Wall clock time and date at job start Tue Mar 31 2020 21:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48503 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47081 * 299.99279 * 3 2 1 6 6 H 1.48494 * 109.47589 * 59.99598 * 3 2 1 7 7 C 1.37877 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00093 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47641 * 300.00148 * 9 7 2 11 11 N 1.46497 * 109.47416 * 179.97438 * 9 7 2 12 12 C 1.34775 * 120.00457 * 155.00351 * 11 9 7 13 13 O 1.21588 * 119.99938 * 5.05245 * 12 11 9 14 14 N 1.34776 * 120.00273 * 185.05413 * 12 11 9 15 15 C 1.46377 * 119.64876 * 355.07712 * 14 12 11 16 16 C 1.53241 * 109.48786 * 245.09318 * 15 14 12 17 17 S 1.81743 * 108.79359 * 302.33680 * 16 15 14 18 18 C 1.81742 * 102.30621 * 54.54632 * 17 16 15 19 19 C 1.46375 * 119.64901 * 174.80514 * 14 12 11 20 20 H 1.08999 * 109.47282 * 234.92073 * 19 14 12 21 21 C 1.53011 * 109.46628 * 354.90368 * 19 14 12 22 22 C 1.53000 * 117.49999 * 267.34671 * 21 19 14 23 23 C 1.52997 * 117.49673 * 198.68590 * 21 19 14 24 24 C 1.53008 * 109.46920 * 60.00118 * 9 7 2 25 25 F 1.39893 * 109.47023 * 179.97438 * 24 9 7 26 26 F 1.39900 * 109.46965 * 300.00161 * 24 9 7 27 27 F 1.39897 * 109.46930 * 59.99826 * 24 9 7 28 28 H 0.97001 * 120.00085 * 0.02562 * 1 2 3 29 29 H 0.97010 * 120.00022 * 335.00297 * 11 9 7 30 30 H 1.09001 * 109.46559 * 5.08860 * 15 14 12 31 31 H 1.08996 * 109.47085 * 125.07982 * 15 14 12 32 32 H 1.08996 * 109.58580 * 62.13480 * 16 15 14 33 33 H 1.09002 * 109.58002 * 182.40911 * 16 15 14 34 34 H 1.08998 * 109.58624 * 65.25170 * 18 17 16 35 35 H 1.08996 * 109.58274 * 185.53073 * 18 17 16 36 36 H 1.09001 * 115.54327 * 53.01644 * 21 19 14 37 37 H 1.09006 * 117.49686 * 0.02562 * 22 21 19 38 38 H 1.08999 * 117.49416 * 145.01928 * 22 21 19 39 39 H 1.09005 * 117.49423 * 214.98083 * 23 21 19 40 40 H 1.08996 * 117.50439 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5564 0.8919 11 7 2.2029 -3.6127 0.0015 12 6 1.8372 -4.8121 0.4955 13 8 0.6909 -4.9970 0.8565 14 7 2.7419 -5.8066 0.5893 15 6 4.0902 -5.6119 0.0538 16 6 4.3190 -6.5735 -1.1172 17 16 4.0667 -8.2763 -0.5343 18 6 2.4004 -8.1960 0.1869 19 6 2.3677 -7.0678 1.2311 20 1 3.0720 -7.2906 2.0327 21 6 0.9571 -6.9458 1.8113 22 6 0.8292 -6.5069 3.2714 23 6 0.5430 -7.9589 2.8804 24 6 0.3709 -2.5810 -1.2472 25 9 -0.3282 -3.7928 -1.2465 26 9 -0.5382 -1.5176 -1.2476 27 9 1.1748 -2.5076 -2.3898 28 1 -0.4850 0.8400 -0.0004 29 1 3.0966 -3.4868 -0.3543 30 1 4.1981 -4.5844 -0.2937 31 1 4.8237 -5.8099 0.8353 32 1 3.6109 -6.3520 -1.9157 33 1 5.3370 -6.4598 -1.4897 34 1 1.6721 -7.9916 -0.5978 35 1 2.1638 -9.1457 0.6666 36 1 0.1901 -6.6070 1.1148 37 1 1.7500 -6.3046 3.8186 38 1 -0.0222 -5.8796 3.5355 39 1 -0.4967 -8.2863 2.8876 40 1 1.2751 -8.7125 3.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:10 Heat of formation + Delta-G solvation = -118.637373 kcal Electronic energy + Delta-G solvation = -29599.848741 eV Core-core repulsion = 25128.283400 eV Total energy + Delta-G solvation = -4471.565341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.38530 -48.01740 -47.70357 -41.69847 -38.56179 -37.05197 -36.35419 -34.42748 -32.45276 -31.34414 -29.63951 -26.58071 -25.34155 -24.55638 -23.39228 -23.08535 -22.01465 -21.23065 -19.50273 -18.83957 -18.70334 -18.52544 -17.78934 -17.26135 -17.22506 -16.73601 -16.34531 -16.02000 -15.58887 -15.33098 -15.01788 -15.00553 -14.79968 -14.66242 -14.43220 -14.39562 -14.29081 -14.10400 -13.99155 -13.79794 -13.61739 -13.17281 -13.00423 -12.70445 -12.66801 -12.63618 -12.32632 -12.18561 -12.06259 -11.56146 -11.51257 -11.17738 -10.82649 -10.68676 -10.09083 -9.86047 -9.69181 -8.68050 -8.20848 -6.51348 0.71819 1.44809 1.45907 1.47020 1.56489 1.62426 2.12099 2.35889 2.57112 2.82851 2.95584 3.09397 3.60320 3.75483 3.82160 3.84509 3.91515 4.04075 4.05897 4.19279 4.19582 4.24680 4.38776 4.47632 4.55827 4.61204 4.80291 4.81713 4.84959 4.93542 5.07690 5.31795 5.36600 5.44534 5.57637 5.64893 5.80749 5.91749 6.54039 7.04041 7.19427 7.68000 8.71828 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.004278 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.417010 B = 6544.213063 C = 7007.727170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.981 3.019 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.275 3.725 10 H 0.046 0.954 11 N -0.723 5.723 12 C 0.697 3.303 13 O -0.592 6.592 14 N -0.628 5.628 15 C 0.107 3.893 16 C -0.096 4.096 17 S -0.263 6.263 18 C -0.084 4.084 19 C 0.201 3.799 20 H 0.098 0.902 21 C -0.146 4.146 22 C -0.177 4.177 23 C -0.168 4.168 24 C 0.412 3.588 25 F -0.218 7.218 26 F -0.153 7.153 27 F -0.206 7.206 28 H 0.268 0.732 29 H 0.404 0.596 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -13.097 1.512 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.596 4.596 8 H 0.109 0.891 9 C 0.167 3.833 10 H 0.063 0.937 11 N -0.380 5.380 12 C 0.399 3.601 13 O -0.471 6.471 14 N -0.366 5.366 15 C -0.018 4.018 16 C -0.246 4.246 17 S -0.035 6.035 18 C -0.234 4.234 19 C 0.096 3.904 20 H 0.115 0.885 21 C -0.165 4.165 22 C -0.214 4.214 23 C -0.206 4.206 24 C 0.356 3.644 25 F -0.200 7.200 26 F -0.134 7.134 27 F -0.188 7.188 28 H 0.077 0.923 29 H 0.243 0.757 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.448 -14.012 1.661 16.981 hybrid contribution -0.902 2.126 -0.574 2.380 sum 8.546 -11.885 1.088 14.679 Atomic orbital electron populations 1.70542 1.07481 1.28007 1.44821 1.25967 0.95845 1.03594 0.93532 0.85141 0.79227 0.77594 0.77541 1.17762 1.20833 1.20427 1.21232 0.94467 0.88316 1.55551 0.89105 1.19117 0.88252 0.86498 0.89401 0.93671 1.45408 1.17273 1.09375 1.65932 1.16307 0.84676 0.80781 0.78355 1.90859 1.19443 1.80566 1.56233 1.47199 1.12308 1.14100 1.62966 1.21931 0.83288 1.00154 0.96403 1.23910 1.07617 0.92999 1.00042 1.86748 1.22341 1.17217 1.77185 1.23926 0.95477 1.03173 1.00810 1.20839 0.95363 0.81004 0.93153 0.88454 1.22762 0.97661 1.03135 0.92980 1.22726 1.02360 0.98249 0.98081 1.23173 1.02799 0.91845 1.02751 1.23386 0.80880 0.72335 0.87802 1.93065 1.81598 1.48291 1.97001 1.93372 1.69079 1.54635 1.96322 1.92974 1.74240 1.96173 1.55390 0.92253 0.75716 0.88513 0.87576 0.90675 0.83826 0.91063 0.84857 0.86708 0.89051 0.91354 0.88699 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.00 9.50 21.45 0.20 -47.80 16 2 C 0.02 0.81 5.20 84.66 0.44 1.25 16 3 Si 0.98 39.85 29.54 68.60 2.03 41.87 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -27.54 8.46 25.60 0.22 -27.33 16 8 H 0.09 4.11 7.74 -2.91 -0.02 4.09 16 9 C 0.28 13.49 2.20 44.25 0.10 13.59 16 10 H 0.05 2.57 7.65 -2.39 -0.02 2.55 16 11 N -0.72 -28.37 4.89 -461.41 -2.25 -30.63 16 12 C 0.70 26.31 7.76 179.06 1.39 27.70 16 13 O -0.59 -26.34 10.03 -3.99 -0.04 -26.38 16 14 N -0.63 -17.44 2.78 -814.40 -2.26 -19.70 16 15 C 0.11 2.15 6.22 86.48 0.54 2.68 16 16 C -0.10 -1.76 6.67 72.06 0.48 -1.28 16 17 S -0.26 -5.27 22.29 -56.49 -1.26 -6.53 16 18 C -0.08 -1.81 5.98 72.24 0.43 -1.37 16 19 C 0.20 4.92 2.82 45.28 0.13 5.04 16 20 H 0.10 2.07 8.08 -2.39 -0.02 2.05 16 21 C -0.15 -4.20 3.13 -10.79 -0.03 -4.23 16 22 C -0.18 -5.03 9.85 30.62 0.30 -4.73 16 23 C -0.17 -3.73 10.25 30.62 0.31 -3.42 16 24 C 0.41 21.17 2.81 71.98 0.20 21.38 16 25 F -0.22 -11.20 15.47 44.97 0.70 -10.50 16 26 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 27 F -0.21 -10.01 16.94 44.97 0.76 -9.25 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.40 13.38 5.89 -92.70 -0.55 12.83 16 30 H 0.10 1.91 5.41 -2.39 -0.01 1.89 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.12 4.34 5.71 -32.83 -0.19 4.15 16 37 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -62.74 339.12 3.33 -59.42 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.37 Total: 28.23 kcal Atomic # 6 Polarization: 24.78 SS G_CDS: 4.51 Total: 29.28 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.31 Total: -98.12 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.04 Total: -26.38 kcal Atomic # 9 Polarization: -29.81 SS G_CDS: 2.04 Total: -27.77 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.26 Total: -6.53 kcal Total: -62.74 3.33 -59.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.221 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds