Wall clock time and date at job start Tue Mar 31 2020 21:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47350 * 2 1 4 4 C 1.34228 * 117.00563 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99356 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00421 * 180.02562 * 4 3 2 7 7 H 1.09007 * 109.47204 * 55.00155 * 6 4 3 8 8 C 1.52995 * 109.47090 * 295.00188 * 6 4 3 9 9 C 1.50707 * 109.47301 * 174.99821 * 8 6 4 10 10 C 1.38238 * 119.99792 * 90.00016 * 9 8 6 11 11 C 1.38235 * 119.99712 * 179.97438 * 10 9 8 12 12 C 1.38234 * 120.00220 * 359.97124 * 11 10 9 13 13 C 1.38233 * 120.00037 * 0.28719 * 12 11 10 14 14 C 1.38234 * 120.00179 * 269.97953 * 9 8 6 15 15 O 1.45202 * 109.47361 * 174.99809 * 6 4 3 16 16 C 1.34221 * 117.00456 * 270.00372 * 15 6 4 17 17 O 1.20829 * 120.00000 * 359.97438 * 16 15 6 18 18 C 1.50696 * 120.00343 * 180.02562 * 16 15 6 19 19 S 1.81006 * 109.47395 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00091 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00043 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00172 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00285 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46925 * 89.99872 * 24 22 20 26 26 H 1.48496 * 109.47297 * 210.00220 * 24 22 20 27 27 H 1.48504 * 109.47042 * 330.00082 * 24 22 20 28 28 H 1.08992 * 109.47169 * 299.99824 * 1 2 3 29 29 H 1.08996 * 109.46631 * 60.00446 * 1 2 3 30 30 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47596 * 239.99384 * 2 1 3 32 32 H 1.09010 * 109.46913 * 120.00078 * 2 1 3 33 33 H 1.09005 * 109.47610 * 55.00124 * 8 6 4 34 34 H 1.09000 * 109.47256 * 294.99466 * 8 6 4 35 35 H 1.08005 * 120.00068 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.99770 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.99744 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.00395 * 179.72811 * 13 12 11 39 39 H 1.07999 * 119.99968 * 359.97438 * 14 9 8 40 40 H 1.09001 * 109.47172 * 299.99621 * 18 16 15 41 41 H 1.09002 * 109.47640 * 59.99593 * 18 16 15 42 42 H 0.97000 * 120.00585 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5146 3.4982 0.8431 8 6 3.5528 3.6420 -1.3061 9 6 4.0224 5.0731 -1.2548 10 6 5.2880 5.4017 -1.7035 11 6 5.7185 6.7145 -1.6570 12 6 4.8833 7.6987 -1.1623 13 6 3.6198 7.3693 -0.7086 14 6 3.1875 6.0572 -0.7595 15 8 5.3659 2.8633 0.1210 16 6 5.8757 2.8717 1.3626 17 8 5.1388 2.9391 2.3178 18 6 7.3672 2.7982 1.5654 19 16 7.7376 2.8299 3.3368 20 6 9.4962 2.7340 3.2834 21 1 10.0053 2.6785 2.3326 22 6 10.2271 2.7285 4.4634 23 7 11.5408 2.6574 4.4235 24 14 9.3464 2.8237 6.1080 25 1 9.0374 1.4514 6.5841 26 1 10.2180 3.5065 7.0975 27 1 8.0835 3.5887 5.9497 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.4712 3.6192 -1.4393 34 1 4.0326 3.1319 -2.1413 35 1 5.9403 4.6328 -2.0905 36 1 6.7073 6.9712 -2.0072 37 1 5.2196 8.7244 -1.1264 38 1 2.9689 8.1375 -0.3180 39 1 2.1985 5.8006 -0.4096 40 1 7.7478 1.8739 1.1307 41 1 7.8424 3.6506 1.0799 42 1 12.0516 2.6540 5.2481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919083748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:18 Heat of formation + Delta-G solvation = -152.168449 kcal Electronic energy + Delta-G solvation = -26487.671592 eV Core-core repulsion = 22524.216223 eV Total energy + Delta-G solvation = -3963.455368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18086 -39.94028 -39.30923 -37.04255 -36.28943 -33.91412 -32.49014 -32.02822 -31.01065 -30.36623 -29.15212 -25.69577 -25.43754 -23.47916 -22.73678 -21.96967 -21.37322 -20.61759 -18.34104 -18.00685 -17.55322 -17.19638 -16.69994 -16.63246 -15.88947 -15.41963 -15.23000 -15.18971 -14.98548 -14.44307 -14.12020 -13.89286 -13.54995 -13.40378 -13.19173 -13.09993 -12.96905 -12.79992 -12.66262 -12.47342 -12.21809 -11.93353 -11.66645 -11.46334 -11.33555 -11.29642 -11.11807 -11.05018 -10.80763 -10.74687 -10.37590 -10.24009 -9.88031 -9.05192 -9.02995 -8.88918 -8.61976 -7.01984 -6.33107 -4.07261 1.14205 1.29241 1.92246 1.96941 2.39299 2.63312 3.06563 3.29786 3.45489 3.50099 3.62132 4.20976 4.28199 4.47177 4.56039 4.60016 4.64016 4.68567 4.70642 4.81739 4.89042 4.97010 4.98346 5.03884 5.05733 5.27051 5.34340 5.37358 5.45389 5.45923 5.54221 5.63293 5.65142 5.85291 5.92573 5.94775 6.13895 6.31840 6.35451 6.41278 6.45595 6.86867 7.46116 7.89432 7.92002 8.38644 9.11940 10.75979 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.003630 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.687419 B = 7711.293363 C =10030.817779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.449 3.551 5 O -0.485 6.485 6 C 0.105 3.895 7 H 0.125 0.875 8 C -0.068 4.068 9 C -0.092 4.092 10 C -0.098 4.098 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.113 4.113 15 O -0.324 6.324 16 C 0.482 3.518 17 O -0.486 6.486 18 C -0.097 4.097 19 S -0.138 6.138 20 C -0.522 4.522 21 H 0.092 0.908 22 C 0.098 3.902 23 N -0.877 5.877 24 Si 0.855 3.145 25 H -0.266 1.266 26 H -0.272 1.272 27 H -0.236 1.236 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 4.048 -14.881 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.290 3.710 5 O -0.370 6.370 6 C 0.048 3.952 7 H 0.142 0.858 8 C -0.105 4.105 9 C -0.092 4.092 10 C -0.116 4.116 11 C -0.137 4.137 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.131 4.131 15 O -0.241 6.241 16 C 0.324 3.676 17 O -0.371 6.371 18 C -0.245 4.245 19 S 0.088 5.912 20 C -0.669 4.669 21 H 0.110 0.890 22 C -0.111 4.111 23 N -0.513 5.513 24 Si 0.680 3.320 25 H -0.191 1.191 26 H -0.197 1.197 27 H -0.160 1.160 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.320 3.792 -13.608 26.415 hybrid contribution 0.786 -0.334 -0.113 0.861 sum -21.535 3.457 -13.721 25.767 Atomic orbital electron populations 1.21807 0.92350 1.03097 1.03599 1.23096 0.95451 0.79836 1.02960 1.86460 1.23753 1.32897 1.84084 1.23899 0.81225 0.92683 0.73199 1.90730 1.60323 1.42444 1.43500 1.22045 0.80430 0.90130 1.02612 0.85792 1.20660 1.02794 0.92274 0.94757 1.19587 0.95020 0.94008 1.00592 1.21146 0.95147 0.96598 0.98749 1.21207 0.99779 0.93028 0.99662 1.21207 0.94281 0.99515 0.98586 1.21121 0.96469 0.96321 1.00045 1.21065 0.99683 0.92914 0.99478 1.86703 1.20858 1.84091 1.32439 1.23442 0.92112 0.71696 0.80391 1.90664 1.60909 1.44283 1.41284 1.23004 0.88915 1.07505 1.05035 1.84801 1.09884 1.97215 0.99266 1.22255 0.87753 1.58996 0.97911 0.88995 1.24679 0.94355 0.93104 0.98981 1.69924 1.04986 1.47555 1.28843 0.86761 0.81548 0.80141 0.83556 1.19111 1.19748 1.15972 0.91312 0.91423 0.90111 0.91018 0.90943 0.87534 0.88911 0.85502 0.85804 0.86090 0.86030 0.85898 0.86905 0.86948 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.35 -4.08 10.19 -39.25 -0.40 -4.48 16 4 C 0.45 6.33 7.26 36.00 0.26 6.59 16 5 O -0.48 -8.44 16.26 -25.39 -0.41 -8.86 16 6 C 0.11 1.38 2.45 -27.89 -0.07 1.31 16 7 H 0.12 1.65 7.16 -51.92 -0.37 1.28 16 8 C -0.07 -0.64 5.04 -27.88 -0.14 -0.78 16 9 C -0.09 -0.96 4.97 -104.62 -0.52 -1.48 16 10 C -0.10 -1.07 9.40 -39.58 -0.37 -1.44 16 11 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 12 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 13 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 14 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 15 O -0.32 -5.14 8.92 -45.88 -0.41 -5.55 16 16 C 0.48 9.21 7.94 36.00 0.29 9.49 16 17 O -0.49 -10.38 15.08 -18.75 -0.28 -10.66 16 18 C -0.10 -1.96 6.27 36.00 0.23 -1.74 16 19 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 20 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 21 H 0.09 2.75 8.03 -52.49 -0.42 2.32 16 22 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 24 Si 0.86 21.59 27.74 -169.99 -4.71 16.87 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.07 0.74 8.13 -51.92 -0.42 0.32 16 33 H 0.11 0.75 8.06 -51.93 -0.42 0.34 16 34 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.11 2.19 8.14 -51.92 -0.42 1.77 16 41 H 0.11 2.09 8.14 -51.91 -0.42 1.66 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -34.76 383.76 -8.59 -43.35 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.86 Total: 0.50 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.08 Total: -5.93 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.78 Total: -25.55 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.50 Total: -29.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.76 -8.59 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919083748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.816 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds