Wall clock time and date at job start Tue Mar 31 2020 20:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99956 * 2 1 4 4 H 1.48495 * 109.47321 * 240.00180 * 3 2 1 5 5 H 1.48506 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47101 * 119.99708 * 3 2 1 7 7 C 1.38808 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00388 * 189.10176 * 7 2 1 9 9 N 1.36942 * 119.99956 * 9.09605 * 7 2 1 10 10 C 1.48148 * 127.83365 * 15.57713 * 9 7 2 11 11 C 1.54390 * 104.61604 * 140.41565 * 10 9 7 12 12 H 1.09003 * 117.61328 * 242.76747 * 11 10 9 13 13 C 1.54154 * 104.96639 * 23.82689 * 11 10 9 14 14 H 1.09002 * 121.78922 * 222.20278 * 13 11 10 15 15 C 1.48142 * 127.83676 * 195.57470 * 9 7 2 16 16 C 1.52994 * 59.75124 * 114.14241 * 13 11 10 17 17 H 1.09006 * 117.43948 * 252.37552 * 16 13 11 18 18 N 1.46500 * 117.44829 * 107.62921 * 16 13 11 19 19 C 1.34767 * 120.00148 * 135.72023 * 18 16 13 20 20 O 1.21285 * 120.00089 * 0.27711 * 19 18 16 21 21 C 1.50701 * 119.99953 * 180.28306 * 19 18 16 22 22 C 1.50707 * 109.47290 * 180.02562 * 21 19 18 23 23 C 1.38238 * 120.00581 * 99.99680 * 22 21 19 24 24 C 1.38220 * 120.04512 * 179.97438 * 23 22 21 25 25 C 1.38263 * 120.06046 * 359.97438 * 24 23 22 26 26 C 1.38267 * 120.01539 * 359.97438 * 25 24 23 27 27 Cl 1.73602 * 120.02791 * 180.02562 * 26 25 24 28 28 C 1.38402 * 120.00018 * 279.72193 * 22 21 19 29 29 F 1.35097 * 120.03569 * 359.97438 * 28 22 21 30 30 H 0.97004 * 119.99921 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.41029 * 21.62614 * 10 9 7 32 32 H 1.09005 * 110.40541 * 259.19238 * 10 9 7 33 33 H 1.08990 * 110.41192 * 338.36982 * 15 9 7 34 34 H 1.08994 * 110.40548 * 100.68971 * 15 9 7 35 35 H 0.97007 * 119.99629 * 316.00250 * 18 16 13 36 36 H 1.09007 * 109.46927 * 299.99689 * 21 19 18 37 37 H 1.08996 * 109.47759 * 59.99503 * 21 19 18 38 38 H 1.07995 * 119.97866 * 359.97438 * 23 22 21 39 39 H 1.08002 * 119.96852 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.98886 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0800 -1.2081 0.1474 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0342 -2.5704 -0.7124 11 6 0.0638 -3.8159 -1.6194 12 1 -0.1484 -3.6861 -2.6807 13 6 1.2856 -4.5957 -1.0944 14 1 2.0088 -5.0525 -1.7699 15 6 1.8197 -3.7545 0.0857 16 6 -0.1183 -5.1924 -0.9766 17 1 -0.5674 -5.2278 0.0159 18 7 -0.4526 -6.3116 -1.8609 19 6 -1.1012 -7.3867 -1.3713 20 8 -1.4126 -7.4255 -0.1997 21 6 -1.4395 -8.5408 -2.2795 22 6 -2.1582 -9.6059 -1.4920 23 6 -3.5354 -9.7052 -1.5603 24 6 -4.1954 -10.6821 -0.8388 25 6 -3.4794 -11.5618 -0.0481 26 6 -2.1018 -11.4653 0.0213 27 17 -1.2025 -12.5701 1.0135 28 6 -1.4391 -10.4883 -0.7047 29 9 -0.0928 -10.3958 -0.6421 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3433 -1.7010 -1.2926 32 1 -0.7317 -2.7500 0.1058 33 1 2.9091 -3.7785 0.1075 34 1 1.4133 -4.1182 1.0294 35 1 -0.2035 -6.2806 -2.7979 36 1 -2.0821 -8.1909 -3.0875 37 1 -0.5222 -8.9547 -2.6981 38 1 -4.0959 -9.0191 -2.1778 39 1 -5.2713 -10.7584 -0.8928 40 1 -3.9962 -12.3249 0.5148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961885489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:59 Heat of formation + Delta-G solvation = -0.015471 kcal Electronic energy + Delta-G solvation = -25704.767500 eV Core-core repulsion = 21654.698719 eV Total energy + Delta-G solvation = -4050.068780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.19111 -40.19533 -39.28431 -38.24197 -36.85761 -34.49500 -33.30912 -32.56764 -30.77564 -30.32640 -28.12540 -27.15365 -25.58689 -23.22151 -22.94445 -21.65064 -20.56725 -20.11627 -19.30316 -18.03928 -17.21359 -17.09108 -16.90967 -16.64663 -16.03266 -15.85006 -15.04377 -14.86866 -14.73085 -14.21455 -13.81298 -13.65922 -13.60973 -13.29807 -13.21226 -12.81150 -12.75365 -12.23338 -12.11155 -11.81760 -11.76739 -11.51033 -11.50262 -11.24051 -11.00220 -10.82189 -10.40777 -10.23370 -10.18187 -9.95311 -9.74068 -9.26880 -9.14746 -9.00527 -8.74058 -8.35691 -6.87722 -5.80469 -3.14768 0.61965 0.68302 1.68370 2.56528 2.89524 3.26144 3.38921 3.42994 3.44239 3.76435 4.05679 4.27766 4.38108 4.46302 4.61472 4.69521 4.73885 4.88419 5.04296 5.14928 5.26349 5.35981 5.37833 5.48862 5.55432 5.58632 5.73833 5.82315 5.89677 5.89861 6.12899 6.21048 6.30935 6.52101 6.69846 6.77567 6.89422 7.33395 7.50919 7.52724 7.70097 8.19615 8.22172 9.10107 9.72799 10.49840 11.33920 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002059 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.344751 B =13593.406035 C =13992.655472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.179 4.179 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.095 3.905 17 H 0.131 0.869 18 N -0.696 5.696 19 C 0.516 3.484 20 O -0.529 6.529 21 C -0.103 4.103 22 C -0.088 4.088 23 C -0.075 4.075 24 C -0.117 4.117 25 C -0.084 4.084 26 C -0.074 4.074 27 Cl -0.052 7.052 28 C 0.128 3.872 29 F -0.122 7.122 30 H 0.255 0.745 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.399 0.601 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -24.921 -7.465 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.200 4.200 12 H 0.121 0.879 13 C -0.203 4.203 14 H 0.121 0.879 15 C 0.028 3.972 16 C -0.011 4.011 17 H 0.149 0.851 18 N -0.345 5.345 19 C 0.302 3.698 20 O -0.405 6.405 21 C -0.143 4.143 22 C -0.089 4.089 23 C -0.093 4.093 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.102 4.102 27 Cl -0.023 7.023 28 C 0.108 3.892 29 F -0.101 7.101 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.233 0.767 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.352 -24.748 -6.473 26.910 hybrid contribution 0.963 0.757 -0.472 1.312 sum -7.389 -23.992 -6.944 26.047 Atomic orbital electron populations 1.69887 1.05060 1.25571 1.55667 1.24904 0.95654 0.97999 1.01715 0.86178 0.78535 0.82891 0.78019 1.21089 1.21537 1.20954 1.18953 0.90808 0.82303 1.43503 0.90560 1.45169 1.13331 0.99978 1.73150 1.21067 0.86968 0.92426 0.93652 1.24629 1.02321 0.92518 1.00558 0.87898 1.24349 0.90490 1.02436 1.03044 0.87944 1.21128 0.97254 0.85823 0.92962 1.21856 0.98591 0.84901 0.95720 0.85133 1.45342 1.58480 1.17895 1.12786 1.20291 0.77801 0.83007 0.88711 1.90749 1.52636 1.79964 1.17114 1.20624 1.02681 0.92867 0.98110 1.19299 0.94267 0.96191 0.99178 1.21047 0.92297 0.97582 0.98407 1.21137 1.00645 0.95036 0.96755 1.20982 0.90749 0.99842 0.98732 1.20955 0.93371 0.96091 0.99744 1.98391 1.74867 1.60971 1.68048 1.17182 0.77686 0.96062 0.98252 1.91544 1.28398 1.95429 1.94701 0.93471 0.89042 0.95658 0.92991 0.95453 0.76698 0.86917 0.87341 0.84256 0.84200 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.86 55.49 0.60 -26.19 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.28 3.38 -168.83 -0.57 -15.85 16 10 C 0.18 4.44 5.70 -2.41 -0.01 4.43 16 11 C -0.18 -3.32 7.05 -89.29 -0.63 -3.95 16 12 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.18 -3.25 7.05 -89.26 -0.63 -3.88 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.16 3.33 7.04 -2.38 -0.02 3.31 16 16 C 0.10 1.60 5.98 -67.93 -0.41 1.19 16 17 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 18 N -0.70 -8.90 5.56 -53.81 -0.30 -9.20 16 19 C 0.52 6.87 7.82 -10.99 -0.09 6.78 16 20 O -0.53 -9.47 15.52 5.55 0.09 -9.38 16 21 C -0.10 -0.90 5.56 -29.03 -0.16 -1.06 16 22 C -0.09 -0.88 4.43 -104.56 -0.46 -1.34 16 23 C -0.08 -0.59 9.67 -39.59 -0.38 -0.97 16 24 C -0.12 -0.81 10.04 -39.58 -0.40 -1.21 16 25 C -0.08 -0.67 9.83 -39.56 -0.39 -1.06 16 26 C -0.07 -0.78 6.33 -39.44 -0.25 -1.03 16 27 Cl -0.05 -0.54 28.62 -51.86 -1.48 -2.02 16 28 C 0.13 1.50 7.11 -39.39 -0.28 1.22 16 29 F -0.12 -1.62 16.23 2.25 0.04 -1.58 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 3.77 8.83 -40.82 -0.36 3.41 16 36 H 0.11 0.61 8.00 -51.93 -0.42 0.19 16 37 H 0.11 0.78 7.94 -51.93 -0.41 0.37 16 38 H 0.14 0.76 8.04 -52.49 -0.42 0.33 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -33.86 360.12 -10.42 -44.28 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.84 Total: 1.98 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -4.35 Total: -4.33 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.27 Total: -51.24 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.86 -10.42 -44.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961885489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.269 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds