Wall clock time and date at job start Tue Mar 31 2020 20:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99956 * 2 1 4 4 H 1.48495 * 109.47321 * 240.00180 * 3 2 1 5 5 H 1.48506 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47101 * 119.99708 * 3 2 1 7 7 C 1.38808 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00388 * 189.10176 * 7 2 1 9 9 N 1.36942 * 119.99956 * 9.09605 * 7 2 1 10 10 C 1.48148 * 127.83365 * 15.57713 * 9 7 2 11 11 C 1.54390 * 104.61604 * 140.41565 * 10 9 7 12 12 H 1.09003 * 117.61328 * 242.76747 * 11 10 9 13 13 C 1.54154 * 104.96639 * 23.82689 * 11 10 9 14 14 H 1.09002 * 121.78922 * 222.20278 * 13 11 10 15 15 C 1.48142 * 127.83676 * 195.57470 * 9 7 2 16 16 C 1.52994 * 59.75124 * 114.14241 * 13 11 10 17 17 H 1.09006 * 117.43948 * 252.37552 * 16 13 11 18 18 N 1.46500 * 117.44829 * 107.62921 * 16 13 11 19 19 C 1.34767 * 120.00148 * 135.72023 * 18 16 13 20 20 O 1.21285 * 120.00089 * 0.27711 * 19 18 16 21 21 C 1.50701 * 119.99953 * 180.28306 * 19 18 16 22 22 C 1.50707 * 109.47290 * 180.02562 * 21 19 18 23 23 C 1.38238 * 120.00581 * 99.99680 * 22 21 19 24 24 C 1.38220 * 120.04512 * 179.97438 * 23 22 21 25 25 C 1.38263 * 120.06046 * 359.97438 * 24 23 22 26 26 C 1.38267 * 120.01539 * 359.97438 * 25 24 23 27 27 Cl 1.73602 * 120.02791 * 180.02562 * 26 25 24 28 28 C 1.38402 * 120.00018 * 279.72193 * 22 21 19 29 29 F 1.35097 * 120.03569 * 359.97438 * 28 22 21 30 30 H 0.97004 * 119.99921 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.41029 * 21.62614 * 10 9 7 32 32 H 1.09005 * 110.40541 * 259.19238 * 10 9 7 33 33 H 1.08990 * 110.41192 * 338.36982 * 15 9 7 34 34 H 1.08994 * 110.40548 * 100.68971 * 15 9 7 35 35 H 0.97007 * 119.99629 * 316.00250 * 18 16 13 36 36 H 1.09007 * 109.46927 * 299.99689 * 21 19 18 37 37 H 1.08996 * 109.47759 * 59.99503 * 21 19 18 38 38 H 1.07995 * 119.97866 * 359.97438 * 23 22 21 39 39 H 1.08002 * 119.96852 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.98886 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0800 -1.2081 0.1474 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0342 -2.5704 -0.7124 11 6 0.0638 -3.8159 -1.6194 12 1 -0.1484 -3.6861 -2.6807 13 6 1.2856 -4.5957 -1.0944 14 1 2.0088 -5.0525 -1.7699 15 6 1.8197 -3.7545 0.0857 16 6 -0.1183 -5.1924 -0.9766 17 1 -0.5674 -5.2278 0.0159 18 7 -0.4526 -6.3116 -1.8609 19 6 -1.1012 -7.3867 -1.3713 20 8 -1.4126 -7.4255 -0.1997 21 6 -1.4395 -8.5408 -2.2795 22 6 -2.1582 -9.6059 -1.4920 23 6 -3.5354 -9.7052 -1.5603 24 6 -4.1954 -10.6821 -0.8388 25 6 -3.4794 -11.5618 -0.0481 26 6 -2.1018 -11.4653 0.0213 27 17 -1.2025 -12.5701 1.0135 28 6 -1.4391 -10.4883 -0.7047 29 9 -0.0928 -10.3958 -0.6421 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3433 -1.7010 -1.2926 32 1 -0.7317 -2.7500 0.1058 33 1 2.9091 -3.7785 0.1075 34 1 1.4133 -4.1182 1.0294 35 1 -0.2035 -6.2806 -2.7979 36 1 -2.0821 -8.1909 -3.0875 37 1 -0.5222 -8.9547 -2.6981 38 1 -4.0959 -9.0191 -2.1778 39 1 -5.2713 -10.7584 -0.8928 40 1 -3.9962 -12.3249 0.5148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961885489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:58 Heat of formation + Delta-G solvation = -20.921881 kcal Electronic energy + Delta-G solvation = -25705.674070 eV Core-core repulsion = 21654.698719 eV Total energy + Delta-G solvation = -4050.975350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.04067 -41.26716 -40.30863 -39.48922 -37.60591 -36.08630 -34.43818 -33.84285 -32.10676 -31.40805 -29.02004 -28.89407 -27.45298 -24.11188 -23.83422 -22.97239 -21.95468 -21.39583 -20.90157 -18.90214 -18.76822 -18.16266 -17.84216 -17.75939 -17.00140 -16.73480 -16.70067 -16.04652 -15.66495 -15.45860 -15.21704 -14.87193 -14.65134 -14.50664 -14.39285 -13.99466 -13.76631 -13.54473 -13.34369 -13.19729 -12.89651 -12.69982 -12.68408 -12.47554 -12.41147 -12.16190 -12.06489 -11.96206 -11.88034 -11.67122 -11.10042 -10.84924 -10.70737 -9.86800 -9.71841 -9.69539 -8.94114 -7.92862 -5.30095 -0.02578 0.01774 0.96343 1.46556 1.49826 1.53244 1.56679 1.95040 2.46505 2.51120 2.84398 3.08148 3.27581 3.38366 3.58260 3.79132 3.83904 3.84702 3.92478 4.02697 4.12875 4.19275 4.30188 4.36545 4.50845 4.51723 4.67356 4.80871 4.88039 4.93463 4.96256 4.97010 5.17594 5.26381 5.30253 5.40671 5.43736 5.53597 5.63260 5.72008 6.15319 6.52505 6.99012 7.23240 7.65569 8.44147 9.20911 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002059 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.344751 B =13593.406035 C =13992.655472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.983 3.017 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.617 5.617 10 C 0.188 3.812 11 C -0.173 4.173 12 H 0.132 0.868 13 C -0.169 4.169 14 H 0.136 0.864 15 C 0.147 3.853 16 C 0.116 3.884 17 H 0.100 0.900 18 N -0.681 5.681 19 C 0.514 3.486 20 O -0.580 6.580 21 C -0.093 4.093 22 C -0.104 4.104 23 C -0.076 4.076 24 C -0.110 4.110 25 C -0.086 4.086 26 C -0.094 4.094 27 Cl -0.063 7.063 28 C 0.094 3.906 29 F -0.141 7.141 30 H 0.251 0.749 31 H 0.061 0.939 32 H -0.007 1.007 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.421 0.579 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 -26.072 -9.774 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.811 3.189 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.341 5.341 10 C 0.062 3.938 11 C -0.194 4.194 12 H 0.150 0.850 13 C -0.190 4.190 14 H 0.153 0.847 15 C 0.021 3.979 16 C 0.009 3.991 17 H 0.118 0.882 18 N -0.332 5.332 19 C 0.302 3.698 20 O -0.459 6.459 21 C -0.132 4.132 22 C -0.105 4.105 23 C -0.094 4.094 24 C -0.128 4.128 25 C -0.105 4.105 26 C -0.121 4.121 27 Cl -0.034 7.034 28 C 0.074 3.926 29 F -0.120 7.120 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.011 0.989 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.259 0.741 36 H 0.173 0.827 37 H 0.144 0.856 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.874 -25.945 -8.826 28.807 hybrid contribution 1.047 1.045 0.331 1.516 sum -7.827 -24.900 -8.495 27.449 Atomic orbital electron populations 1.70092 1.06578 1.25940 1.56948 1.25783 0.96531 1.01402 1.01888 0.85093 0.77178 0.78291 0.78383 1.19966 1.21899 1.20236 1.19362 0.91394 0.83501 1.42985 0.90037 1.45481 1.13841 1.01033 1.73731 1.20813 0.85908 0.93935 0.93160 1.24309 1.03465 0.90896 1.00774 0.85042 1.24250 0.91182 1.01957 1.01580 0.84672 1.21253 0.97938 0.84619 0.94048 1.21331 0.97383 0.85330 0.95058 0.88196 1.45146 1.58231 1.16528 1.13291 1.21166 0.76379 0.83603 0.88638 1.90739 1.54560 1.80944 1.19687 1.20695 1.04379 0.90422 0.97681 1.19584 0.95304 0.96230 0.99389 1.21501 0.91603 0.97942 0.98309 1.21607 1.02309 0.93728 0.95147 1.21351 0.89825 1.00495 0.98790 1.21230 0.94384 0.96286 1.00205 1.98377 1.75363 1.61286 1.68392 1.17612 0.77245 0.97681 1.00039 1.91482 1.29755 1.95698 1.95041 0.94004 0.92055 0.98884 0.91964 0.96776 0.74134 0.82659 0.85567 0.81325 0.80748 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.32 10.86 21.65 0.24 -57.09 16 2 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 3 Si 0.98 45.49 29.56 68.60 2.03 47.52 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.82 10.35 84.03 0.87 -12.95 16 8 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 9 N -0.62 -32.49 3.38 -688.06 -2.32 -34.82 16 10 C 0.19 9.34 5.70 86.53 0.49 9.83 16 11 C -0.17 -6.27 7.05 -9.93 -0.07 -6.34 16 12 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 13 C -0.17 -5.76 7.05 -9.91 -0.07 -5.83 16 14 H 0.14 3.80 8.14 -2.39 -0.02 3.79 16 15 C 0.15 6.35 7.04 86.55 0.61 6.96 16 16 C 0.12 3.80 5.98 44.99 0.27 4.06 16 17 H 0.10 3.99 7.40 -2.38 -0.02 3.97 16 18 N -0.68 -15.62 5.56 -442.54 -2.46 -18.08 16 19 C 0.51 12.66 7.82 87.66 0.69 13.34 16 20 O -0.58 -20.64 15.52 -3.04 -0.05 -20.68 16 21 C -0.09 -1.31 5.56 29.10 0.16 -1.15 16 22 C -0.10 -1.85 4.43 -19.82 -0.09 -1.94 16 23 C -0.08 -0.94 9.67 22.27 0.22 -0.72 16 24 C -0.11 -1.17 10.04 22.27 0.22 -0.94 16 25 C -0.09 -1.22 9.83 22.28 0.22 -1.00 16 26 C -0.09 -1.92 6.33 22.36 0.14 -1.78 16 27 Cl -0.06 -1.32 28.62 -2.72 -0.08 -1.40 16 28 C 0.09 2.16 7.11 22.39 0.16 2.32 16 29 F -0.14 -3.79 16.23 44.97 0.73 -3.06 16 30 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.06 3.39 6.51 -2.39 -0.02 3.38 16 32 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.42 6.19 8.83 -92.70 -0.82 5.37 16 36 H 0.16 0.86 8.00 -2.38 -0.02 0.84 16 37 H 0.13 1.39 7.94 -2.39 -0.02 1.37 16 38 H 0.17 1.03 8.04 -2.91 -0.02 1.00 16 39 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -78.66 360.12 2.63 -76.03 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.27 Total: 10.82 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 4.28 Total: 0.76 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.55 Total: -109.99 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.73 Total: -3.06 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -78.66 2.63 -76.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961885489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.110 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds