Wall clock time and date at job start Tue Mar 31 2020 20:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48499 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47205 * 300.00575 * 3 2 1 6 6 H 1.48501 * 109.46955 * 60.00237 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99926 * 189.10027 * 7 2 1 9 9 N 1.36935 * 119.99904 * 9.09694 * 7 2 1 10 10 C 1.48142 * 127.83817 * 15.57478 * 9 7 2 11 11 C 1.54391 * 104.61768 * 140.41441 * 10 9 7 12 12 H 1.08999 * 117.61794 * 244.78081 * 11 10 9 13 13 C 1.54288 * 104.95987 * 23.86644 * 11 10 9 14 14 H 1.09005 * 121.81546 * 223.07729 * 13 11 10 15 15 C 1.48149 * 127.83485 * 195.57605 * 9 7 2 16 16 C 1.52999 * 59.72193 * 114.13986 * 13 11 10 17 17 H 1.09002 * 117.44452 * 252.35462 * 16 13 11 18 18 N 1.46499 * 117.44366 * 107.65200 * 16 13 11 19 19 C 1.34775 * 120.00267 * 155.00543 * 18 16 13 20 20 O 1.21280 * 119.99886 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00181 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.47454 * 179.97438 * 21 19 18 23 23 C 1.38262 * 119.97813 * 269.72706 * 22 21 19 24 24 C 1.38221 * 120.06080 * 179.76381 * 23 22 21 25 25 C 1.38319 * 120.01414 * 0.51006 * 24 23 22 26 26 Cl 1.73592 * 120.02724 * 179.76779 * 25 24 23 27 27 C 1.38555 * 119.94704 * 359.73936 * 25 24 23 28 28 F 1.35096 * 120.02833 * 180.02562 * 27 25 24 29 29 C 1.38203 * 119.97388 * 89.99735 * 22 21 19 30 30 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.40714 * 259.19650 * 10 9 7 32 32 H 1.08998 * 110.40832 * 21.62742 * 10 9 7 33 33 H 1.08995 * 110.41008 * 338.36635 * 15 9 7 34 34 H 1.08997 * 110.40809 * 100.80135 * 15 9 7 35 35 H 0.97004 * 119.99587 * 334.99103 * 18 16 13 36 36 H 1.09003 * 109.47464 * 299.99525 * 21 19 18 37 37 H 1.09002 * 109.47436 * 59.99394 * 21 19 18 38 38 H 1.07997 * 119.96967 * 359.97438 * 23 22 21 39 39 H 1.08004 * 119.99177 * 180.23033 * 24 23 22 40 40 H 1.07998 * 120.00679 * 0.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3384 -2.3805 -0.1886 10 6 -0.0342 -2.5704 -0.7123 11 6 0.0637 -3.8159 -1.6194 12 1 -0.1155 -3.6797 -2.6859 13 6 1.2860 -4.5967 -1.0932 14 1 2.0173 -5.0420 -1.7678 15 6 1.8196 -3.7545 0.0857 16 6 -0.1184 -5.1924 -0.9766 17 1 -0.5683 -5.2278 0.0156 18 7 -0.4527 -6.3116 -1.8608 19 6 -1.4123 -7.1884 -1.5047 20 8 -1.9989 -7.0511 -0.4521 21 6 -1.7565 -8.3394 -2.4145 22 6 -2.8516 -9.1642 -1.7889 23 6 -2.5310 -10.2236 -0.9603 24 6 -3.5341 -10.9782 -0.3817 25 6 -4.8601 -10.6806 -0.6396 26 17 -6.1201 -11.6319 0.0821 27 6 -5.1819 -9.6223 -1.4739 28 9 -6.4764 -9.3299 -1.7265 29 6 -4.1756 -8.8645 -2.0483 30 1 -0.4850 0.8401 0.0004 31 1 -0.7318 -2.7500 0.1058 32 1 -0.3434 -1.7010 -1.2926 33 1 2.9090 -3.7785 0.1075 34 1 1.4116 -4.1190 1.0284 35 1 0.0166 -6.4215 -2.7026 36 1 -2.0959 -7.9537 -3.3759 37 1 -0.8738 -8.9612 -2.5637 38 1 -1.4959 -10.4596 -0.7624 39 1 -3.2825 -11.8032 0.2683 40 1 -4.4252 -8.0398 -2.6994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961875866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:22 Heat of formation + Delta-G solvation = -22.130529 kcal Electronic energy + Delta-G solvation = -25304.686365 eV Core-core repulsion = 21253.658604 eV Total energy + Delta-G solvation = -4051.027761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.04268 -41.28377 -40.36051 -39.42440 -37.62652 -36.05200 -34.38567 -33.64879 -32.08264 -31.71477 -28.95567 -28.80676 -27.42516 -24.16720 -23.92898 -22.90399 -21.92090 -21.35052 -20.84081 -18.88040 -18.63644 -18.02431 -17.81097 -17.63695 -17.35243 -16.82233 -16.73987 -16.04687 -15.69495 -15.25369 -15.10918 -14.87154 -14.70951 -14.63513 -14.40087 -13.97668 -13.74160 -13.40744 -13.35930 -13.16821 -12.88915 -12.75381 -12.70765 -12.49029 -12.39089 -12.09574 -12.00719 -11.97301 -11.87703 -11.63940 -11.02311 -10.82620 -10.68839 -10.00619 -9.67607 -9.65278 -8.93140 -7.92530 -5.29665 -0.13893 0.07421 0.94787 1.46707 1.47262 1.58585 1.60195 1.95931 2.45278 2.51344 2.87342 3.01632 3.28598 3.48558 3.60586 3.64995 3.85144 3.90872 3.97761 4.07223 4.15039 4.15615 4.40437 4.43138 4.51618 4.54802 4.70677 4.80357 4.86567 4.92936 4.95104 5.00507 5.03852 5.30013 5.35266 5.43335 5.46063 5.58404 5.64324 5.67624 6.16050 6.59643 6.99288 7.30829 7.66875 8.44967 9.21518 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.001880 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.220426 B =14889.062908 C =15315.175043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.618 5.618 10 C 0.187 3.813 11 C -0.190 4.190 12 H 0.124 0.876 13 C -0.158 4.158 14 H 0.145 0.855 15 C 0.146 3.854 16 C 0.123 3.877 17 H 0.101 0.899 18 N -0.682 5.682 19 C 0.514 3.486 20 O -0.582 6.582 21 C -0.092 4.092 22 C -0.038 4.038 23 C -0.100 4.100 24 C -0.083 4.083 25 C -0.089 4.089 26 Cl -0.059 7.059 27 C 0.084 3.916 28 F -0.141 7.141 29 C -0.136 4.136 30 H 0.249 0.751 31 H -0.010 1.010 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.017 0.983 35 H 0.422 0.578 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 -26.624 -9.301 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.342 5.342 10 C 0.061 3.939 11 C -0.211 4.211 12 H 0.142 0.858 13 C -0.178 4.178 14 H 0.162 0.838 15 C 0.020 3.980 16 C 0.016 3.984 17 H 0.119 0.881 18 N -0.332 5.332 19 C 0.302 3.698 20 O -0.461 6.461 21 C -0.131 4.131 22 C -0.039 4.039 23 C -0.118 4.118 24 C -0.101 4.101 25 C -0.116 4.116 26 Cl -0.030 7.030 27 C 0.064 3.936 28 F -0.119 7.119 29 C -0.155 4.155 30 H 0.058 0.942 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.260 0.740 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.183 0.817 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.005 -26.363 -8.480 27.981 hybrid contribution -0.451 1.374 0.119 1.451 sum -4.456 -24.989 -8.361 26.724 Atomic orbital electron populations 1.70118 1.06691 1.25684 1.57306 1.25803 0.96492 1.01524 1.02173 0.84963 0.78396 0.78978 0.76670 1.18536 1.21700 1.22128 1.19453 0.91455 0.83447 1.42338 0.89703 1.45522 1.13692 1.01289 1.73723 1.20771 0.85996 0.94024 0.93068 1.24391 1.04659 0.91645 1.00436 0.85834 1.24222 0.90658 1.01449 1.01493 0.83766 1.21301 0.98144 0.84333 0.94212 1.21302 0.97385 0.84971 0.94774 0.88129 1.45165 1.38919 1.25698 1.23443 1.21224 0.78256 0.83429 0.86876 1.90768 1.52695 1.75639 1.26999 1.20799 0.99723 0.93747 0.98815 1.19496 0.92923 0.95137 0.96364 1.21450 1.01115 0.94078 0.95145 1.21259 0.88778 1.00825 0.99275 1.21224 0.92009 0.96668 1.01713 1.98378 1.51923 1.70698 1.82028 1.17636 0.79048 0.96906 0.99999 1.91501 1.34715 1.92861 1.92846 1.21211 0.91864 1.00299 1.02162 0.94172 0.99221 0.92655 0.91502 0.96524 0.73999 0.84256 0.82923 0.81503 0.81747 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 10.86 21.65 0.24 -57.59 16 2 C -0.07 -3.78 5.40 84.86 0.46 -3.33 16 3 Si 0.98 45.32 29.56 68.60 2.03 47.35 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.24 -13.26 10.35 84.03 0.87 -12.39 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.44 16 9 N -0.62 -31.78 3.38 -688.14 -2.33 -34.10 16 10 C 0.19 9.31 5.70 86.54 0.49 9.80 16 11 C -0.19 -6.74 7.06 -9.88 -0.07 -6.81 16 12 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 13 C -0.16 -4.82 7.06 -9.88 -0.07 -4.89 16 14 H 0.14 3.34 8.14 -2.38 -0.02 3.33 16 15 C 0.15 5.85 7.04 86.54 0.61 6.46 16 16 C 0.12 3.69 5.98 44.99 0.27 3.96 16 17 H 0.10 3.75 7.40 -2.39 -0.02 3.74 16 18 N -0.68 -13.13 5.56 -442.54 -2.46 -15.59 16 19 C 0.51 10.50 7.82 87.66 0.69 11.19 16 20 O -0.58 -18.72 15.60 -3.03 -0.05 -18.76 16 21 C -0.09 -0.84 5.83 29.10 0.17 -0.67 16 22 C -0.04 -0.56 4.37 -19.87 -0.09 -0.65 16 23 C -0.10 -1.28 9.70 22.27 0.22 -1.07 16 24 C -0.08 -1.21 9.83 22.28 0.22 -1.00 16 25 C -0.09 -1.73 6.33 22.36 0.14 -1.58 16 26 Cl -0.06 -1.14 28.62 -2.72 -0.08 -1.22 16 27 C 0.08 1.81 7.28 22.39 0.16 1.97 16 28 F -0.14 -3.41 16.84 44.97 0.76 -2.65 16 29 C -0.14 -2.48 9.68 22.31 0.22 -2.26 16 30 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 31 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H 0.05 3.11 6.51 -2.39 -0.02 3.09 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.42 4.57 8.83 -92.71 -0.82 3.75 16 36 H 0.14 0.55 8.09 -2.39 -0.02 0.53 16 37 H 0.15 0.21 8.08 -2.39 -0.02 0.19 16 38 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -78.15 361.11 2.66 -75.49 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.27 Total: 8.34 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.28 Total: -1.27 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.55 Total: -107.28 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.76 Total: -2.65 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -78.15 2.66 -75.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961875866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.357 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds