Wall clock time and date at job start Tue Mar 31 2020 21:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48510 * 109.46711 * 269.99853 * 3 2 1 5 5 H 1.48491 * 109.47185 * 149.99791 * 3 2 1 6 6 H 1.48495 * 109.47234 * 29.99567 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99865 * 174.77699 * 7 2 1 9 9 C 1.50696 * 119.99810 * 354.77212 * 7 2 1 10 10 H 1.09000 * 109.47632 * 334.80242 * 9 7 2 11 11 N 1.46503 * 109.46763 * 94.80250 * 9 7 2 12 12 C 1.34783 * 119.99684 * 204.99872 * 11 9 7 13 13 O 1.21581 * 120.00074 * 5.25122 * 12 11 9 14 14 N 1.34776 * 119.99395 * 185.25621 * 12 11 9 15 15 C 1.46376 * 119.65196 * 6.67904 * 14 12 11 16 16 C 1.53239 * 109.48445 * 114.91535 * 15 14 12 17 17 S 1.81737 * 108.80051 * 57.65780 * 16 15 14 18 18 C 1.81743 * 102.30689 * 305.45908 * 17 16 15 19 19 C 1.46382 * 119.64221 * 186.41595 * 14 12 11 20 20 H 1.08992 * 109.47079 * 125.08063 * 19 14 12 21 21 C 1.53002 * 109.46721 * 5.08411 * 19 14 12 22 22 C 1.52998 * 117.50072 * 255.38636 * 21 19 14 23 23 C 1.53001 * 117.49832 * 186.76120 * 21 19 14 24 24 C 1.53001 * 109.47237 * 214.80163 * 9 7 2 25 25 F 1.39900 * 109.46987 * 54.98591 * 24 9 7 26 26 F 1.39899 * 109.47255 * 174.99145 * 24 9 7 27 27 F 1.39905 * 109.46783 * 294.98994 * 24 9 7 28 28 H 0.96990 * 120.00114 * 184.95291 * 1 2 3 29 29 H 0.96997 * 119.99944 * 24.99790 * 11 9 7 30 30 H 1.09000 * 109.47080 * 234.91936 * 15 14 12 31 31 H 1.08994 * 109.46758 * 354.91699 * 15 14 12 32 32 H 1.09004 * 109.57987 * 177.45320 * 16 15 14 33 33 H 1.09001 * 109.58686 * 297.72176 * 16 15 14 34 34 H 1.08998 * 109.58309 * 174.33233 * 18 17 16 35 35 H 1.08997 * 109.58183 * 294.60884 * 18 17 16 36 36 H 1.08994 * 115.54763 * 41.10118 * 21 19 14 37 37 H 1.09001 * 117.50043 * 0.02562 * 22 21 19 38 38 H 1.09005 * 117.49624 * 145.02702 * 22 21 19 39 39 H 1.08992 * 117.50113 * 214.98248 * 23 21 19 40 40 H 1.09001 * 117.49904 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 3.5467 1.4402 0.7000 6 1 1.4467 2.6527 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1960 -0.0846 9 6 1.2558 -2.4963 0.1200 10 1 0.3061 -2.3243 0.6267 11 7 1.0045 -3.0395 -1.2172 12 6 -0.0326 -3.8760 -1.4207 13 8 -0.8152 -4.1047 -0.5189 14 7 -0.2019 -4.4589 -2.6241 15 6 0.8215 -4.2962 -3.6579 16 6 1.4587 -5.6556 -3.9647 17 16 0.1547 -6.8096 -4.4851 18 6 -1.0213 -6.7143 -3.1027 19 6 -1.4047 -5.2526 -2.8813 20 1 -1.9073 -4.8728 -3.7706 21 6 -2.3478 -5.1529 -1.6806 22 6 -2.4303 -6.3605 -0.7449 23 6 -3.5939 -6.0406 -1.6855 24 6 2.0909 -3.4927 0.9266 25 9 2.4276 -2.9272 2.1612 26 9 1.3500 -4.6610 1.1352 27 9 3.2589 -3.8010 0.2209 28 1 -0.4850 -0.8368 0.0725 29 1 1.5844 -2.7972 -1.9559 30 1 0.3634 -3.8972 -4.5630 31 1 1.5884 -3.6070 -3.3046 32 1 2.1891 -5.5442 -4.7661 33 1 1.9523 -6.0378 -3.0712 34 1 -1.9124 -7.2951 -3.3405 35 1 -0.5568 -7.1110 -2.2000 36 1 -2.4371 -4.1627 -1.2341 37 1 -1.8124 -7.2259 -0.9843 38 1 -2.5739 -6.1648 0.3178 39 1 -4.5028 -5.6346 -1.2417 40 1 -3.7416 -6.6960 -2.5439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:06 Heat of formation + Delta-G solvation = -145.204438 kcal Electronic energy + Delta-G solvation = -29696.230309 eV Core-core repulsion = 25223.512934 eV Total energy + Delta-G solvation = -4472.717375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.92355 -48.43985 -48.41817 -41.78965 -38.91401 -37.07958 -36.67998 -34.28875 -32.24797 -31.30942 -29.70003 -26.56128 -25.90270 -24.62018 -23.69468 -23.20869 -21.80700 -20.96233 -19.88350 -19.40465 -18.99282 -18.95702 -18.14120 -17.67239 -17.08577 -16.47745 -16.30455 -15.89995 -15.65206 -15.46425 -15.36054 -15.27642 -15.15905 -14.91688 -14.88650 -14.64274 -14.60494 -14.58748 -14.39539 -14.22788 -13.52165 -13.40585 -13.05926 -12.81133 -12.63322 -12.46686 -12.27109 -12.13278 -11.90759 -11.67109 -11.17222 -11.11500 -10.92742 -10.81582 -10.16248 -9.88713 -9.70978 -8.88053 -8.72015 -6.73542 0.66438 1.38985 1.48625 1.57944 1.68696 1.84306 1.91789 2.22942 2.46541 2.67455 3.04155 3.06245 3.35098 3.40607 3.51340 3.62699 3.77288 3.86550 3.95580 3.99531 4.12290 4.16870 4.18273 4.38587 4.50787 4.55461 4.65078 4.74378 4.79086 4.87712 5.05681 5.24537 5.28267 5.34524 5.57103 5.64595 5.84285 5.94210 6.26365 7.02475 7.14173 7.61712 8.49637 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.004500 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.304307 B = 6220.375160 C = 6292.876231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 1.123 2.877 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.241 3.759 10 H 0.060 0.940 11 N -0.724 5.724 12 C 0.688 3.312 13 O -0.595 6.595 14 N -0.630 5.630 15 C 0.107 3.893 16 C -0.094 4.094 17 S -0.260 6.260 18 C -0.091 4.091 19 C 0.198 3.802 20 H 0.100 0.900 21 C -0.136 4.136 22 C -0.173 4.173 23 C -0.170 4.170 24 C 0.436 3.564 25 F -0.189 7.189 26 F -0.199 7.199 27 F -0.188 7.188 28 H 0.262 0.738 29 H 0.399 0.601 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -9.789 -9.851 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.943 3.057 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.211 1.211 7 C -0.653 4.653 8 H 0.091 0.909 9 C 0.135 3.865 10 H 0.078 0.922 11 N -0.381 5.381 12 C 0.390 3.610 13 O -0.475 6.475 14 N -0.368 5.368 15 C -0.017 4.017 16 C -0.243 4.243 17 S -0.032 6.032 18 C -0.240 4.240 19 C 0.092 3.908 20 H 0.118 0.882 21 C -0.156 4.156 22 C -0.210 4.210 23 C -0.208 4.208 24 C 0.380 3.620 25 F -0.170 7.170 26 F -0.181 7.181 27 F -0.170 7.170 28 H 0.073 0.927 29 H 0.238 0.762 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.161 0.839 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.426 -9.031 -10.216 13.642 hybrid contribution 0.618 -1.195 1.549 2.052 sum 0.192 -10.227 -8.667 13.406 Atomic orbital electron populations 1.70885 1.08076 1.31145 1.43168 1.27465 0.96033 1.06447 0.90330 0.82850 0.74188 0.70356 0.78291 1.18976 1.19187 1.21100 1.22002 0.95512 0.89931 1.57869 0.90936 1.19340 0.95429 0.89391 0.82294 0.92200 1.46580 1.31207 1.48469 1.11883 1.16560 0.82035 0.79186 0.83206 1.90889 1.45135 1.67563 1.43880 1.47258 1.22883 1.54126 1.12513 1.21882 0.90953 0.96544 0.92339 1.23868 0.98656 0.95850 1.05902 1.86718 1.24300 1.60290 1.31877 1.23991 1.01774 0.99579 0.98639 1.20558 0.83402 0.89031 0.97765 0.88183 1.22427 0.98096 0.97552 0.97512 1.22814 1.02643 0.99291 0.96283 1.23249 0.92366 1.03059 1.02078 1.21923 0.79640 0.81250 0.79228 1.93076 1.92997 1.85158 1.45786 1.93129 1.76971 1.52591 1.95368 1.93052 1.51465 1.93845 1.78639 0.92654 0.76153 0.87925 0.88859 0.83886 0.90770 0.84860 0.90534 0.88373 0.88535 0.91546 0.88807 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.01 13.63 21.45 0.29 -49.71 16 2 C 0.00 0.11 5.45 84.65 0.46 0.57 16 3 Si 1.12 44.28 29.91 68.60 2.05 46.34 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.29 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.62 -30.32 7.97 25.60 0.20 -30.12 16 8 H 0.07 3.50 7.76 -2.91 -0.02 3.47 16 9 C 0.24 11.50 1.94 44.24 0.09 11.59 16 10 H 0.06 3.32 5.77 -2.39 -0.01 3.31 16 11 N -0.72 -29.69 4.78 -461.41 -2.21 -31.90 16 12 C 0.69 27.31 7.66 179.05 1.37 28.68 16 13 O -0.60 -27.16 10.47 -3.97 -0.04 -27.20 16 14 N -0.63 -19.06 2.80 -816.37 -2.28 -21.35 16 15 C 0.11 2.46 6.22 86.48 0.54 3.00 16 16 C -0.09 -1.88 6.66 72.06 0.48 -1.40 16 17 S -0.26 -5.54 22.29 -56.49 -1.26 -6.79 16 18 C -0.09 -2.04 4.68 71.89 0.34 -1.71 16 19 C 0.20 5.24 3.13 44.92 0.14 5.38 16 20 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 21 C -0.14 -4.18 3.81 -10.79 -0.04 -4.23 16 22 C -0.17 -5.07 9.08 30.59 0.28 -4.79 16 23 C -0.17 -4.00 9.89 30.60 0.30 -3.70 16 24 C 0.44 19.87 2.83 71.98 0.20 20.07 16 25 F -0.19 -8.80 16.89 44.97 0.76 -8.04 16 26 F -0.20 -9.20 16.05 44.97 0.72 -8.47 16 27 F -0.19 -7.96 16.93 44.97 0.76 -7.20 16 28 H 0.26 15.27 6.55 -92.72 -0.61 14.67 16 29 H 0.40 14.64 6.02 -92.71 -0.56 14.08 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.17 5.46 -2.39 -0.01 2.15 16 32 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.13 2.42 6.98 -2.39 -0.02 2.40 16 35 H 0.08 2.00 6.48 -2.39 -0.02 1.99 16 36 H 0.10 3.94 5.98 -7.21 -0.04 3.89 16 37 H 0.10 2.59 5.82 -2.39 -0.01 2.57 16 38 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.11 2.03 7.19 -2.39 -0.02 2.01 16 Total: -1.00 -60.60 337.26 3.84 -56.75 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.68 Total: 34.21 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 4.36 Total: 23.36 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -4.20 Total: -102.96 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 9 Polarization: -25.95 SS G_CDS: 2.24 Total: -23.71 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.05 Total: 46.34 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -1.26 Total: -6.79 kcal Total: -60.60 3.84 -56.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.450 kcal (2) G-P(sol) polarization free energy of solvation -60.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds