Wall clock time and date at job start Tue Mar 31 2020 21:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47350 * 2 1 4 4 C 1.34228 * 117.00563 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99356 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00421 * 180.02562 * 4 3 2 7 7 H 1.09007 * 109.47204 * 55.00155 * 6 4 3 8 8 C 1.52995 * 109.47090 * 295.00188 * 6 4 3 9 9 C 1.50707 * 109.47301 * 174.99821 * 8 6 4 10 10 C 1.38238 * 119.99792 * 90.00016 * 9 8 6 11 11 C 1.38235 * 119.99712 * 179.97438 * 10 9 8 12 12 C 1.38234 * 120.00220 * 359.97124 * 11 10 9 13 13 C 1.38233 * 120.00037 * 0.28719 * 12 11 10 14 14 C 1.38234 * 120.00179 * 269.97953 * 9 8 6 15 15 O 1.45202 * 109.47361 * 174.99809 * 6 4 3 16 16 C 1.34221 * 117.00456 * 270.00372 * 15 6 4 17 17 O 1.20829 * 120.00000 * 359.97438 * 16 15 6 18 18 C 1.50696 * 120.00343 * 180.02562 * 16 15 6 19 19 S 1.81006 * 109.47395 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00091 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00043 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00172 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00285 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46925 * 89.99872 * 24 22 20 26 26 H 1.48496 * 109.47297 * 210.00220 * 24 22 20 27 27 H 1.48504 * 109.47042 * 330.00082 * 24 22 20 28 28 H 1.08992 * 109.47169 * 299.99824 * 1 2 3 29 29 H 1.08996 * 109.46631 * 60.00446 * 1 2 3 30 30 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47596 * 239.99384 * 2 1 3 32 32 H 1.09010 * 109.46913 * 120.00078 * 2 1 3 33 33 H 1.09005 * 109.47610 * 55.00124 * 8 6 4 34 34 H 1.09000 * 109.47256 * 294.99466 * 8 6 4 35 35 H 1.08005 * 120.00068 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.99770 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.99744 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.00395 * 179.72811 * 13 12 11 39 39 H 1.07999 * 119.99968 * 359.97438 * 14 9 8 40 40 H 1.09001 * 109.47172 * 299.99621 * 18 16 15 41 41 H 1.09002 * 109.47640 * 59.99593 * 18 16 15 42 42 H 0.97000 * 120.00585 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5146 3.4982 0.8431 8 6 3.5528 3.6420 -1.3061 9 6 4.0224 5.0731 -1.2548 10 6 5.2880 5.4017 -1.7035 11 6 5.7185 6.7145 -1.6570 12 6 4.8833 7.6987 -1.1623 13 6 3.6198 7.3693 -0.7086 14 6 3.1875 6.0572 -0.7595 15 8 5.3659 2.8633 0.1210 16 6 5.8757 2.8717 1.3626 17 8 5.1388 2.9391 2.3178 18 6 7.3672 2.7982 1.5654 19 16 7.7376 2.8299 3.3368 20 6 9.4962 2.7340 3.2834 21 1 10.0053 2.6785 2.3326 22 6 10.2271 2.7285 4.4634 23 7 11.5408 2.6574 4.4235 24 14 9.3464 2.8237 6.1080 25 1 9.0374 1.4514 6.5841 26 1 10.2180 3.5065 7.0975 27 1 8.0835 3.5887 5.9497 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.4712 3.6192 -1.4393 34 1 4.0326 3.1319 -2.1413 35 1 5.9403 4.6328 -2.0905 36 1 6.7073 6.9712 -2.0072 37 1 5.2196 8.7244 -1.1264 38 1 2.9689 8.1375 -0.3180 39 1 2.1985 5.8006 -0.4096 40 1 7.7478 1.8739 1.1307 41 1 7.8424 3.6506 1.0799 42 1 12.0516 2.6540 5.2481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919083748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:17 Heat of formation + Delta-G solvation = -170.245110 kcal Electronic energy + Delta-G solvation = -26488.455455 eV Core-core repulsion = 22524.216223 eV Total energy + Delta-G solvation = -3964.239231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.38075 -41.19268 -40.10067 -38.22304 -37.53391 -34.84924 -34.71516 -32.70876 -31.73802 -31.73267 -30.27436 -27.92185 -26.29934 -24.33188 -23.49821 -23.11936 -22.21698 -21.74531 -20.06035 -19.33501 -19.03523 -18.25575 -17.77139 -17.44299 -17.34936 -17.09523 -16.65295 -16.20104 -15.99690 -15.84461 -15.32168 -14.96040 -14.87363 -14.58250 -14.26531 -14.20084 -13.97948 -13.83915 -13.64139 -13.39966 -13.31722 -13.06089 -13.01227 -12.88674 -12.77492 -12.64376 -12.53991 -12.10095 -11.95532 -11.85466 -11.76141 -11.62604 -11.41321 -11.20820 -10.68058 -9.77528 -9.65280 -9.10369 -8.54702 -6.28930 0.35756 0.54089 0.60477 0.82341 0.89054 1.19361 1.29996 1.43550 1.50105 1.78689 2.21468 2.59577 2.83349 2.84835 3.28807 3.49001 3.65442 3.66561 3.92029 3.95621 4.01200 4.02640 4.04329 4.20324 4.29614 4.31670 4.34326 4.42825 4.63805 4.72334 4.75770 4.79523 4.90867 4.97165 5.05302 5.15217 5.21074 5.31277 5.59492 5.67343 5.67634 5.69009 6.09220 6.14832 6.32865 6.50063 6.88917 8.57786 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.003630 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.687419 B = 7711.293363 C =10030.817779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.345 6.345 4 C 0.453 3.547 5 O -0.525 6.525 6 C 0.102 3.898 7 H 0.125 0.875 8 C -0.058 4.058 9 C -0.104 4.104 10 C -0.117 4.117 11 C -0.135 4.135 12 C -0.128 4.128 13 C -0.130 4.130 14 C -0.119 4.119 15 O -0.317 6.317 16 C 0.491 3.509 17 O -0.512 6.512 18 C -0.089 4.089 19 S -0.157 6.157 20 C -0.532 4.532 21 H 0.065 0.935 22 C 0.049 3.951 23 N -0.914 5.914 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.256 1.256 27 H -0.234 1.234 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.320 4.655 -15.176 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.262 6.262 4 C 0.295 3.705 5 O -0.413 6.413 6 C 0.045 3.955 7 H 0.143 0.857 8 C -0.094 4.094 9 C -0.104 4.104 10 C -0.135 4.135 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.148 4.148 14 C -0.137 4.137 15 O -0.234 6.234 16 C 0.334 3.666 17 O -0.399 6.399 18 C -0.237 4.237 19 S 0.069 5.931 20 C -0.680 4.680 21 H 0.083 0.917 22 C -0.157 4.157 23 N -0.551 5.551 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.180 1.180 27 H -0.158 1.158 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.906 4.410 -13.932 28.877 hybrid contribution 1.490 -0.526 -0.193 1.592 sum -23.416 3.883 -14.125 27.621 Atomic orbital electron populations 1.21830 0.89532 1.04590 1.04120 1.23423 0.97597 0.78651 1.02654 1.86468 1.22127 1.34317 1.83283 1.24065 0.81836 0.92476 0.72099 1.90718 1.61338 1.43650 1.45644 1.22457 0.78314 0.90084 1.04676 0.85715 1.20736 1.04598 0.91362 0.92741 1.19717 0.95053 0.94558 1.01031 1.21315 0.95719 0.96955 0.99469 1.21434 1.00515 0.93215 1.00119 1.21509 0.94517 1.00280 0.98241 1.21466 0.96670 0.96980 0.99664 1.21390 1.00560 0.92858 0.98878 1.86666 1.23141 1.83376 1.30205 1.23024 0.91350 0.71197 0.81060 1.90652 1.61331 1.45688 1.42268 1.22927 0.90616 1.08824 1.01346 1.84609 1.07078 1.97327 1.04076 1.22390 0.89807 1.58717 0.97077 0.91651 1.25536 0.95053 0.92703 1.02427 1.70002 1.06382 1.48503 1.30224 0.85904 0.80684 0.80418 0.79607 1.18684 1.17965 1.15786 0.91351 0.90287 0.88131 0.90555 0.92188 0.84527 0.88212 0.85592 0.85015 0.84492 0.83976 0.83749 0.86088 0.85172 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.35 -7.37 10.19 -51.40 -0.52 -7.90 16 4 C 0.45 12.27 7.26 71.23 0.52 12.79 16 5 O -0.52 -18.16 16.26 28.31 0.46 -17.70 16 6 C 0.10 2.51 2.45 29.84 0.07 2.59 16 7 H 0.13 3.14 7.16 -2.38 -0.02 3.12 16 8 C -0.06 -0.96 5.04 29.85 0.15 -0.81 16 9 C -0.10 -1.97 4.97 -19.86 -0.10 -2.07 16 10 C -0.12 -2.44 9.40 22.27 0.21 -2.23 16 11 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 12 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 13 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 14 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 15 O -0.32 -9.81 8.92 -44.98 -0.40 -10.21 16 16 C 0.49 18.46 7.94 71.23 0.57 19.03 16 17 O -0.51 -21.55 15.08 21.96 0.33 -21.22 16 18 C -0.09 -3.58 6.27 71.23 0.45 -3.14 16 19 S -0.16 -7.95 18.55 -56.49 -1.05 -8.99 16 20 C -0.53 -31.00 10.04 67.95 0.68 -30.31 16 21 H 0.07 4.03 8.03 -2.91 -0.02 4.00 16 22 C 0.05 2.85 5.50 84.86 0.47 3.32 16 23 N -0.91 -55.44 13.97 21.65 0.30 -55.14 16 24 Si 0.91 44.35 27.74 68.60 1.90 46.26 16 25 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.23 -11.24 6.74 99.48 0.67 -10.57 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 33 H 0.14 1.48 8.06 -2.38 -0.02 1.46 16 34 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 35 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.12 4.69 8.14 -2.39 -0.02 4.67 16 41 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 42 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -75.06 383.76 7.09 -67.97 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.98 Total: 15.50 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.09 Total: -8.56 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.30 Total: -55.14 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.13 Total: -57.03 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.05 Total: -8.99 kcal Total: -75.06 7.09 -67.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919083748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.274 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds