Wall clock time and date at job start Tue Mar 31 2020 21:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47088 * 2 1 4 4 C 1.34222 * 117.00244 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00314 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.47133 * 305.00662 * 6 4 3 8 8 C 1.53002 * 109.46770 * 65.00019 * 6 4 3 9 9 C 1.50704 * 109.47057 * 185.00224 * 8 6 4 10 10 C 1.38238 * 119.99789 * 269.72741 * 9 8 6 11 11 C 1.38239 * 119.99608 * 179.76560 * 10 9 8 12 12 C 1.38231 * 119.99774 * 0.50790 * 11 10 9 13 13 C 1.38234 * 120.00553 * 359.74304 * 12 11 10 14 14 C 1.38231 * 119.99732 * 90.00093 * 9 8 6 15 15 O 1.45198 * 109.47348 * 185.00044 * 6 4 3 16 16 C 1.34221 * 116.99903 * 90.00141 * 15 6 4 17 17 O 1.20826 * 120.00367 * 359.97438 * 16 15 6 18 18 C 1.50706 * 120.00092 * 180.02562 * 16 15 6 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47767 * 59.99657 * 24 22 20 26 26 H 1.48505 * 109.46944 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46958 * 299.99344 * 24 22 20 28 28 H 1.08998 * 109.47347 * 299.99365 * 1 2 3 29 29 H 1.09004 * 109.47228 * 59.99917 * 1 2 3 30 30 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47145 * 240.00366 * 2 1 3 32 32 H 1.08994 * 109.47361 * 120.00068 * 2 1 3 33 33 H 1.09006 * 109.47352 * 304.99922 * 8 6 4 34 34 H 1.09004 * 109.47362 * 64.99866 * 8 6 4 35 35 H 1.07997 * 119.99939 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.99585 * 180.22986 * 11 10 9 37 37 H 1.08007 * 119.99682 * 179.72554 * 12 11 10 38 38 H 1.07994 * 120.00434 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.00444 * 359.97438 * 14 9 8 40 40 H 1.09001 * 109.46953 * 299.99668 * 18 16 15 41 41 H 1.09000 * 109.47318 * 59.99266 * 18 16 15 42 42 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5144 3.4991 -0.8412 8 6 3.5529 3.6410 1.3080 9 6 4.0224 5.0721 1.2580 10 6 5.2859 5.4012 1.7120 11 6 5.7184 6.7132 1.6616 12 6 4.8835 7.6976 1.1669 13 6 3.6181 7.3693 0.7177 14 6 3.1875 6.0565 0.7633 15 8 5.3658 2.8636 -0.1200 16 6 5.8753 2.8732 -1.3617 17 8 5.1383 2.9406 -2.3168 18 6 7.3668 2.7987 -1.5648 19 16 7.7369 2.8309 -3.3363 20 6 9.4955 2.7352 -3.2832 21 1 10.0049 2.6805 -2.3324 22 6 10.2262 2.7313 -4.4633 23 7 9.6054 2.7985 -5.6220 24 14 12.0905 2.6292 -4.4070 25 1 12.4973 1.3722 -3.7290 26 1 12.6289 2.6411 -5.7910 27 1 12.6275 3.7926 -3.6565 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.4712 3.6179 1.4413 34 1 4.0327 3.1300 2.1428 35 1 5.9363 4.6328 2.1030 36 1 6.7069 6.9698 2.0130 37 1 5.2198 8.7234 1.1317 38 1 2.9657 8.1385 0.3316 39 1 2.1989 5.8000 0.4122 40 1 7.8427 3.6502 -1.0783 41 1 7.7468 1.8737 -1.1313 42 1 10.1160 2.7954 -6.4467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919083747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:13 Heat of formation + Delta-G solvation = -152.780951 kcal Electronic energy + Delta-G solvation = -26425.985752 eV Core-core repulsion = 22462.503824 eV Total energy + Delta-G solvation = -3963.481928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10082 -39.84819 -39.26229 -36.96234 -36.19671 -33.85134 -32.47636 -31.98245 -30.97870 -30.25611 -29.04605 -25.57630 -25.37392 -23.41613 -22.70232 -21.87620 -21.32577 -20.53058 -18.27372 -17.95888 -17.46220 -17.14199 -16.63669 -16.58065 -15.79755 -15.34708 -15.18576 -15.09719 -14.83722 -14.38282 -14.14800 -13.83682 -13.52384 -13.32779 -13.14548 -13.05905 -12.86069 -12.69059 -12.53858 -12.37905 -12.16251 -11.88329 -11.59757 -11.37510 -11.24603 -11.09930 -11.08395 -11.05279 -10.82132 -10.75733 -10.28544 -10.09211 -9.91188 -9.09783 -8.99680 -8.85244 -8.36290 -6.59376 -6.26254 -3.98911 1.17925 1.32510 1.99190 2.06158 2.56039 2.78336 3.22708 3.23751 3.27798 3.48217 3.65727 4.15525 4.26661 4.53846 4.62998 4.66408 4.68883 4.74038 4.86715 4.92088 4.97347 5.01495 5.05747 5.09524 5.25940 5.37135 5.40634 5.48865 5.49782 5.50342 5.60088 5.67470 5.77911 5.88746 5.95788 6.07869 6.19290 6.35325 6.42949 6.45937 6.51528 6.90151 7.52535 7.56059 8.05300 8.31136 9.19007 10.81263 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.003402 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.572620 B = 8227.543911 C =10587.548220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.449 3.551 5 O -0.485 6.485 6 C 0.105 3.895 7 H 0.124 0.876 8 C -0.068 4.068 9 C -0.091 4.091 10 C -0.098 4.098 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.113 4.113 15 O -0.326 6.326 16 C 0.483 3.517 17 O -0.485 6.485 18 C -0.126 4.126 19 S -0.056 6.056 20 C -0.536 4.536 21 H 0.076 0.924 22 C 0.075 3.925 23 N -0.868 5.868 24 Si 0.922 3.078 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.050 3.633 17.226 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.272 6.272 4 C 0.290 3.710 5 O -0.370 6.370 6 C 0.047 3.953 7 H 0.142 0.858 8 C -0.105 4.105 9 C -0.091 4.091 10 C -0.116 4.116 11 C -0.137 4.137 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.131 4.131 15 O -0.244 6.244 16 C 0.324 3.676 17 O -0.369 6.369 18 C -0.274 4.274 19 S 0.170 5.830 20 C -0.684 4.684 21 H 0.094 0.906 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.748 3.252 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.785 3.386 15.845 24.059 hybrid contribution 2.004 -0.389 0.877 2.222 sum -15.781 2.998 16.722 23.187 Atomic orbital electron populations 1.21808 0.92378 1.03067 1.03592 1.23091 0.95434 0.79889 1.02940 1.86462 1.23800 1.32848 1.84103 1.23920 0.81185 0.92718 0.73153 1.90726 1.60316 1.42473 1.43525 1.22025 0.80677 0.90067 1.02500 0.85812 1.20657 1.02747 0.92261 0.94806 1.19590 0.95029 0.94034 1.00468 1.21134 0.95162 0.96563 0.98783 1.21193 0.99737 0.93056 0.99736 1.21199 0.94272 0.99486 0.98666 1.21121 0.96447 0.96327 1.00041 1.21069 0.99710 0.92886 0.99437 1.86708 1.20660 1.84206 1.32776 1.23486 0.92166 0.71677 0.80246 1.90666 1.60880 1.44130 1.41246 1.23299 0.88782 1.06595 1.08685 1.85414 1.07752 1.96559 0.93231 1.22802 0.90659 1.59246 0.95720 0.90597 1.24998 0.99707 0.94335 0.94430 1.70003 1.36299 1.46463 0.97498 0.86176 0.82694 0.78939 0.77435 1.19819 1.20772 1.19822 0.91449 0.91295 0.90137 0.90922 0.91070 0.87588 0.88986 0.85560 0.85876 0.86116 0.86020 0.85869 0.87742 0.87646 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.35 -4.28 10.19 -39.24 -0.40 -4.67 16 4 C 0.45 6.61 7.26 36.01 0.26 6.87 16 5 O -0.49 -8.75 16.26 -25.40 -0.41 -9.16 16 6 C 0.10 1.44 2.45 -27.88 -0.07 1.37 16 7 H 0.12 1.75 7.16 -51.93 -0.37 1.38 16 8 C -0.07 -0.67 5.04 -27.88 -0.14 -0.81 16 9 C -0.09 -0.99 4.97 -104.62 -0.52 -1.51 16 10 C -0.10 -1.11 9.41 -39.58 -0.37 -1.48 16 11 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 12 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 13 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 14 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 15 O -0.33 -5.42 8.93 -45.88 -0.41 -5.83 16 16 C 0.48 9.72 7.94 36.01 0.29 10.01 16 17 O -0.48 -10.95 15.08 -18.75 -0.28 -11.24 16 18 C -0.13 -2.67 6.27 36.01 0.23 -2.44 16 19 S -0.06 -1.52 20.58 -107.50 -2.21 -3.73 16 20 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 21 H 0.08 2.04 7.80 -52.48 -0.41 1.63 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 24 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.11 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.10 2.02 8.14 -51.92 -0.42 1.59 16 41 H 0.11 2.13 8.14 -51.92 -0.42 1.71 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -35.19 386.47 -9.10 -44.30 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.83 Total: 0.54 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.09 Total: -7.09 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.73 Total: -25.27 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.51 Total: -30.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.19 -9.10 -44.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919083747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.484 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds