Wall clock time and date at job start Tue Mar 31 2020 21:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48503 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47081 * 299.99279 * 3 2 1 6 6 H 1.48494 * 109.47589 * 59.99598 * 3 2 1 7 7 C 1.37877 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00093 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47641 * 300.00148 * 9 7 2 11 11 N 1.46497 * 109.47416 * 179.97438 * 9 7 2 12 12 C 1.34775 * 120.00457 * 155.00351 * 11 9 7 13 13 O 1.21588 * 119.99938 * 5.05245 * 12 11 9 14 14 N 1.34776 * 120.00273 * 185.05413 * 12 11 9 15 15 C 1.46377 * 119.64876 * 355.07712 * 14 12 11 16 16 C 1.53241 * 109.48786 * 245.09318 * 15 14 12 17 17 S 1.81743 * 108.79359 * 302.33680 * 16 15 14 18 18 C 1.81742 * 102.30621 * 54.54632 * 17 16 15 19 19 C 1.46375 * 119.64901 * 174.80514 * 14 12 11 20 20 H 1.08999 * 109.47282 * 234.92073 * 19 14 12 21 21 C 1.53011 * 109.46628 * 354.90368 * 19 14 12 22 22 C 1.53000 * 117.49999 * 267.34671 * 21 19 14 23 23 C 1.52997 * 117.49673 * 198.68590 * 21 19 14 24 24 C 1.53008 * 109.46920 * 60.00118 * 9 7 2 25 25 F 1.39893 * 109.47023 * 179.97438 * 24 9 7 26 26 F 1.39900 * 109.46965 * 300.00161 * 24 9 7 27 27 F 1.39897 * 109.46930 * 59.99826 * 24 9 7 28 28 H 0.97001 * 120.00085 * 0.02562 * 1 2 3 29 29 H 0.97010 * 120.00022 * 335.00297 * 11 9 7 30 30 H 1.09001 * 109.46559 * 5.08860 * 15 14 12 31 31 H 1.08996 * 109.47085 * 125.07982 * 15 14 12 32 32 H 1.08996 * 109.58580 * 62.13480 * 16 15 14 33 33 H 1.09002 * 109.58002 * 182.40911 * 16 15 14 34 34 H 1.08998 * 109.58624 * 65.25170 * 18 17 16 35 35 H 1.08996 * 109.58274 * 185.53073 * 18 17 16 36 36 H 1.09001 * 115.54327 * 53.01644 * 21 19 14 37 37 H 1.09006 * 117.49686 * 0.02562 * 22 21 19 38 38 H 1.08999 * 117.49416 * 145.01928 * 22 21 19 39 39 H 1.09005 * 117.49423 * 214.98083 * 23 21 19 40 40 H 1.08996 * 117.50439 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5564 0.8919 11 7 2.2029 -3.6127 0.0015 12 6 1.8372 -4.8121 0.4955 13 8 0.6909 -4.9970 0.8565 14 7 2.7419 -5.8066 0.5893 15 6 4.0902 -5.6119 0.0538 16 6 4.3190 -6.5735 -1.1172 17 16 4.0667 -8.2763 -0.5343 18 6 2.4004 -8.1960 0.1869 19 6 2.3677 -7.0678 1.2311 20 1 3.0720 -7.2906 2.0327 21 6 0.9571 -6.9458 1.8113 22 6 0.8292 -6.5069 3.2714 23 6 0.5430 -7.9589 2.8804 24 6 0.3709 -2.5810 -1.2472 25 9 -0.3282 -3.7928 -1.2465 26 9 -0.5382 -1.5176 -1.2476 27 9 1.1748 -2.5076 -2.3898 28 1 -0.4850 0.8400 -0.0004 29 1 3.0966 -3.4868 -0.3543 30 1 4.1981 -4.5844 -0.2937 31 1 4.8237 -5.8099 0.8353 32 1 3.6109 -6.3520 -1.9157 33 1 5.3370 -6.4598 -1.4897 34 1 1.6721 -7.9916 -0.5978 35 1 2.1638 -9.1457 0.6666 36 1 0.1901 -6.6070 1.1148 37 1 1.7500 -6.3046 3.8186 38 1 -0.0222 -5.8796 3.5355 39 1 -0.4967 -8.2863 2.8876 40 1 1.2751 -8.7125 3.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:11 Heat of formation + Delta-G solvation = -103.326608 kcal Electronic energy + Delta-G solvation = -29599.184816 eV Core-core repulsion = 25128.283400 eV Total energy + Delta-G solvation = -4470.901416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.34990 -46.00107 -45.62041 -40.38228 -37.28127 -35.87464 -34.66691 -32.66186 -31.42127 -30.09585 -28.01001 -24.62936 -24.27748 -23.38659 -22.07254 -21.71448 -20.71375 -19.72757 -18.04010 -16.93479 -16.85540 -16.67250 -16.27665 -16.19613 -15.77034 -15.18167 -14.86851 -14.70175 -14.53759 -14.17302 -13.69331 -13.61505 -13.30396 -13.01526 -12.89279 -12.58620 -12.47574 -12.39863 -12.29084 -12.12992 -11.99688 -11.83094 -11.71544 -11.29617 -11.21749 -11.02541 -10.88115 -10.83516 -10.50308 -10.32991 -10.14812 -9.80835 -9.67326 -8.76815 -8.72073 -8.51159 -8.22692 -7.75784 -6.27725 -4.51783 1.60449 2.34964 2.83069 3.14581 3.22415 3.25460 3.59527 4.05704 4.16440 4.24362 4.55268 4.59186 4.80936 4.88190 4.90065 4.94607 5.02294 5.07503 5.27452 5.40590 5.44096 5.47213 5.60403 5.67709 5.81258 5.82361 5.86070 5.88839 6.16076 6.19055 6.39724 6.50088 6.72317 6.90768 7.19508 7.26849 7.52401 7.59891 8.43370 8.51278 9.08298 9.19250 10.63752 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.004278 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.417010 B = 6544.213063 C = 7007.727170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.084 0.916 11 N -0.726 5.726 12 C 0.703 3.297 13 O -0.560 6.560 14 N -0.635 5.635 15 C 0.112 3.888 16 C -0.101 4.101 17 S -0.267 6.267 18 C -0.089 4.089 19 C 0.200 3.800 20 H 0.079 0.921 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.202 4.202 24 C 0.416 3.584 25 F -0.215 7.215 26 F -0.138 7.138 27 F -0.211 7.211 28 H 0.268 0.732 29 H 0.391 0.609 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -12.082 1.310 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.102 0.898 11 N -0.381 5.381 12 C 0.405 3.595 13 O -0.437 6.437 14 N -0.374 5.374 15 C -0.014 4.014 16 C -0.250 4.250 17 S -0.039 6.039 18 C -0.239 4.239 19 C 0.094 3.906 20 H 0.097 0.903 21 C -0.153 4.153 22 C -0.199 4.199 23 C -0.239 4.239 24 C 0.359 3.641 25 F -0.197 7.197 26 F -0.119 7.119 27 F -0.193 7.193 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.172 0.828 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.635 -12.943 1.465 14.619 hybrid contribution -0.012 1.897 -0.499 1.962 sum 6.623 -11.046 0.965 12.916 Atomic orbital electron populations 1.70410 1.05840 1.27275 1.43637 1.25068 0.95142 1.00082 0.94041 0.86169 0.79779 0.82019 0.77921 1.19435 1.20554 1.20547 1.20893 0.93741 0.88112 1.56178 0.90571 1.19597 0.88174 0.84931 0.91567 0.89829 1.45650 1.17422 1.09832 1.65239 1.16099 0.84419 0.80383 0.78605 1.90821 1.17735 1.79894 1.55224 1.47159 1.11852 1.14754 1.63600 1.21666 0.84758 0.99603 0.95361 1.23889 1.06311 0.93855 1.00994 1.86729 1.23238 1.16621 1.77314 1.24005 0.95390 1.02864 1.01625 1.20706 0.96042 0.81405 0.92437 0.90347 1.23066 0.97561 1.01140 0.93494 1.22758 1.02757 0.96444 0.97912 1.23129 1.01790 0.92768 1.06255 1.23170 0.80921 0.72833 0.87131 1.93073 1.81458 1.48252 1.96955 1.93402 1.68446 1.53852 1.96201 1.92979 1.74508 1.96207 1.55641 0.92154 0.77228 0.88785 0.89918 0.89244 0.86680 0.89179 0.86901 0.82763 0.89897 0.88894 0.89094 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.53 9.50 55.43 0.53 -22.01 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.57 16 3 Si 0.91 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -13.65 8.46 -34.44 -0.29 -13.94 16 8 H 0.08 1.78 7.74 -52.49 -0.41 1.38 16 9 C 0.26 6.31 2.20 -69.08 -0.15 6.15 16 10 H 0.08 2.25 7.65 -51.93 -0.40 1.85 16 11 N -0.73 -14.19 4.89 -59.81 -0.29 -14.48 16 12 C 0.70 13.11 7.76 -86.92 -0.67 12.44 16 13 O -0.56 -11.92 10.03 5.29 0.05 -11.86 16 14 N -0.64 -9.15 2.78 -171.39 -0.48 -9.63 16 15 C 0.11 1.26 6.22 -3.98 -0.02 1.24 16 16 C -0.10 -1.05 6.67 37.28 0.25 -0.81 16 17 S -0.27 -3.04 22.29 -107.50 -2.40 -5.44 16 18 C -0.09 -1.04 5.98 37.55 0.22 -0.81 16 19 C 0.20 2.60 2.82 -67.60 -0.19 2.40 16 20 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 21 C -0.13 -1.93 3.13 -90.62 -0.28 -2.21 16 22 C -0.16 -2.29 9.85 -26.69 -0.26 -2.56 16 23 C -0.20 -2.40 10.25 -26.69 -0.27 -2.68 16 24 C 0.42 10.42 2.81 37.16 0.10 10.52 16 25 F -0.22 -5.36 15.47 2.25 0.03 -5.32 16 26 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 27 F -0.21 -5.12 16.94 2.25 0.04 -5.09 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.39 6.66 5.89 -40.82 -0.24 6.42 16 30 H 0.09 1.04 5.41 -51.93 -0.28 0.75 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.16 2.77 5.71 -53.85 -0.31 2.46 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -28.25 339.12 -9.06 -37.31 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.99 Total: 9.17 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -1.67 Total: 11.33 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.24 Total: -46.12 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.05 Total: -11.86 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 0.10 Total: -14.14 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.40 Total: -5.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.25 -9.06 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.019 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds