Wall clock time and date at job start Tue Mar 31 2020 20:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99940 * 2 1 4 4 H 1.48491 * 109.47430 * 240.00344 * 3 2 1 5 5 H 1.48498 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46745 * 120.00416 * 3 2 1 7 7 C 1.38817 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00116 * 189.10160 * 7 2 1 9 9 N 1.36932 * 119.99827 * 9.10103 * 7 2 1 10 10 C 1.48152 * 127.83984 * 15.62261 * 9 7 2 11 11 C 1.54384 * 104.62094 * 140.41307 * 10 9 7 12 12 H 1.09000 * 117.04371 * 245.35404 * 11 10 9 13 13 C 1.57116 * 118.20333 * 86.19484 * 11 10 9 14 14 H 1.09005 * 117.15214 * 16.42070 * 13 11 10 15 15 C 1.53005 * 118.27542 * 162.01505 * 13 11 10 16 16 N 1.46499 * 109.47156 * 243.46951 * 15 13 11 17 17 C 1.34778 * 119.99801 * 179.97438 * 16 15 13 18 18 O 1.21571 * 119.99941 * 359.97438 * 17 16 15 19 19 C 1.47727 * 119.99925 * 179.97438 * 17 16 15 20 20 C 1.39663 * 120.10985 * 180.02562 * 19 17 16 21 21 C 1.37831 * 119.90151 * 180.02562 * 20 19 17 22 22 C 1.38642 * 120.13586 * 0.02562 * 21 20 19 23 23 F 1.35099 * 119.88975 * 180.02562 * 22 21 20 24 24 C 1.38743 * 120.22911 * 359.97438 * 22 21 20 25 25 Cl 1.73593 * 119.95639 * 179.97438 * 24 22 21 26 26 C 1.37973 * 120.09087 * 359.72513 * 24 22 21 27 27 C 1.52991 * 59.65524 * 268.96603 * 13 11 10 28 28 H 1.09006 * 119.53720 * 247.55156 * 27 13 11 29 29 C 1.48150 * 127.83779 * 195.61911 * 9 7 2 30 30 H 0.96999 * 120.00326 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.40122 * 259.19835 * 10 9 7 32 32 H 1.08992 * 110.40634 * 21.50661 * 10 9 7 33 33 H 1.09004 * 109.46533 * 3.46981 * 15 13 11 34 34 H 1.08997 * 109.46773 * 123.46222 * 15 13 11 35 35 H 0.96992 * 120.00121 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.05086 * 359.97438 * 20 19 17 37 37 H 1.07999 * 119.93725 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.06857 * 180.27858 * 26 24 22 39 39 H 1.08997 * 110.40934 * 100.80433 * 29 9 7 40 40 H 1.08999 * 110.40302 * 338.36907 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 0.1474 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0338 -2.5705 -0.7135 11 6 0.0647 -3.8163 -1.6200 12 1 -0.1060 -3.6681 -2.6863 13 6 -0.0991 -5.2315 -0.9574 14 1 -0.5407 -5.2664 0.0385 15 6 -0.4205 -6.4226 -1.8624 16 7 -1.7346 -6.9647 -1.5078 17 6 -2.2292 -8.0248 -2.1772 18 8 -1.5851 -8.5309 -3.0755 19 6 -3.5540 -8.5717 -1.8193 20 6 -4.0685 -9.6705 -2.5111 21 6 -5.3052 -10.1770 -2.1740 22 6 -6.0392 -9.5976 -1.1503 23 9 -7.2507 -10.0984 -0.8237 24 6 -5.5334 -8.5059 -0.4595 25 17 -6.4587 -7.7856 0.8206 26 6 -4.2937 -7.9951 -0.7850 27 6 1.2865 -4.5970 -1.0926 28 1 2.0182 -5.0427 -1.7665 29 6 1.8193 -3.7546 0.0864 30 1 -0.4850 0.8400 0.0004 31 1 -0.7319 -2.7497 0.1043 32 1 -0.3432 -1.7005 -1.2924 33 1 -0.4306 -6.0964 -2.9024 34 1 0.3383 -7.1940 -1.7309 35 1 -2.2486 -6.5606 -0.7914 36 1 -3.4985 -10.1221 -3.3095 37 1 -5.7038 -11.0264 -2.7088 38 1 -3.8984 -7.1481 -0.2440 39 1 1.4105 -4.1187 1.0289 40 1 2.9088 -3.7786 0.1090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978650020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:19 Heat of formation + Delta-G solvation = 1.381728 kcal Electronic energy + Delta-G solvation = -25216.467193 eV Core-core repulsion = 21166.459000 eV Total energy + Delta-G solvation = -4050.008193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.52138 -40.58049 -38.95812 -38.38615 -36.96526 -35.17986 -33.43386 -31.81212 -31.27524 -30.64782 -27.55014 -27.12832 -25.15722 -24.05748 -23.40811 -21.23913 -21.00822 -20.01647 -19.23933 -18.68742 -17.77420 -17.28195 -16.85543 -16.32679 -15.94506 -15.74691 -15.45869 -14.91027 -14.66922 -14.49074 -14.14669 -13.83613 -13.77958 -13.49994 -13.28387 -13.11646 -12.85232 -12.68886 -11.97995 -11.95727 -11.84368 -11.52153 -11.29405 -11.13334 -10.84747 -10.76210 -10.34118 -10.29725 -10.19684 -9.77180 -9.68100 -9.50762 -9.28824 -9.19665 -8.98678 -8.65033 -6.90437 -5.83196 -3.17530 0.05112 0.43705 1.47418 2.26964 2.84486 3.19568 3.36549 3.41396 3.42439 3.42712 3.97562 4.00291 4.19729 4.42173 4.42858 4.58656 4.79297 4.85077 5.10332 5.21949 5.23681 5.31073 5.38346 5.44357 5.46559 5.59892 5.72372 5.78622 5.85929 5.90778 5.98539 6.20190 6.21398 6.49688 6.60590 6.65974 6.87619 7.24383 7.31772 7.49216 7.68149 7.91304 8.17504 9.07687 9.70465 10.47248 11.31057 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.002123 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.046529 B =13186.347240 C =14441.037735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.182 3.818 11 C -0.167 4.167 12 H 0.105 0.895 13 C -0.156 4.156 14 H 0.104 0.896 15 C 0.156 3.844 16 N -0.715 5.715 17 C 0.559 3.441 18 O -0.534 6.534 19 C -0.129 4.129 20 C -0.027 4.027 21 C -0.149 4.149 22 C 0.132 3.868 23 F -0.122 7.122 24 C -0.082 4.082 25 Cl -0.039 7.039 26 C -0.049 4.049 27 C -0.160 4.160 28 H 0.103 0.897 29 C 0.152 3.848 30 H 0.255 0.745 31 H 0.022 0.978 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.024 0.976 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 -20.916 -2.703 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.057 3.943 11 C -0.187 4.187 12 H 0.123 0.877 13 C -0.175 4.175 14 H 0.122 0.878 15 C 0.033 3.967 16 N -0.367 5.367 17 C 0.345 3.655 18 O -0.412 6.412 19 C -0.133 4.133 20 C -0.046 4.046 21 C -0.168 4.168 22 C 0.112 3.888 23 F -0.100 7.100 24 C -0.110 4.110 25 Cl -0.010 7.010 26 C -0.069 4.069 27 C -0.180 4.180 28 H 0.121 0.879 29 C 0.026 3.974 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.238 0.762 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.816 -20.890 -3.172 24.209 hybrid contribution -0.184 1.045 0.579 1.208 sum -12.000 -19.846 -2.593 23.336 Atomic orbital electron populations 1.69877 1.05068 1.25577 1.55690 1.24897 0.95650 0.97993 1.01696 0.86189 0.78564 0.82905 0.78040 1.21051 1.21524 1.20967 1.18952 0.90801 0.82379 1.43522 0.90615 1.45202 1.13399 0.99971 1.73205 1.21084 0.86831 0.92771 0.93661 1.25024 1.02581 0.91272 0.99823 0.87738 1.23132 1.01789 0.92803 0.99779 0.87821 1.20887 0.82871 0.94320 0.98608 1.45966 1.21021 1.31818 1.37854 1.17954 0.85053 0.80292 0.82156 1.90805 1.60097 1.59939 1.30385 1.20023 0.95989 0.98819 0.98461 1.21270 0.93481 0.92589 0.97248 1.21156 0.95381 1.02466 0.97774 1.17676 0.82132 0.93174 0.95824 1.91572 1.40831 1.86064 1.91516 1.20870 0.95650 0.97876 0.96612 1.98424 1.72527 1.82120 1.47918 1.21197 0.91378 0.98844 0.95439 1.23836 0.90071 1.01540 1.02592 0.87890 1.21178 0.97232 0.86051 0.92968 0.93487 0.95979 0.89178 0.90980 0.90851 0.76199 0.82764 0.82896 0.83266 0.95783 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.86 55.49 0.60 -25.77 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.66 29.56 -169.99 -5.03 16.63 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.27 10.35 -15.06 -0.16 -6.42 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.59 16 9 N -0.59 -14.88 3.38 -168.86 -0.57 -15.46 16 10 C 0.18 4.22 5.73 -2.41 -0.01 4.20 16 11 C -0.17 -2.99 7.00 -86.99 -0.61 -3.60 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 13 C -0.16 -2.20 5.54 -88.39 -0.49 -2.69 16 14 H 0.10 1.44 8.04 -51.93 -0.42 1.02 16 15 C 0.16 1.91 5.98 -4.04 -0.02 1.88 16 16 N -0.72 -7.55 5.51 -61.28 -0.34 -7.89 16 17 C 0.56 6.36 7.77 -12.38 -0.10 6.27 16 18 O -0.53 -7.79 16.34 5.30 0.09 -7.70 16 19 C -0.13 -1.16 5.87 -104.97 -0.62 -1.77 16 20 C -0.03 -0.21 9.59 -39.20 -0.38 -0.58 16 21 C -0.15 -0.98 10.01 -39.58 -0.40 -1.37 16 22 C 0.13 1.08 7.28 -39.25 -0.29 0.79 16 23 F -0.12 -1.07 16.83 2.25 0.04 -1.03 16 24 C -0.08 -0.70 6.32 -39.49 -0.25 -0.95 16 25 Cl -0.04 -0.34 28.60 -51.86 -1.48 -1.83 16 26 C -0.05 -0.39 9.31 -39.16 -0.36 -0.75 16 27 C -0.16 -2.68 6.71 -89.22 -0.60 -3.28 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 29 C 0.15 3.08 7.03 -2.41 -0.02 3.06 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 33 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.40 3.43 6.43 -40.82 -0.26 3.16 16 36 H 0.15 1.08 7.65 -52.49 -0.40 0.68 16 37 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.15 0.95 6.40 -52.49 -0.34 0.61 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -31.38 358.40 -10.35 -41.73 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.68 Total: 1.38 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.39 Total: -5.46 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.31 Total: -49.11 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.48 Total: -1.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.38 -10.35 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978650020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.110 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds