Wall clock time and date at job start Tue Mar 31 2020 20:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48499 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47205 * 300.00575 * 3 2 1 6 6 H 1.48501 * 109.46955 * 60.00237 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99926 * 189.10027 * 7 2 1 9 9 N 1.36935 * 119.99904 * 9.09694 * 7 2 1 10 10 C 1.48142 * 127.83817 * 15.57478 * 9 7 2 11 11 C 1.54391 * 104.61768 * 140.41441 * 10 9 7 12 12 H 1.08999 * 117.61794 * 244.78081 * 11 10 9 13 13 C 1.54288 * 104.95987 * 23.86644 * 11 10 9 14 14 H 1.09005 * 121.81546 * 223.07729 * 13 11 10 15 15 C 1.48149 * 127.83485 * 195.57605 * 9 7 2 16 16 C 1.52999 * 59.72193 * 114.13986 * 13 11 10 17 17 H 1.09002 * 117.44452 * 252.35462 * 16 13 11 18 18 N 1.46499 * 117.44366 * 107.65200 * 16 13 11 19 19 C 1.34775 * 120.00267 * 155.00543 * 18 16 13 20 20 O 1.21280 * 119.99886 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00181 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.47454 * 179.97438 * 21 19 18 23 23 C 1.38262 * 119.97813 * 269.72706 * 22 21 19 24 24 C 1.38221 * 120.06080 * 179.76381 * 23 22 21 25 25 C 1.38319 * 120.01414 * 0.51006 * 24 23 22 26 26 Cl 1.73592 * 120.02724 * 179.76779 * 25 24 23 27 27 C 1.38555 * 119.94704 * 359.73936 * 25 24 23 28 28 F 1.35096 * 120.02833 * 180.02562 * 27 25 24 29 29 C 1.38203 * 119.97388 * 89.99735 * 22 21 19 30 30 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.40714 * 259.19650 * 10 9 7 32 32 H 1.08998 * 110.40832 * 21.62742 * 10 9 7 33 33 H 1.08995 * 110.41008 * 338.36635 * 15 9 7 34 34 H 1.08997 * 110.40809 * 100.80135 * 15 9 7 35 35 H 0.97004 * 119.99587 * 334.99103 * 18 16 13 36 36 H 1.09003 * 109.47464 * 299.99525 * 21 19 18 37 37 H 1.09002 * 109.47436 * 59.99394 * 21 19 18 38 38 H 1.07997 * 119.96967 * 359.97438 * 23 22 21 39 39 H 1.08004 * 119.99177 * 180.23033 * 24 23 22 40 40 H 1.07998 * 120.00679 * 0.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3384 -2.3805 -0.1886 10 6 -0.0342 -2.5704 -0.7123 11 6 0.0637 -3.8159 -1.6194 12 1 -0.1155 -3.6797 -2.6859 13 6 1.2860 -4.5967 -1.0932 14 1 2.0173 -5.0420 -1.7678 15 6 1.8196 -3.7545 0.0857 16 6 -0.1184 -5.1924 -0.9766 17 1 -0.5683 -5.2278 0.0156 18 7 -0.4527 -6.3116 -1.8608 19 6 -1.4123 -7.1884 -1.5047 20 8 -1.9989 -7.0511 -0.4521 21 6 -1.7565 -8.3394 -2.4145 22 6 -2.8516 -9.1642 -1.7889 23 6 -2.5310 -10.2236 -0.9603 24 6 -3.5341 -10.9782 -0.3817 25 6 -4.8601 -10.6806 -0.6396 26 17 -6.1201 -11.6319 0.0821 27 6 -5.1819 -9.6223 -1.4739 28 9 -6.4764 -9.3299 -1.7265 29 6 -4.1756 -8.8645 -2.0483 30 1 -0.4850 0.8401 0.0004 31 1 -0.7318 -2.7500 0.1058 32 1 -0.3434 -1.7010 -1.2926 33 1 2.9090 -3.7785 0.1075 34 1 1.4116 -4.1190 1.0284 35 1 0.0166 -6.4215 -2.7026 36 1 -2.0959 -7.9537 -3.3759 37 1 -0.8738 -8.9612 -2.5637 38 1 -1.4959 -10.4596 -0.7624 39 1 -3.2825 -11.8032 0.2683 40 1 -4.4252 -8.0398 -2.6994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961875866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:23 Heat of formation + Delta-G solvation = -1.677133 kcal Electronic energy + Delta-G solvation = -25303.799439 eV Core-core repulsion = 21253.658604 eV Total energy + Delta-G solvation = -4050.140836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.23076 -40.33243 -39.30109 -38.24493 -36.89302 -34.52933 -33.16845 -32.54538 -31.08176 -30.33041 -28.03202 -27.18623 -25.60640 -23.42920 -22.85521 -21.64837 -20.61311 -20.15114 -19.31663 -17.88075 -17.14618 -17.10038 -16.92363 -16.77826 -16.26402 -16.00719 -15.19335 -14.77247 -14.52776 -14.27394 -14.02331 -13.74862 -13.59823 -13.30244 -13.19484 -12.80678 -12.74396 -12.27461 -12.19074 -11.85628 -11.72427 -11.58312 -11.47713 -11.26842 -11.02250 -10.87237 -10.44570 -10.24111 -10.17796 -9.96162 -9.76676 -9.34174 -9.22285 -8.94185 -8.78584 -8.39971 -6.90031 -5.82324 -3.17053 0.54996 0.73728 1.66237 2.51568 2.83846 3.25739 3.36306 3.41985 3.44602 3.70661 4.11791 4.21547 4.27212 4.44133 4.63192 4.68968 4.75311 4.92854 5.03332 5.10298 5.24016 5.32732 5.33763 5.44879 5.53308 5.56034 5.64352 5.78988 5.85257 5.97833 6.08866 6.19732 6.31118 6.46787 6.64164 6.74270 6.84283 7.32992 7.47261 7.51204 7.69131 8.17443 8.17779 9.07982 9.70780 10.47344 11.31961 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.001880 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.220426 B =14889.062908 C =15315.175043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.182 4.182 12 H 0.102 0.898 13 C -0.184 4.184 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.099 3.901 17 H 0.132 0.868 18 N -0.698 5.698 19 C 0.515 3.485 20 O -0.528 6.528 21 C -0.105 4.105 22 C -0.029 4.029 23 C -0.103 4.103 24 C -0.081 4.081 25 C -0.076 4.076 26 Cl -0.054 7.054 27 C 0.112 3.888 28 F -0.127 7.127 29 C -0.127 4.127 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.399 0.601 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -24.595 -7.491 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.203 4.203 12 H 0.120 0.880 13 C -0.205 4.205 14 H 0.122 0.878 15 C 0.028 3.972 16 C -0.006 4.006 17 H 0.149 0.851 18 N -0.346 5.346 19 C 0.300 3.700 20 O -0.403 6.403 21 C -0.145 4.145 22 C -0.030 4.030 23 C -0.121 4.121 24 C -0.099 4.099 25 C -0.103 4.103 26 Cl -0.025 7.025 27 C 0.092 3.908 28 F -0.105 7.105 29 C -0.146 4.146 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.233 0.767 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.474 -24.278 -6.626 25.985 hybrid contribution 0.318 0.809 -0.532 1.019 sum -6.156 -23.469 -7.158 25.297 Atomic orbital electron populations 1.69905 1.05070 1.25390 1.55640 1.24918 0.95657 0.98041 1.01697 0.86037 0.78850 0.83489 0.77302 1.20351 1.21618 1.21645 1.19032 0.90836 0.82266 1.43458 0.90452 1.45198 1.13340 0.99975 1.73145 1.21067 0.86898 0.92532 0.93695 1.24728 1.02154 0.92897 1.00563 0.87974 1.24319 0.90199 1.02647 1.03315 0.87831 1.21125 0.97208 0.85916 0.92921 1.21851 0.98408 0.84856 0.95514 0.85065 1.45379 1.38661 1.27337 1.23268 1.20327 0.79613 0.82921 0.87107 1.90768 1.50983 1.74280 1.24302 1.20727 0.98694 0.95642 0.99443 1.19199 0.92919 0.94685 0.96202 1.21039 0.99857 0.94853 0.96357 1.20930 0.89482 1.00252 0.99256 1.21001 0.91283 0.96592 1.01438 1.98387 1.51465 1.70658 1.81970 1.17318 0.79206 0.95719 0.98592 1.91546 1.33781 1.92630 1.92577 1.20980 0.91382 1.00243 1.02009 0.93533 0.95615 0.89104 0.92951 0.95541 0.76696 0.87261 0.87141 0.84319 0.83838 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.70 10.86 55.49 0.60 -26.10 16 2 C -0.01 -0.16 5.40 -17.44 -0.09 -0.26 16 3 Si 0.91 21.74 29.56 -169.99 -5.03 16.71 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.27 10.35 -15.06 -0.16 -6.43 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 9 N -0.59 -15.01 3.38 -168.86 -0.57 -15.58 16 10 C 0.18 4.39 5.70 -2.41 -0.01 4.38 16 11 C -0.18 -3.32 7.06 -89.22 -0.63 -3.95 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 13 C -0.18 -3.07 7.06 -89.22 -0.63 -3.69 16 14 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 15 C 0.16 3.18 7.04 -2.40 -0.02 3.16 16 16 C 0.10 1.57 5.98 -67.93 -0.41 1.17 16 17 H 0.13 2.43 7.40 -51.93 -0.38 2.04 16 18 N -0.70 -8.04 5.56 -53.81 -0.30 -8.34 16 19 C 0.51 6.08 7.82 -10.99 -0.09 5.99 16 20 O -0.53 -8.79 15.60 5.56 0.09 -8.70 16 21 C -0.11 -0.73 5.83 -29.04 -0.17 -0.90 16 22 C -0.03 -0.26 4.37 -104.63 -0.46 -0.71 16 23 C -0.10 -0.82 9.70 -39.58 -0.38 -1.20 16 24 C -0.08 -0.67 9.83 -39.56 -0.39 -1.05 16 25 C -0.08 -0.76 6.33 -39.43 -0.25 -1.00 16 26 Cl -0.05 -0.52 28.62 -51.86 -1.48 -2.00 16 27 C 0.11 1.20 7.28 -39.39 -0.29 0.92 16 28 F -0.13 -1.48 16.84 2.25 0.04 -1.45 16 29 C -0.13 -1.23 9.68 -39.52 -0.38 -1.61 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.26 8.83 -40.82 -0.36 2.90 16 36 H 0.11 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -33.33 361.11 -10.41 -43.74 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.85 Total: 1.48 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.35 Total: -5.20 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.27 Total: -50.01 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.33 -10.41 -43.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961875866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.063 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds