Wall clock time and date at job start Tue Mar 31 2020 20:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47325 * 60.00075 * 3 2 1 6 6 H 1.48498 * 109.47089 * 300.00328 * 3 2 1 7 7 C 1.38808 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00145 * 155.54525 * 7 2 1 9 9 N 1.36935 * 119.99819 * 335.54420 * 7 2 1 10 10 C 1.48147 * 127.83869 * 158.37094 * 9 7 2 11 11 C 1.54795 * 104.41932 * 140.36541 * 10 9 7 12 12 H 1.08994 * 118.33917 * 244.38936 * 11 10 9 13 13 C 1.54294 * 104.91357 * 24.17151 * 11 10 9 14 14 H 1.08996 * 121.81165 * 222.87742 * 13 11 10 15 15 C 1.48149 * 127.83980 * 338.69653 * 9 7 2 16 16 C 1.52999 * 61.49942 * 114.01597 * 13 11 10 17 17 H 1.09009 * 117.44185 * 251.43445 * 16 13 11 18 18 N 1.46502 * 117.44570 * 106.72964 * 16 13 11 19 19 C 1.34776 * 119.99950 * 154.99702 * 18 16 13 20 20 O 1.21285 * 120.00012 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00189 * 180.02562 * 19 18 16 22 22 C 1.50693 * 109.47375 * 179.97438 * 21 19 18 23 23 C 1.38251 * 119.97939 * 100.00038 * 22 21 19 24 24 C 1.38189 * 120.03828 * 179.97438 * 23 22 21 25 25 C 1.38488 * 120.00131 * 0.02562 * 24 23 22 26 26 F 1.35092 * 120.02137 * 179.97438 * 25 24 23 27 27 C 1.38416 * 119.96223 * 0.02562 * 25 24 23 28 28 C 1.38339 * 119.98577 * 279.72560 * 22 21 19 29 29 Cl 1.73600 * 119.99699 * 359.97438 * 28 22 21 30 30 H 0.96991 * 120.00119 * 174.37974 * 1 2 3 31 31 H 1.08996 * 110.41323 * 259.20313 * 10 9 7 32 32 H 1.09007 * 110.40590 * 21.63556 * 10 9 7 33 33 H 1.08999 * 110.40501 * 338.36317 * 15 9 7 34 34 H 1.09000 * 110.40823 * 100.68521 * 15 9 7 35 35 H 0.96988 * 120.00100 * 335.00221 * 18 16 13 36 36 H 1.09004 * 109.46946 * 300.00359 * 21 19 18 37 37 H 1.09000 * 109.46643 * 60.00219 * 21 19 18 38 38 H 1.07994 * 119.98303 * 359.97438 * 23 22 21 39 39 H 1.07999 * 119.99816 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.02055 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0176 -1.2439 -0.3877 9 7 1.4178 -2.3350 0.4899 10 6 1.7695 -3.7441 0.1974 11 6 1.6258 -4.4677 1.5583 12 1 2.5186 -4.8968 2.0129 13 6 0.6377 -3.6010 2.3665 14 1 0.8021 -3.3727 3.4195 15 6 0.2753 -2.4297 1.4283 16 6 0.2071 -5.0114 1.9588 17 1 -0.5534 -5.0999 1.1829 18 7 0.1593 -6.0326 3.0081 19 6 -0.6505 -7.1013 2.8720 20 8 -1.3393 -7.2178 1.8805 21 6 -0.7003 -8.1515 3.9517 22 6 -1.6760 -9.2305 3.5584 23 6 -1.2138 -10.4172 3.0205 24 6 -2.1075 -11.4077 2.6600 25 6 -3.4669 -11.2116 2.8369 26 9 -4.3409 -12.1794 2.4842 27 6 -3.9298 -10.0231 3.3745 28 6 -3.0333 -9.0353 3.7412 29 17 -3.6121 -7.5478 4.4240 30 1 -0.4850 -0.8359 -0.0823 31 1 1.0793 -4.1643 -0.5340 32 1 2.7957 -3.8125 -0.1639 33 1 0.1726 -1.5053 1.9966 34 1 -0.6452 -2.6458 0.8858 35 1 0.7103 -5.9396 3.8009 36 1 0.2907 -8.5867 4.0810 37 1 -1.0217 -7.6951 4.8878 38 1 -0.1538 -10.5703 2.8820 39 1 -1.7457 -12.3346 2.2402 40 1 -4.9897 -9.8694 3.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961669356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:46 Heat of formation + Delta-G solvation = -4.001017 kcal Electronic energy + Delta-G solvation = -25581.337063 eV Core-core repulsion = 21531.095457 eV Total energy + Delta-G solvation = -4050.241607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.31122 -40.36467 -39.29138 -38.22585 -36.78693 -34.65609 -33.22027 -32.62815 -31.37712 -30.18127 -27.79815 -27.34312 -25.33600 -23.59318 -22.84316 -21.66915 -20.63023 -20.18001 -19.40114 -18.23820 -17.47301 -17.24905 -17.10956 -16.70738 -16.00383 -15.78220 -15.17365 -15.01554 -14.43365 -14.22065 -14.03665 -13.91548 -13.80822 -13.58954 -13.18400 -13.13348 -12.56777 -12.43422 -12.34086 -11.84905 -11.70854 -11.67784 -11.53345 -11.26013 -10.80814 -10.69348 -10.57806 -10.27968 -10.09505 -10.01617 -9.68486 -9.39131 -9.29609 -8.96588 -8.59447 -8.38199 -7.02036 -6.15600 -3.22036 0.55231 0.65703 1.70410 2.50816 2.81462 3.20179 3.48827 3.52561 3.65348 3.79956 4.07897 4.12594 4.24557 4.45252 4.53770 4.65602 4.66768 4.92315 4.93301 5.02964 5.16322 5.22277 5.28737 5.39748 5.45595 5.47689 5.64349 5.68852 5.76988 5.83062 5.89646 6.08152 6.28185 6.35427 6.58375 6.64323 6.73542 6.93551 6.96146 7.44733 7.72342 8.16279 8.42212 8.94638 9.75328 10.38166 11.20238 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.002128 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.294627 B =13156.762492 C =13483.832870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.075 2.925 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.180 4.180 12 H 0.106 0.894 13 C -0.172 4.172 14 H 0.104 0.896 15 C 0.165 3.835 16 C 0.097 3.903 17 H 0.134 0.866 18 N -0.697 5.697 19 C 0.518 3.482 20 O -0.525 6.525 21 C -0.107 4.107 22 C -0.066 4.066 23 C -0.067 4.067 24 C -0.148 4.148 25 C 0.111 3.889 26 F -0.134 7.134 27 C -0.146 4.146 28 C 0.009 3.991 29 Cl -0.048 7.048 30 H 0.270 0.730 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.399 0.601 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -23.579 12.567 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.228 4.228 3 Si 0.904 3.096 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.458 4.458 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.028 3.972 11 C -0.202 4.202 12 H 0.124 0.876 13 C -0.194 4.194 14 H 0.122 0.878 15 C 0.039 3.961 16 C -0.009 4.009 17 H 0.152 0.848 18 N -0.346 5.346 19 C 0.304 3.696 20 O -0.401 6.401 21 C -0.147 4.147 22 C -0.067 4.067 23 C -0.085 4.085 24 C -0.167 4.167 25 C 0.092 3.908 26 F -0.112 7.112 27 C -0.166 4.166 28 C -0.018 4.018 29 Cl -0.019 7.019 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.233 0.767 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.681 -21.766 11.888 25.073 hybrid contribution 0.280 -1.674 0.409 1.746 sum -3.401 -23.441 12.297 26.688 Atomic orbital electron populations 1.70703 1.06561 1.30419 1.48168 1.25899 0.96610 1.01308 0.98993 0.83390 0.74186 0.75236 0.76746 1.21793 1.21611 1.22003 1.19784 0.97234 0.86733 1.42090 0.91653 1.45286 1.37462 1.00242 1.49108 1.21196 0.98653 0.85944 0.91422 1.25125 0.92171 1.02906 0.99955 0.87555 1.24400 1.03771 0.91502 0.99681 0.87837 1.21123 0.90753 0.94312 0.89940 1.22509 0.98231 0.87233 0.92950 0.84831 1.45314 1.44309 1.22411 1.22553 1.20263 0.79616 0.82005 0.87709 1.90751 1.41801 1.76642 1.30859 1.20718 1.00449 0.94177 0.99332 1.19195 0.91829 0.95461 1.00264 1.20843 1.00346 0.91423 0.95885 1.21202 0.91199 1.01445 1.02851 1.17448 0.87269 0.86291 0.99831 1.91527 1.68752 1.61294 1.89653 1.20936 1.01100 0.92289 1.02239 1.20453 0.92761 0.88659 0.99905 1.98405 1.88703 1.32223 1.82593 0.91930 0.95577 0.92780 0.91365 0.95405 0.76687 0.87199 0.87221 0.83916 0.83942 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.91 12.82 55.49 0.71 -27.20 16 2 C -0.03 -0.75 5.12 -17.43 -0.09 -0.84 16 3 Si 1.07 25.37 29.98 -169.99 -5.10 20.28 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.33 -9.36 10.19 -15.06 -0.15 -9.51 16 8 H 0.07 1.84 7.94 -52.49 -0.42 1.42 16 9 N -0.60 -15.23 3.22 -168.61 -0.54 -15.77 16 10 C 0.15 3.26 7.08 -2.19 -0.02 3.25 16 11 C -0.18 -3.08 7.25 -86.76 -0.63 -3.71 16 12 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 13 C -0.17 -3.08 6.91 -89.22 -0.62 -3.70 16 14 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 15 C 0.17 3.83 4.99 -2.41 -0.01 3.82 16 16 C 0.10 1.54 6.19 -65.69 -0.41 1.14 16 17 H 0.13 2.47 7.40 -51.92 -0.38 2.09 16 18 N -0.70 -8.34 5.57 -51.64 -0.29 -8.62 16 19 C 0.52 6.40 7.61 -10.99 -0.08 6.32 16 20 O -0.53 -8.78 15.52 5.55 0.09 -8.69 16 21 C -0.11 -0.86 5.30 -29.04 -0.15 -1.01 16 22 C -0.07 -0.62 4.42 -104.58 -0.46 -1.08 16 23 C -0.07 -0.52 9.67 -39.59 -0.38 -0.90 16 24 C -0.15 -1.17 10.03 -39.51 -0.40 -1.56 16 25 C 0.11 1.04 7.30 -39.42 -0.29 0.75 16 26 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 27 C -0.15 -1.41 9.81 -39.48 -0.39 -1.79 16 28 C 0.01 0.10 6.21 -39.51 -0.25 -0.15 16 29 Cl -0.05 -0.52 27.33 -51.86 -1.42 -1.94 16 30 H 0.27 8.24 6.41 -40.82 -0.26 7.98 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 34 H 0.03 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.40 3.50 8.83 -40.82 -0.36 3.14 16 36 H 0.11 0.54 8.00 -51.93 -0.42 0.12 16 37 H 0.11 0.74 7.34 -51.93 -0.38 0.36 16 38 H 0.14 0.74 8.04 -52.49 -0.42 0.32 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -34.07 358.88 -10.18 -44.25 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.76 Total: 2.54 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -4.32 Total: -8.99 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.12 Total: -51.59 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.10 Total: 20.28 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.42 Total: -1.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.07 -10.18 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961669356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.248 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds