Wall clock time and date at job start Tue Mar 31 2020 21:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48510 * 109.46711 * 269.99853 * 3 2 1 5 5 H 1.48491 * 109.47185 * 149.99791 * 3 2 1 6 6 H 1.48495 * 109.47234 * 29.99567 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99865 * 174.77699 * 7 2 1 9 9 C 1.50696 * 119.99810 * 354.77212 * 7 2 1 10 10 H 1.09000 * 109.47632 * 334.80242 * 9 7 2 11 11 N 1.46503 * 109.46763 * 94.80250 * 9 7 2 12 12 C 1.34783 * 119.99684 * 204.99872 * 11 9 7 13 13 O 1.21581 * 120.00074 * 5.25122 * 12 11 9 14 14 N 1.34776 * 119.99395 * 185.25621 * 12 11 9 15 15 C 1.46376 * 119.65196 * 6.67904 * 14 12 11 16 16 C 1.53239 * 109.48445 * 114.91535 * 15 14 12 17 17 S 1.81737 * 108.80051 * 57.65780 * 16 15 14 18 18 C 1.81743 * 102.30689 * 305.45908 * 17 16 15 19 19 C 1.46382 * 119.64221 * 186.41595 * 14 12 11 20 20 H 1.08992 * 109.47079 * 125.08063 * 19 14 12 21 21 C 1.53002 * 109.46721 * 5.08411 * 19 14 12 22 22 C 1.52998 * 117.50072 * 255.38636 * 21 19 14 23 23 C 1.53001 * 117.49832 * 186.76120 * 21 19 14 24 24 C 1.53001 * 109.47237 * 214.80163 * 9 7 2 25 25 F 1.39900 * 109.46987 * 54.98591 * 24 9 7 26 26 F 1.39899 * 109.47255 * 174.99145 * 24 9 7 27 27 F 1.39905 * 109.46783 * 294.98994 * 24 9 7 28 28 H 0.96990 * 120.00114 * 184.95291 * 1 2 3 29 29 H 0.96997 * 119.99944 * 24.99790 * 11 9 7 30 30 H 1.09000 * 109.47080 * 234.91936 * 15 14 12 31 31 H 1.08994 * 109.46758 * 354.91699 * 15 14 12 32 32 H 1.09004 * 109.57987 * 177.45320 * 16 15 14 33 33 H 1.09001 * 109.58686 * 297.72176 * 16 15 14 34 34 H 1.08998 * 109.58309 * 174.33233 * 18 17 16 35 35 H 1.08997 * 109.58183 * 294.60884 * 18 17 16 36 36 H 1.08994 * 115.54763 * 41.10118 * 21 19 14 37 37 H 1.09001 * 117.50043 * 0.02562 * 22 21 19 38 38 H 1.09005 * 117.49624 * 145.02702 * 22 21 19 39 39 H 1.08992 * 117.50113 * 214.98248 * 23 21 19 40 40 H 1.09001 * 117.49904 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 3.5467 1.4402 0.7000 6 1 1.4467 2.6527 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1960 -0.0846 9 6 1.2558 -2.4963 0.1200 10 1 0.3061 -2.3243 0.6267 11 7 1.0045 -3.0395 -1.2172 12 6 -0.0326 -3.8760 -1.4207 13 8 -0.8152 -4.1047 -0.5189 14 7 -0.2019 -4.4589 -2.6241 15 6 0.8215 -4.2962 -3.6579 16 6 1.4587 -5.6556 -3.9647 17 16 0.1547 -6.8096 -4.4851 18 6 -1.0213 -6.7143 -3.1027 19 6 -1.4047 -5.2526 -2.8813 20 1 -1.9073 -4.8728 -3.7706 21 6 -2.3478 -5.1529 -1.6806 22 6 -2.4303 -6.3605 -0.7449 23 6 -3.5939 -6.0406 -1.6855 24 6 2.0909 -3.4927 0.9266 25 9 2.4276 -2.9272 2.1612 26 9 1.3500 -4.6610 1.1352 27 9 3.2589 -3.8010 0.2209 28 1 -0.4850 -0.8368 0.0725 29 1 1.5844 -2.7972 -1.9559 30 1 0.3634 -3.8972 -4.5630 31 1 1.5884 -3.6070 -3.3046 32 1 2.1891 -5.5442 -4.7661 33 1 1.9523 -6.0378 -3.0712 34 1 -1.9124 -7.2951 -3.3405 35 1 -0.5568 -7.1110 -2.2000 36 1 -2.4371 -4.1627 -1.2341 37 1 -1.8124 -7.2259 -0.9843 38 1 -2.5739 -6.1648 0.3178 39 1 -4.5028 -5.6346 -1.2417 40 1 -3.7416 -6.6960 -2.5439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:07 Heat of formation + Delta-G solvation = -130.805396 kcal Electronic energy + Delta-G solvation = -29695.605920 eV Core-core repulsion = 25223.512934 eV Total energy + Delta-G solvation = -4472.092986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.06905 -46.60186 -46.55307 -40.41108 -37.56637 -35.82274 -34.93149 -32.52591 -31.16920 -29.97195 -28.09696 -24.75565 -24.62914 -23.42626 -22.18410 -21.91492 -20.45351 -19.44193 -18.23408 -17.66813 -17.44495 -17.12148 -16.50442 -16.45702 -15.69954 -15.29787 -15.11455 -14.42228 -14.27905 -14.04051 -13.89761 -13.64024 -13.47614 -13.39378 -13.32916 -13.05379 -12.92467 -12.79291 -12.77694 -12.65069 -12.41731 -11.99818 -11.71890 -11.59967 -11.16161 -11.05223 -10.99109 -10.64339 -10.42870 -10.29348 -9.97862 -9.92006 -9.24051 -8.95507 -8.70237 -8.57757 -8.16579 -7.73232 -6.88152 -4.73329 1.61800 2.36210 2.86417 3.22850 3.29461 3.44634 3.57378 3.92267 4.13264 4.18171 4.21997 4.62852 4.77734 4.90939 4.92272 4.96542 5.02650 5.09677 5.22200 5.22623 5.28734 5.33141 5.37147 5.42476 5.57619 5.70711 5.77069 5.83972 5.94648 6.18224 6.40494 6.41525 6.55073 6.86667 7.06885 7.27273 7.40770 7.91773 8.30182 8.55408 9.06665 9.14381 10.50630 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.004500 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.304307 B = 6220.375160 C = 6292.876231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.043 3.957 3 Si 1.079 2.921 4 H -0.283 1.283 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.611 4.611 8 H 0.070 0.930 9 C 0.232 3.768 10 H 0.095 0.905 11 N -0.725 5.725 12 C 0.693 3.307 13 O -0.567 6.567 14 N -0.635 5.635 15 C 0.113 3.887 16 C -0.099 4.099 17 S -0.268 6.268 18 C -0.097 4.097 19 C 0.197 3.803 20 H 0.085 0.915 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.204 4.204 24 C 0.433 3.567 25 F -0.185 7.185 26 F -0.198 7.198 27 F -0.198 7.198 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -9.022 -7.624 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.169 4.169 3 Si 0.905 3.095 4 H -0.209 1.209 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.649 4.649 8 H 0.088 0.912 9 C 0.128 3.872 10 H 0.113 0.887 11 N -0.382 5.382 12 C 0.396 3.604 13 O -0.445 6.445 14 N -0.374 5.374 15 C -0.013 4.013 16 C -0.248 4.248 17 S -0.040 6.040 18 C -0.247 4.247 19 C 0.091 3.909 20 H 0.103 0.897 21 C -0.138 4.138 22 C -0.201 4.201 23 C -0.242 4.242 24 C 0.377 3.623 25 F -0.166 7.166 26 F -0.179 7.179 27 F -0.180 7.180 28 H 0.092 0.908 29 H 0.227 0.773 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.154 -8.223 -7.935 11.485 hybrid contribution 0.861 -1.337 0.863 1.810 sum -0.293 -9.560 -7.072 11.895 Atomic orbital electron populations 1.70761 1.07001 1.32232 1.40219 1.26148 0.96167 1.03180 0.91404 0.83396 0.74907 0.73967 0.77266 1.20910 1.20713 1.20455 1.21853 0.95451 0.89447 1.58150 0.91165 1.19703 0.97079 0.89057 0.81341 0.88715 1.47104 1.30411 1.47901 1.12770 1.16474 0.82746 0.79101 0.82096 1.90871 1.44465 1.66821 1.42315 1.47242 1.21800 1.54892 1.13418 1.21639 0.91504 0.95543 0.92633 1.23868 0.98458 0.97050 1.05439 1.86703 1.24502 1.60135 1.32661 1.24098 1.00725 1.00929 0.98903 1.20412 0.84299 0.88045 0.98104 0.89700 1.22692 0.95320 0.99266 0.96479 1.22855 1.00685 0.99194 0.97319 1.23205 0.93651 1.04923 1.02381 1.22052 0.79456 0.81399 0.79430 1.93088 1.92965 1.85074 1.45499 1.93132 1.76825 1.52591 1.95370 1.93041 1.52129 1.93941 1.78897 0.90814 0.77282 0.89968 0.88747 0.86743 0.89421 0.87029 0.88938 0.84121 0.89595 0.89119 0.89133 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.52 13.63 55.43 0.76 -22.77 16 2 C 0.04 1.07 5.45 -17.82 -0.10 0.97 16 3 Si 1.08 22.27 29.91 -169.99 -5.08 17.19 16 4 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.61 -14.96 7.97 -34.44 -0.27 -15.24 16 8 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16 9 C 0.23 5.39 1.94 -69.08 -0.13 5.26 16 10 H 0.10 2.48 5.77 -51.93 -0.30 2.18 16 11 N -0.73 -14.65 4.78 -59.81 -0.29 -14.93 16 12 C 0.69 13.48 7.66 -86.91 -0.67 12.82 16 13 O -0.57 -12.34 10.47 5.29 0.06 -12.28 16 14 N -0.63 -9.81 2.80 -172.01 -0.48 -10.30 16 15 C 0.11 1.40 6.22 -3.99 -0.02 1.38 16 16 C -0.10 -1.12 6.66 37.28 0.25 -0.87 16 17 S -0.27 -3.24 22.29 -107.50 -2.40 -5.64 16 18 C -0.10 -1.21 4.68 37.02 0.17 -1.03 16 19 C 0.20 2.75 3.13 -68.13 -0.21 2.54 16 20 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.12 -1.81 3.81 -90.62 -0.34 -2.15 16 22 C -0.16 -2.39 9.08 -26.73 -0.24 -2.63 16 23 C -0.20 -2.56 9.89 -26.73 -0.26 -2.82 16 24 C 0.43 9.76 2.83 37.16 0.11 9.86 16 25 F -0.18 -4.27 16.89 2.25 0.04 -4.23 16 26 F -0.20 -4.48 16.05 2.25 0.04 -4.44 16 27 F -0.20 -4.25 16.93 2.25 0.04 -4.22 16 28 H 0.28 7.74 6.55 -40.82 -0.27 7.47 16 29 H 0.39 7.17 6.02 -40.82 -0.25 6.93 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.17 5.46 -51.93 -0.28 0.89 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 1.21 6.98 -51.93 -0.36 0.84 16 35 H 0.09 1.28 6.48 -51.93 -0.34 0.94 16 36 H 0.14 2.67 5.98 -52.24 -0.31 2.35 16 37 H 0.09 1.18 5.82 -51.93 -0.30 0.88 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.90 7.19 -51.93 -0.37 0.53 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -27.25 337.26 -8.50 -35.75 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.52 Total: 12.72 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.73 Total: 8.08 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.01 Total: -47.99 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.06 Total: -12.28 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 0.11 Total: -12.89 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.08 Total: 17.19 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.40 Total: -5.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.25 -8.50 -35.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.059 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds