Wall clock time and date at job start Tue Mar 31 2020 20:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47325 * 60.00075 * 3 2 1 6 6 H 1.48498 * 109.47089 * 300.00328 * 3 2 1 7 7 C 1.38808 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00145 * 155.54525 * 7 2 1 9 9 N 1.36935 * 119.99819 * 335.54420 * 7 2 1 10 10 C 1.48147 * 127.83869 * 158.37094 * 9 7 2 11 11 C 1.54795 * 104.41932 * 140.36541 * 10 9 7 12 12 H 1.08994 * 118.33917 * 244.38936 * 11 10 9 13 13 C 1.54294 * 104.91357 * 24.17151 * 11 10 9 14 14 H 1.08996 * 121.81165 * 222.87742 * 13 11 10 15 15 C 1.48149 * 127.83980 * 338.69653 * 9 7 2 16 16 C 1.52999 * 61.49942 * 114.01597 * 13 11 10 17 17 H 1.09009 * 117.44185 * 251.43445 * 16 13 11 18 18 N 1.46502 * 117.44570 * 106.72964 * 16 13 11 19 19 C 1.34776 * 119.99950 * 154.99702 * 18 16 13 20 20 O 1.21285 * 120.00012 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00189 * 180.02562 * 19 18 16 22 22 C 1.50693 * 109.47375 * 179.97438 * 21 19 18 23 23 C 1.38251 * 119.97939 * 100.00038 * 22 21 19 24 24 C 1.38189 * 120.03828 * 179.97438 * 23 22 21 25 25 C 1.38488 * 120.00131 * 0.02562 * 24 23 22 26 26 F 1.35092 * 120.02137 * 179.97438 * 25 24 23 27 27 C 1.38416 * 119.96223 * 0.02562 * 25 24 23 28 28 C 1.38339 * 119.98577 * 279.72560 * 22 21 19 29 29 Cl 1.73600 * 119.99699 * 359.97438 * 28 22 21 30 30 H 0.96991 * 120.00119 * 174.37974 * 1 2 3 31 31 H 1.08996 * 110.41323 * 259.20313 * 10 9 7 32 32 H 1.09007 * 110.40590 * 21.63556 * 10 9 7 33 33 H 1.08999 * 110.40501 * 338.36317 * 15 9 7 34 34 H 1.09000 * 110.40823 * 100.68521 * 15 9 7 35 35 H 0.96988 * 120.00100 * 335.00221 * 18 16 13 36 36 H 1.09004 * 109.46946 * 300.00359 * 21 19 18 37 37 H 1.09000 * 109.46643 * 60.00219 * 21 19 18 38 38 H 1.07994 * 119.98303 * 359.97438 * 23 22 21 39 39 H 1.07999 * 119.99816 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.02055 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0176 -1.2439 -0.3877 9 7 1.4178 -2.3350 0.4899 10 6 1.7695 -3.7441 0.1974 11 6 1.6258 -4.4677 1.5583 12 1 2.5186 -4.8968 2.0129 13 6 0.6377 -3.6010 2.3665 14 1 0.8021 -3.3727 3.4195 15 6 0.2753 -2.4297 1.4283 16 6 0.2071 -5.0114 1.9588 17 1 -0.5534 -5.0999 1.1829 18 7 0.1593 -6.0326 3.0081 19 6 -0.6505 -7.1013 2.8720 20 8 -1.3393 -7.2178 1.8805 21 6 -0.7003 -8.1515 3.9517 22 6 -1.6760 -9.2305 3.5584 23 6 -1.2138 -10.4172 3.0205 24 6 -2.1075 -11.4077 2.6600 25 6 -3.4669 -11.2116 2.8369 26 9 -4.3409 -12.1794 2.4842 27 6 -3.9298 -10.0231 3.3745 28 6 -3.0333 -9.0353 3.7412 29 17 -3.6121 -7.5478 4.4240 30 1 -0.4850 -0.8359 -0.0823 31 1 1.0793 -4.1643 -0.5340 32 1 2.7957 -3.8125 -0.1639 33 1 0.1726 -1.5053 1.9966 34 1 -0.6452 -2.6458 0.8858 35 1 0.7103 -5.9396 3.8009 36 1 0.2907 -8.5867 4.0810 37 1 -1.0217 -7.6951 4.8878 38 1 -0.1538 -10.5703 2.8820 39 1 -1.7457 -12.3346 2.2402 40 1 -4.9897 -9.8694 3.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961669356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:45 Heat of formation + Delta-G solvation = -24.864959 kcal Electronic energy + Delta-G solvation = -25582.241792 eV Core-core repulsion = 21531.095457 eV Total energy + Delta-G solvation = -4051.146335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02571 -41.30760 -40.39962 -39.45616 -37.53510 -36.24552 -34.49976 -33.69942 -32.03428 -31.91098 -29.14121 -28.60118 -27.20512 -24.23275 -24.02277 -22.91017 -21.99817 -21.40001 -20.94144 -19.52931 -18.92918 -18.15672 -17.86149 -17.83094 -16.72478 -16.66119 -16.10322 -16.05892 -15.82668 -15.66249 -15.40240 -15.16894 -14.90233 -14.78236 -14.67000 -14.03380 -13.87957 -13.57357 -13.36317 -13.06641 -13.00382 -12.61688 -12.55154 -12.40899 -12.31279 -12.27751 -12.02646 -11.87673 -11.79494 -11.66649 -11.09402 -10.85602 -10.64083 -10.04552 -9.69464 -9.66328 -9.11757 -8.39998 -5.43093 -0.12427 0.01343 0.97425 1.53866 1.57285 1.65926 1.82177 1.89865 2.42062 2.61527 2.71389 3.13968 3.16671 3.43929 3.49631 3.61386 3.70645 3.75754 3.87100 3.88637 4.01432 4.07167 4.27042 4.30757 4.33777 4.45628 4.62844 4.69769 4.74732 4.85023 4.85492 4.90155 4.97984 5.04125 5.16395 5.20998 5.23817 5.47735 5.61593 5.66251 6.23425 6.52792 6.77993 7.24260 7.61605 8.28936 8.95570 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.002128 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.294627 B =13156.762492 C =13483.832870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.082 4.082 3 Si 1.128 2.872 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.291 1.291 7 C -0.338 4.338 8 H 0.065 0.935 9 N -0.622 5.622 10 C 0.145 3.855 11 C -0.162 4.162 12 H 0.144 0.856 13 C -0.171 4.171 14 H 0.131 0.869 15 C 0.168 3.832 16 C 0.121 3.879 17 H 0.105 0.895 18 N -0.682 5.682 19 C 0.518 3.482 20 O -0.573 6.573 21 C -0.098 4.098 22 C -0.078 4.078 23 C -0.063 4.063 24 C -0.145 4.145 25 C 0.096 3.904 26 F -0.141 7.141 27 C -0.159 4.159 28 C -0.008 4.008 29 Cl -0.062 7.062 30 H 0.253 0.747 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.002 0.998 35 H 0.421 0.579 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.176 0.824 39 H 0.167 0.833 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 -25.419 14.296 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.277 4.277 3 Si 0.951 3.049 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.347 5.347 10 C 0.020 3.980 11 C -0.183 4.183 12 H 0.161 0.839 13 C -0.192 4.192 14 H 0.149 0.851 15 C 0.042 3.958 16 C 0.013 3.987 17 H 0.122 0.878 18 N -0.333 5.333 19 C 0.306 3.694 20 O -0.451 6.451 21 C -0.137 4.137 22 C -0.080 4.080 23 C -0.081 4.081 24 C -0.164 4.164 25 C 0.077 3.923 26 F -0.119 7.119 27 C -0.179 4.179 28 C -0.035 4.035 29 Cl -0.033 7.033 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.258 0.742 36 H 0.172 0.828 37 H 0.144 0.856 38 H 0.194 0.806 39 H 0.185 0.815 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.131 -23.659 13.661 27.343 hybrid contribution -0.556 -1.223 -0.208 1.360 sum -1.687 -24.882 13.452 28.336 Atomic orbital electron populations 1.70836 1.07685 1.29391 1.51216 1.27407 0.96642 1.04973 0.98722 0.82708 0.74203 0.71284 0.76717 1.19295 1.21220 1.21770 1.20092 0.97206 0.87991 1.41311 0.91748 1.45591 1.37735 1.01384 1.50013 1.21336 0.98550 0.84303 0.93799 1.25004 0.93955 1.02339 0.97005 0.83881 1.24138 1.04873 0.90336 0.99839 0.85106 1.20931 0.89452 0.95280 0.90147 1.21974 0.96645 0.87010 0.93053 0.87761 1.45125 1.44725 1.21255 1.22191 1.21056 0.78201 0.82240 0.87933 1.90749 1.43547 1.77643 1.33171 1.20786 1.02589 0.92514 0.97775 1.19486 0.91552 0.96492 1.00434 1.21258 1.01951 0.90464 0.94423 1.21547 0.90439 1.02488 1.01898 1.17671 0.88041 0.86165 1.00464 1.91507 1.69142 1.61466 1.89799 1.21053 1.01463 0.92680 1.02686 1.20645 0.93622 0.88347 1.00903 1.98394 1.88957 1.33046 1.82862 0.93748 0.96829 0.92073 0.94500 0.97991 0.74165 0.82828 0.85621 0.80635 0.81544 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 12.82 21.65 0.28 -59.57 16 2 C -0.08 -4.79 5.12 84.86 0.43 -4.36 16 3 Si 1.13 51.47 29.98 68.60 2.06 53.52 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.34 -19.40 10.19 84.03 0.86 -18.54 16 8 H 0.06 3.63 7.94 -2.91 -0.02 3.61 16 9 N -0.62 -32.40 3.22 -687.35 -2.21 -34.61 16 10 C 0.15 6.12 7.08 86.68 0.61 6.74 16 11 C -0.16 -5.16 7.25 -8.29 -0.06 -5.22 16 12 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 13 C -0.17 -5.90 6.91 -9.88 -0.07 -5.96 16 14 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 15 C 0.17 8.08 4.99 86.53 0.43 8.52 16 16 C 0.12 3.67 6.19 46.44 0.29 3.95 16 17 H 0.10 3.91 7.40 -2.38 -0.02 3.89 16 18 N -0.68 -14.06 5.57 -435.68 -2.43 -16.49 16 19 C 0.52 11.37 7.61 87.66 0.67 12.04 16 20 O -0.57 -18.54 15.52 -3.04 -0.05 -18.59 16 21 C -0.10 -1.19 5.30 29.10 0.15 -1.03 16 22 C -0.08 -1.25 4.42 -19.84 -0.09 -1.34 16 23 C -0.06 -0.76 9.67 22.26 0.22 -0.55 16 24 C -0.15 -1.92 10.03 22.32 0.22 -1.70 16 25 C 0.10 1.70 7.30 22.37 0.16 1.87 16 26 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 27 C -0.16 -3.03 9.81 22.34 0.22 -2.81 16 28 C -0.01 -0.16 6.21 22.32 0.14 -0.02 16 29 Cl -0.06 -1.29 27.33 -2.72 -0.07 -1.37 16 30 H 0.25 16.34 6.41 -92.71 -0.59 15.74 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 2.45 8.14 -2.38 -0.02 2.44 16 33 H 0.04 1.96 7.47 -2.39 -0.02 1.94 16 34 H 0.00 0.12 7.66 -2.39 -0.02 0.10 16 35 H 0.42 5.33 8.83 -92.72 -0.82 4.52 16 36 H 0.15 0.56 8.00 -2.39 -0.02 0.54 16 37 H 0.13 1.20 7.34 -2.39 -0.02 1.18 16 38 H 0.18 0.90 8.04 -2.91 -0.02 0.88 16 39 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -78.60 358.88 2.99 -75.61 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.45 Total: 11.81 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.19 Total: -8.42 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.36 Total: -110.66 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.06 Total: 53.52 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.37 kcal Total: -78.60 2.99 -75.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961669356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.748 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds