Wall clock time and date at job start Tue Mar 31 2020 21:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47088 * 2 1 4 4 C 1.34222 * 117.00244 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00314 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.47133 * 305.00662 * 6 4 3 8 8 C 1.53002 * 109.46770 * 65.00019 * 6 4 3 9 9 C 1.50704 * 109.47057 * 185.00224 * 8 6 4 10 10 C 1.38238 * 119.99789 * 269.72741 * 9 8 6 11 11 C 1.38239 * 119.99608 * 179.76560 * 10 9 8 12 12 C 1.38231 * 119.99774 * 0.50790 * 11 10 9 13 13 C 1.38234 * 120.00553 * 359.74304 * 12 11 10 14 14 C 1.38231 * 119.99732 * 90.00093 * 9 8 6 15 15 O 1.45198 * 109.47348 * 185.00044 * 6 4 3 16 16 C 1.34221 * 116.99903 * 90.00141 * 15 6 4 17 17 O 1.20826 * 120.00367 * 359.97438 * 16 15 6 18 18 C 1.50706 * 120.00092 * 180.02562 * 16 15 6 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47767 * 59.99657 * 24 22 20 26 26 H 1.48505 * 109.46944 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46958 * 299.99344 * 24 22 20 28 28 H 1.08998 * 109.47347 * 299.99365 * 1 2 3 29 29 H 1.09004 * 109.47228 * 59.99917 * 1 2 3 30 30 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47145 * 240.00366 * 2 1 3 32 32 H 1.08994 * 109.47361 * 120.00068 * 2 1 3 33 33 H 1.09006 * 109.47352 * 304.99922 * 8 6 4 34 34 H 1.09004 * 109.47362 * 64.99866 * 8 6 4 35 35 H 1.07997 * 119.99939 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.99585 * 180.22986 * 11 10 9 37 37 H 1.08007 * 119.99682 * 179.72554 * 12 11 10 38 38 H 1.07994 * 120.00434 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.00444 * 359.97438 * 14 9 8 40 40 H 1.09001 * 109.46953 * 299.99668 * 18 16 15 41 41 H 1.09000 * 109.47318 * 59.99266 * 18 16 15 42 42 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5144 3.4991 -0.8412 8 6 3.5529 3.6410 1.3080 9 6 4.0224 5.0721 1.2580 10 6 5.2859 5.4012 1.7120 11 6 5.7184 6.7132 1.6616 12 6 4.8835 7.6976 1.1669 13 6 3.6181 7.3693 0.7177 14 6 3.1875 6.0565 0.7633 15 8 5.3658 2.8636 -0.1200 16 6 5.8753 2.8732 -1.3617 17 8 5.1383 2.9406 -2.3168 18 6 7.3668 2.7987 -1.5648 19 16 7.7369 2.8309 -3.3363 20 6 9.4955 2.7352 -3.2832 21 1 10.0049 2.6805 -2.3324 22 6 10.2262 2.7313 -4.4633 23 7 9.6054 2.7985 -5.6220 24 14 12.0905 2.6292 -4.4070 25 1 12.4973 1.3722 -3.7290 26 1 12.6289 2.6411 -5.7910 27 1 12.6275 3.7926 -3.6565 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.4712 3.6179 1.4413 34 1 4.0327 3.1300 2.1428 35 1 5.9363 4.6328 2.1030 36 1 6.7069 6.9698 2.0130 37 1 5.2198 8.7234 1.1317 38 1 2.9657 8.1385 0.3316 39 1 2.1989 5.8000 0.4122 40 1 7.8427 3.6502 -1.0783 41 1 7.7468 1.8737 -1.1313 42 1 10.1160 2.7954 -6.4467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919083747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:13 Heat of formation + Delta-G solvation = -171.076512 kcal Electronic energy + Delta-G solvation = -26426.779107 eV Core-core repulsion = 22462.503824 eV Total energy + Delta-G solvation = -3964.275284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35788 -41.16960 -40.09565 -38.20099 -37.51636 -34.83586 -34.62816 -32.70911 -31.73608 -31.66395 -30.24990 -27.72978 -26.29395 -24.31136 -23.49419 -23.09071 -22.21029 -21.73184 -20.00959 -19.32570 -18.98230 -18.24712 -17.75787 -17.44160 -17.26212 -16.90883 -16.64360 -16.21249 -16.00417 -15.84972 -15.32724 -14.85841 -14.66907 -14.52214 -14.25732 -14.12843 -13.95887 -13.82815 -13.63997 -13.30045 -13.21909 -13.01099 -12.89660 -12.83361 -12.69366 -12.63355 -12.53884 -12.09797 -11.86775 -11.83020 -11.73993 -11.62768 -11.40673 -11.15961 -10.43024 -9.77369 -9.65102 -8.76539 -8.38889 -6.19325 0.36472 0.54578 0.72354 0.86601 0.96518 1.33429 1.43986 1.44489 1.53908 1.82423 2.22308 2.84927 2.96126 3.20104 3.31453 3.55436 3.66944 3.70930 3.92612 3.95437 4.01508 4.04221 4.10457 4.20338 4.29337 4.33874 4.36341 4.43526 4.63768 4.72588 4.75645 4.79964 4.90749 4.99924 5.05037 5.15376 5.21144 5.31078 5.39139 5.59428 5.67096 5.69135 6.14972 6.16317 6.35674 6.53791 7.02440 8.70290 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.003402 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.572620 B = 8227.543911 C =10587.548220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.346 6.346 4 C 0.453 3.547 5 O -0.525 6.525 6 C 0.101 3.899 7 H 0.122 0.878 8 C -0.057 4.057 9 C -0.104 4.104 10 C -0.116 4.116 11 C -0.134 4.134 12 C -0.128 4.128 13 C -0.131 4.131 14 C -0.120 4.120 15 O -0.318 6.318 16 C 0.490 3.510 17 O -0.515 6.515 18 C -0.107 4.107 19 S -0.132 6.132 20 C -0.550 4.550 21 H 0.086 0.914 22 C 0.017 3.983 23 N -0.910 5.910 24 Si 1.000 3.000 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 4.076 18.939 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.262 6.262 4 C 0.295 3.705 5 O -0.414 6.414 6 C 0.044 3.956 7 H 0.139 0.861 8 C -0.093 4.093 9 C -0.104 4.104 10 C -0.134 4.134 11 C -0.152 4.152 12 C -0.146 4.146 13 C -0.149 4.149 14 C -0.138 4.138 15 O -0.234 6.234 16 C 0.333 3.667 17 O -0.403 6.403 18 C -0.255 4.255 19 S 0.095 5.905 20 C -0.698 4.698 21 H 0.104 0.896 22 C -0.188 4.188 23 N -0.546 5.546 24 Si 0.821 3.179 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.184 1.184 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.189 3.839 17.593 25.594 hybrid contribution 1.949 -0.518 0.436 2.063 sum -16.240 3.321 18.029 24.491 Atomic orbital electron populations 1.21833 0.89482 1.04616 1.04116 1.23429 0.97641 0.78649 1.02640 1.86468 1.22131 1.34344 1.83291 1.24077 0.81828 0.92495 0.72063 1.90711 1.61335 1.43663 1.45673 1.22440 0.78542 0.90054 1.04588 0.86066 1.20732 1.04562 0.91388 0.92668 1.19726 0.95168 0.94529 1.00999 1.21319 0.95654 0.97008 0.99433 1.21440 1.00538 0.93165 1.00071 1.21515 0.94457 1.00334 0.98272 1.21467 0.96738 0.96940 0.99708 1.21389 1.00574 0.92911 0.98929 1.86665 1.22954 1.83470 1.30343 1.23163 0.91603 0.71073 0.80901 1.90654 1.61456 1.45704 1.42458 1.23085 0.90245 1.08144 1.04064 1.85508 1.08735 1.96841 0.99454 1.23161 0.90762 1.59361 0.96495 0.89589 1.26123 1.05423 0.93463 0.93799 1.70157 1.38547 1.47495 0.98362 0.84983 0.75533 0.79571 0.77808 1.18758 1.20219 1.18445 0.90215 0.91428 0.88068 0.92302 0.90455 0.84610 0.88104 0.85477 0.84826 0.84421 0.84015 0.83874 0.85569 0.86465 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.35 -7.93 10.19 -51.34 -0.52 -8.45 16 4 C 0.45 13.07 7.26 71.24 0.52 13.59 16 5 O -0.53 -19.05 16.26 28.30 0.46 -18.59 16 6 C 0.10 2.68 2.45 29.85 0.07 2.76 16 7 H 0.12 3.36 7.16 -2.39 -0.02 3.34 16 8 C -0.06 -1.02 5.04 29.85 0.15 -0.87 16 9 C -0.10 -2.10 4.97 -19.86 -0.10 -2.20 16 10 C -0.12 -2.50 9.41 22.27 0.21 -2.30 16 11 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 12 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 13 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 14 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 15 O -0.32 -10.42 8.93 -44.97 -0.40 -10.82 16 16 C 0.49 19.82 7.94 71.24 0.57 20.38 16 17 O -0.52 -23.77 15.08 21.96 0.33 -23.43 16 18 C -0.11 -4.54 6.27 71.24 0.45 -4.10 16 19 S -0.13 -7.37 20.58 -56.49 -1.16 -8.53 16 20 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 21 H 0.09 4.56 7.80 -2.91 -0.02 4.54 16 22 C 0.02 0.97 5.49 84.86 0.47 1.44 16 23 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 24 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 32 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 33 H 0.14 1.64 8.06 -2.38 -0.02 1.62 16 34 H 0.10 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 41 H 0.12 4.69 8.14 -2.40 -0.02 4.67 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -77.52 386.47 7.09 -70.44 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.02 Total: 19.44 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.05 Total: -10.38 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.29 Total: -55.12 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -0.13 Total: -61.30 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.16 Total: -8.53 kcal Total: -77.52 7.09 -70.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919083747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.641 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds