28 H 0.280 0.720 29 H 0.394 0.606 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.422 0.578 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.768 0.639 9.590 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.212 4.212 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.145 1.145 7 C -0.461 4.461 8 H 0.075 0.925 9 N -0.222 5.222 10 C 0.232 3.768 11 O -0.502 6.502 12 C -0.023 4.023 13 N -0.871 5.871 14 S 2.720 3.280 15 O -0.975 6.975 16 O -0.976 6.976 17 C -0.678 4.678 18 H 0.187 0.813 19 C -0.154 4.154 20 C -0.107 4.107 21 C -0.087 4.087 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.084 4.084 27 C -0.107 4.107 28 H 0.090 0.910 29 H 0.230 0.770 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.258 0.742 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 28.532 -0.302 8.735 29.841 hybrid contribution -0.972 0.669 0.617 1.331 sum 27.561 0.367 9.353 29.107 Atomic orbital electron populations 1.69801 1.08269 1.29423 1.49648 1.26147 0.96452 1.02853 0.95738 0.85417 0.79874 0.76562 0.80051 1.18268 1.20106 1.14537 1.19016 0.81336 0.95073 1.50716 0.92453 1.41942 1.05939 1.07551 1.66771 1.20710 0.90615 0.83627 0.81878 1.90544 1.70884 1.32786 1.56020 1.21147 0.90877 0.83963 1.06350 1.55238 1.28789 1.14185 1.88839 1.04650 0.73206 0.73885 0.76260 1.93557 1.85183 1.76503 1.42244 1.93548 1.85670 1.30384 1.88023 1.30347 1.09592 1.15005 1.12876 0.81267 1.21563 0.89034 1.02804 1.02006 1.20447 1.00274 1.00987 0.88967 1.19862 0.93720 0.98615 0.96514 1.21452 1.00441 1.00319 0.92262 1.21399 0.96634 0.99193 0.97456 1.21340 0.94998 0.99087 0.99607 1.21393 1.00713 1.00764 0.92376 1.19454 0.94986 0.99996 0.93933 1.20300 0.99951 1.00913 0.89567 0.91038 0.76994 0.84959 0.86312 0.74159 0.88368 0.89765 0.88069 0.88554 0.84045 0.84232 0.84729 0.85522 0.88205 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.96 21.66 0.30 -54.57 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.96 36.78 27.74 68.60 1.90 38.68 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.22 -6.82 6.52 99.48 0.65 -6.17 16 7 C -0.33 -18.76 10.16 84.04 0.85 -17.90 16 8 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 9 N -0.58 -25.71 5.09 -306.99 -1.56 -27.27 16 10 C 0.44 18.73 7.85 87.65 0.69 19.42 16 11 O -0.62 -32.33 15.30 -3.06 -0.05 -32.38 16 12 C 0.11 2.87 6.61 85.63 0.57 3.44 16 13 N -1.11 -30.43 5.74 -190.81 -1.10 -31.53 16 14 S 2.62 62.69 4.92 -56.49 -0.28 62.41 16 15 O -0.98 -28.94 17.50 -127.65 -2.23 -31.17 16 16 O -0.99 -29.79 17.69 -127.65 -2.26 -32.05 16 17 C -0.57 -8.50 2.77 30.62 0.08 -8.42 16 18 H 0.17 1.66 8.10 -2.39 -0.02 1.65 16 19 C -0.11 -1.45 5.29 30.62 0.16 -1.29 16 20 C -0.07 -0.70 5.67 29.74 0.17 -0.53 16 21 C -0.09 -1.27 5.74 -19.86 -0.11 -1.38 16 22 C -0.13 -1.64 9.61 22.37 0.21 -1.43 16 23 C -0.13 -1.71 10.05 22.20 0.22 -1.49 16 24 C -0.13 -1.99 10.05 22.21 0.22 -1.77 16 25 C -0.13 -2.30 9.61 22.36 0.21 -2.08 16 26 C -0.08 -1.40 5.74 -19.87 -0.11 -1.52 16 27 C -0.07 -1.15 4.90 29.74 0.15 -1.00 16 28 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.39 13.93 5.76 -92.71 -0.53 13.40 16 30 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.12 2.75 7.69 -2.39 -0.02 2.73 16 32 H 0.42 13.15 7.67 -96.74 -0.74 12.41 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.10 0.69 8.13 -2.39 -0.02 0.67 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.14 1.15 8.05 -2.91 -0.02 1.13 16 38 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.13 1.96 8.05 -2.91 -0.02 1.94 16 41 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 42 H 0.09 1.57 7.79 -2.39 -0.02 1.55 16 Total: -1.00 -84.23 361.90 -1.76 -85.99 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.27 Total: 38.06 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 3.78 Total: -16.17 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -2.36 Total: -113.37 kcal Atomic # 8 Polarization: -91.06 SS G_CDS: -4.54 Total: -95.60 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 1.90 Total: 38.68 kcal Atomic # 16 Polarization: 62.69 SS G_CDS: -0.28 Total: 62.41 kcal Total: -84.23 -1.76 -85.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915614679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.120 kcal (2) G-P(sol) polarization free energy of solvation -84.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds