Wall clock time and date at job start Tue Mar 31 2020 20:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38168 * 120.07945 * 2 1 4 4 F 1.35091 * 119.93875 * 0.02562 * 3 2 1 5 5 C 1.38588 * 120.12259 * 180.28442 * 3 2 1 6 6 C 1.38278 * 120.29666 * 359.74045 * 5 3 2 7 7 C 1.38111 * 120.16008 * 0.02562 * 6 5 3 8 8 Cl 1.73600 * 120.06916 * 179.97438 * 7 6 5 9 9 C 1.39570 * 120.07901 * 179.77480 * 2 1 3 10 10 C 1.47772 * 120.14516 * 359.97438 * 9 2 1 11 11 O 1.21565 * 119.99392 * 269.72282 * 10 9 2 12 12 N 1.34773 * 120.00407 * 89.72296 * 10 9 2 13 13 C 1.46497 * 120.00197 * 180.02562 * 12 10 9 14 14 H 1.09003 * 115.51384 * 350.41219 * 13 12 10 15 15 C 1.53001 * 117.44106 * 205.00079 * 13 12 10 16 16 H 1.09002 * 119.53987 * 4.15796 * 15 13 12 17 17 C 1.54391 * 118.12276 * 159.25371 * 15 13 12 18 18 N 1.51826 * 102.86597 * 88.01620 * 17 15 13 19 19 C 1.36943 * 127.61033 * 140.54207 * 18 17 15 20 20 H 1.07994 * 119.99697 * 179.66525 * 19 18 17 21 21 C 1.38808 * 119.99940 * 359.67089 * 19 18 17 22 22 N 1.31624 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00176 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47302 * 59.99434 * 23 21 19 25 25 H 1.48499 * 109.47436 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47063 * 299.99735 * 23 21 19 27 27 C 1.48144 * 104.55308 * 320.27435 * 18 17 15 28 28 C 1.52992 * 117.40891 * 135.77194 * 13 12 10 29 29 H 1.09007 * 119.54057 * 355.89599 * 28 13 12 30 30 H 1.09004 * 109.46501 * 270.23091 * 1 2 3 31 31 H 1.09002 * 109.47191 * 30.22525 * 1 2 3 32 32 H 1.08994 * 109.47496 * 150.22835 * 1 2 3 33 33 H 1.08005 * 119.84859 * 179.72436 * 5 3 2 34 34 H 1.08002 * 119.92308 * 180.02562 * 6 5 3 35 35 H 0.97005 * 119.99799 * 0.02562 * 12 10 9 36 36 H 1.08992 * 110.40800 * 207.99366 * 17 15 13 37 37 H 1.08999 * 110.40393 * 330.42441 * 17 15 13 38 38 H 0.96995 * 119.99945 * 180.02562 * 22 21 19 39 39 H 1.09002 * 110.40706 * 281.07236 * 27 18 17 40 40 H 1.09001 * 110.41178 * 158.64223 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1956 0.0000 4 9 1.5244 2.3657 0.0005 5 6 3.5854 1.1967 -0.0060 6 6 4.2839 0.0033 -0.0065 7 6 3.6038 -1.1988 -0.0017 8 17 4.4831 -2.6956 -0.0031 9 6 2.2065 -1.2077 0.0047 10 6 1.4727 -2.4904 0.0104 11 8 1.1757 -3.0160 1.0655 12 7 1.1326 -3.0774 -1.1542 13 6 0.4046 -4.3486 -1.1486 14 1 0.3178 -4.8356 -0.1773 15 6 0.5468 -5.2480 -2.3781 16 1 1.2262 -4.9587 -3.1799 17 6 0.2202 -6.7490 -2.2235 18 7 -1.2717 -6.8007 -2.5003 19 6 -1.9589 -7.7548 -3.2023 20 1 -3.0292 -7.6719 -3.3204 21 6 -1.2799 -8.8283 -3.7619 22 7 0.0246 -8.9290 -3.6183 23 14 -2.2174 -10.1301 -4.7189 24 1 -2.9029 -9.4975 -5.8743 25 1 -1.2693 -11.1624 -5.2096 26 1 -3.2254 -10.7658 -3.8328 27 6 -1.8156 -5.5933 -1.8361 28 6 -0.7717 -4.4908 -2.1164 29 1 -1.0746 -3.6375 -2.7232 30 1 -0.3632 0.0041 1.0277 31 1 -0.3634 0.8880 -0.5173 32 1 -0.3634 -0.8919 -0.5102 33 1 4.1222 2.1338 -0.0104 34 1 5.3638 0.0111 -0.0107 35 1 1.3700 -2.6581 -1.9961 36 1 0.7936 -7.3384 -2.9389 37 1 0.4261 -7.0798 -1.2056 38 1 0.4991 -9.6789 -4.0097 39 1 -1.9127 -5.7609 -0.7634 40 1 -2.7791 -5.3232 -2.2682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960647074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:06 Heat of formation + Delta-G solvation = -13.987373 kcal Electronic energy + Delta-G solvation = -26146.641004 eV Core-core repulsion = 22095.966356 eV Total energy + Delta-G solvation = -4050.674648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.06257 -41.62998 -40.30825 -39.20468 -37.65420 -36.03975 -34.51047 -33.97639 -32.28611 -31.48108 -28.83641 -28.43751 -27.63924 -25.45788 -23.45611 -22.99653 -22.00982 -21.73132 -20.81397 -19.28230 -18.89214 -18.22088 -17.82536 -17.41789 -17.36189 -16.84035 -16.69348 -15.76679 -15.70019 -15.35486 -14.95148 -14.72321 -14.62821 -14.58004 -14.45593 -14.01080 -13.96023 -13.80078 -13.25426 -13.13010 -13.06234 -13.00537 -12.71495 -12.69475 -12.26914 -12.15993 -12.13519 -12.00839 -11.75475 -11.66372 -11.29355 -10.95065 -10.69306 -10.21486 -9.81297 -9.71755 -8.96497 -7.75500 -5.22931 -0.40196 -0.19327 0.87993 1.22187 1.48536 1.51597 1.57991 1.75428 2.14053 2.49876 2.81521 3.01437 3.29117 3.35075 3.43566 3.54942 3.65221 3.82337 3.88506 3.91751 4.12531 4.20415 4.28438 4.36365 4.52154 4.54139 4.55806 4.73937 4.83496 4.87708 4.88356 4.91785 4.98517 5.00454 5.26761 5.34093 5.45731 5.47490 5.50347 5.77647 6.25471 6.29626 6.95262 7.02420 7.69735 8.44380 9.25800 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.002555 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.734401 B =10956.906168 C =11812.112868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C 0.097 3.903 4 F -0.129 7.129 5 C -0.103 4.103 6 C -0.078 4.078 7 C -0.025 4.025 8 Cl -0.056 7.056 9 C -0.108 4.108 10 C 0.574 3.426 11 O -0.560 6.560 12 N -0.671 5.671 13 C 0.115 3.885 14 H 0.110 0.890 15 C -0.172 4.172 16 H 0.119 0.881 17 C 0.154 3.846 18 N -0.624 5.624 19 C -0.232 4.232 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.984 3.016 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.281 1.281 27 C 0.154 3.846 28 C -0.165 4.165 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.416 0.584 36 H 0.108 0.892 37 H -0.003 1.003 38 H 0.249 0.751 39 H 0.023 0.977 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 25.331 5.147 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C 0.077 3.923 4 F -0.107 7.107 5 C -0.122 4.122 6 C -0.096 4.096 7 C -0.053 4.053 8 Cl -0.027 7.027 9 C -0.112 4.112 10 C 0.360 3.640 11 O -0.438 6.438 12 N -0.320 5.320 13 C 0.009 3.991 14 H 0.127 0.873 15 C -0.193 4.193 16 H 0.137 0.863 17 C 0.030 3.970 18 N -0.349 5.349 19 C -0.361 4.361 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.812 3.188 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.207 1.207 27 C 0.028 3.972 28 C -0.187 4.187 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.203 0.797 34 H 0.198 0.802 35 H 0.253 0.747 36 H 0.126 0.874 37 H 0.015 0.985 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.323 24.627 5.754 26.954 hybrid contribution -0.382 -0.952 -0.678 1.229 sum 8.940 23.676 5.076 25.812 Atomic orbital electron populations 1.20889 0.88640 1.04513 1.03980 1.19920 0.97845 0.90124 1.00039 1.17461 0.90720 0.80365 1.03721 1.91529 1.80429 1.45039 1.93752 1.21619 0.91193 1.00885 0.98507 1.21199 1.02508 0.88116 0.97808 1.21155 0.90368 0.89439 1.04343 1.98438 1.75280 1.32368 1.96620 1.19339 0.92369 0.92737 1.06760 1.18206 0.77999 0.84061 0.83719 1.90823 1.55388 1.65320 1.32240 1.45194 1.56085 1.21949 1.08771 1.21489 0.96297 0.85687 0.95648 0.87253 1.24306 1.00869 0.94721 0.99422 0.86299 1.22292 0.85233 0.91469 0.98004 1.46411 1.03694 1.24066 1.60750 1.19458 0.91802 1.00309 1.24491 0.89742 1.25600 0.96811 1.00971 1.02737 1.69735 1.07399 1.32076 1.50669 0.85068 0.77046 0.78248 0.78443 1.20157 1.21985 1.20689 1.21209 0.95367 0.85547 0.95086 1.24316 0.90551 1.00358 1.03437 0.84874 0.89921 0.88529 0.91224 0.79678 0.80238 0.74693 0.87423 0.98524 0.94144 0.95912 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.44 71.24 0.67 -1.49 16 2 C -0.08 -1.43 5.92 -19.56 -0.12 -1.54 16 3 C 0.10 1.41 7.23 22.34 0.16 1.57 16 4 F -0.13 -1.94 16.47 44.97 0.74 -1.19 16 5 C -0.10 -0.99 10.02 22.36 0.22 -0.77 16 6 C -0.08 -0.88 9.81 22.25 0.22 -0.66 16 7 C -0.03 -0.48 6.35 22.60 0.14 -0.33 16 8 Cl -0.06 -1.24 28.04 -2.72 -0.08 -1.31 16 9 C -0.11 -2.36 5.63 -20.07 -0.11 -2.48 16 10 C 0.57 16.21 4.77 86.77 0.41 16.62 16 11 O -0.56 -20.62 16.67 -3.92 -0.07 -20.68 16 12 N -0.67 -17.56 5.56 -445.49 -2.48 -20.03 16 13 C 0.12 3.81 5.97 44.99 0.27 4.08 16 14 H 0.11 4.22 7.40 -2.39 -0.02 4.21 16 15 C -0.17 -6.48 6.96 -9.89 -0.07 -6.54 16 16 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 17 C 0.15 7.65 6.43 85.80 0.55 8.20 16 18 N -0.62 -32.32 3.46 -678.18 -2.35 -34.67 16 19 C -0.23 -12.96 10.42 84.03 0.88 -12.08 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 22 N -0.95 -56.06 10.12 21.65 0.22 -55.84 16 23 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 C 0.15 6.37 7.05 86.53 0.61 6.98 16 28 C -0.17 -5.62 7.06 -9.89 -0.07 -5.69 16 29 H 0.13 3.77 8.14 -2.38 -0.02 3.75 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.10 1.32 7.64 -2.39 -0.02 1.30 16 32 H 0.07 1.34 7.08 -2.39 -0.02 1.32 16 33 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.42 8.54 8.81 -92.70 -0.82 7.72 16 36 H 0.11 6.02 5.34 -2.39 -0.01 6.01 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -70.29 357.13 2.54 -67.74 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.28 Total: 16.13 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 4.24 Total: 2.44 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.60 Total: -110.54 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.07 Total: -20.68 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.74 Total: -1.19 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -70.29 2.54 -67.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960647074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.756 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds