Wall clock time and date at job start Tue Mar 31 2020 20:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46972 * 119.99851 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.09000 * 117.40540 * 16.12369 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21563 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.47693 * 119.99618 * 180.02562 * 17 16 15 20 20 C 1.39668 * 120.16473 * 359.72225 * 19 17 16 21 21 C 1.37858 * 119.90521 * 179.76948 * 20 19 17 22 22 C 1.38454 * 120.22733 * 0.50902 * 21 20 19 23 23 C 1.38299 * 120.32768 * 359.74614 * 22 21 20 24 24 Cl 1.73594 * 119.95391 * 179.97438 * 23 22 21 25 25 C 1.38438 * 120.09066 * 359.97438 * 23 22 21 26 26 F 1.35105 * 120.11486 * 180.02562 * 25 23 22 27 27 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 28 28 H 1.09002 * 119.53987 * 248.23147 * 27 13 11 29 29 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 30 30 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 32 32 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 33 33 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 34 34 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 35 35 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 36 36 H 1.08004 * 120.04941 * 0.02562 * 20 19 17 37 37 H 1.08003 * 119.88451 * 180.25125 * 21 20 19 38 38 H 1.07994 * 119.83565 * 179.71858 * 22 21 20 39 39 H 1.08997 * 110.21952 * 101.72307 * 29 9 7 40 40 H 1.09001 * 112.25708 * 338.13628 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3524 -5.2957 -0.7160 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9161 -8.6976 2.0093 19 6 -1.3241 -9.9630 0.1376 20 6 -0.7294 -9.9765 -1.1261 21 6 -0.6626 -11.1528 -1.8417 22 6 -1.1924 -12.3192 -1.3166 23 6 -1.7882 -12.3156 -0.0685 24 17 -2.4500 -13.7835 0.5803 25 6 -1.8574 -11.1431 0.6641 26 9 -2.4388 -11.1391 1.8837 27 6 -0.3710 -3.7838 0.9514 28 1 -0.9345 -3.6104 1.8682 29 6 -0.1793 -2.5892 -0.0071 30 1 -0.4850 0.8400 0.0004 31 1 2.9073 -3.7538 0.3762 32 1 1.8506 -4.1842 -1.0040 33 1 -0.4205 -6.4517 2.1142 34 1 -1.9906 -6.0767 1.3644 35 1 -0.4617 -7.5786 -0.4751 36 1 -0.3187 -9.0675 -1.5403 37 1 -0.1990 -11.1637 -2.8172 38 1 -1.1407 -13.2362 -1.8847 39 1 -0.5204 -2.8478 -1.0095 40 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978672857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:01 Heat of formation + Delta-G solvation = 7.619498 kcal Electronic energy + Delta-G solvation = -25409.099172 eV Core-core repulsion = 21359.361469 eV Total energy + Delta-G solvation = -4049.737703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.25242 -40.42366 -39.06402 -38.46359 -36.99674 -35.06727 -33.40318 -31.94241 -31.00824 -30.66859 -27.55506 -27.04150 -25.25759 -24.16582 -23.11543 -21.19284 -21.05300 -20.00565 -19.20183 -18.62000 -17.52475 -17.20289 -16.89331 -16.27285 -16.01174 -15.73495 -15.22698 -15.17630 -14.82451 -14.35006 -13.97013 -13.75547 -13.63983 -13.45538 -13.13346 -12.87855 -12.79194 -12.64634 -12.18168 -12.01192 -11.86407 -11.55548 -11.28006 -10.97155 -10.87031 -10.68931 -10.34519 -10.22136 -10.18053 -9.70511 -9.65140 -9.40126 -9.26534 -9.17534 -8.95267 -8.81791 -6.95357 -5.68886 -3.13301 0.08064 0.40254 1.44390 2.35489 2.83991 3.16257 3.38021 3.42135 3.43561 3.51794 4.04052 4.14636 4.15917 4.32390 4.44092 4.51904 4.78728 4.90843 5.19912 5.25742 5.27609 5.34381 5.39926 5.42990 5.49042 5.57613 5.72787 5.84618 5.87442 5.92171 5.99448 6.23152 6.25783 6.51820 6.59754 6.68257 6.88475 7.25527 7.29134 7.51064 7.77327 7.95411 8.25556 9.09617 9.73985 10.44925 11.34340 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.036856 B = 0.001836 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.527003 B =15243.759837 C =15683.098276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.918 3.082 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.172 4.172 12 H 0.103 0.897 13 C -0.156 4.156 14 H 0.102 0.898 15 C 0.155 3.845 16 N -0.714 5.714 17 C 0.555 3.445 18 O -0.522 6.522 19 C -0.159 4.159 20 C -0.053 4.053 21 C -0.125 4.125 22 C -0.059 4.059 23 C -0.088 4.088 24 Cl -0.043 7.043 25 C 0.169 3.831 26 F -0.101 7.101 27 C -0.153 4.153 28 H 0.103 0.897 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.015 0.985 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 -26.314 -4.734 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.032 3.968 11 C -0.192 4.192 12 H 0.121 0.879 13 C -0.175 4.175 14 H 0.120 0.880 15 C 0.032 3.968 16 N -0.366 5.366 17 C 0.340 3.660 18 O -0.399 6.399 19 C -0.163 4.163 20 C -0.072 4.072 21 C -0.143 4.143 22 C -0.077 4.077 23 C -0.116 4.116 24 Cl -0.014 7.014 25 C 0.147 3.853 26 F -0.078 7.078 27 C -0.173 4.173 28 H 0.121 0.879 29 C 0.030 3.970 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.236 0.764 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.033 0.967 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.444 -26.086 -3.812 26.587 hybrid contribution 0.521 0.529 -0.135 0.755 sum -2.923 -25.556 -3.948 26.024 Atomic orbital electron populations 1.69472 1.04967 1.24920 1.57829 1.24761 0.95704 0.97718 1.02726 0.86097 0.78361 0.82840 0.77874 1.21229 1.21517 1.21176 1.19063 0.90343 0.82249 1.42783 0.90356 1.46154 1.01343 0.99374 1.85798 1.21092 0.94934 0.86011 0.94723 1.24022 0.90676 1.02748 1.01734 0.87930 1.22570 1.01938 0.94008 0.98978 0.88025 1.20957 1.01149 0.80731 0.93972 1.45910 1.59916 1.08672 1.22131 1.17838 0.79264 0.83062 0.85809 1.90869 1.43550 1.85595 1.19910 1.20093 1.05512 0.93417 0.97266 1.21413 0.94606 0.99445 0.91690 1.21168 1.00591 0.91392 1.01163 1.21207 0.94213 1.00009 0.92319 1.20949 1.05943 0.87903 0.96776 1.98407 1.84156 1.32795 1.86030 1.17389 0.94312 0.91898 0.81687 1.91652 1.80342 1.96803 1.39042 1.24189 0.99806 0.90828 1.02483 0.87913 1.22567 0.85366 0.95522 0.93544 0.93501 0.93213 0.95955 0.91096 0.90766 0.76369 0.83698 0.83429 0.83390 0.96694 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.12 55.49 0.56 -25.80 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -5.92 10.42 -15.05 -0.16 -6.08 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.11 3.46 -165.72 -0.57 -15.68 16 10 C 0.16 3.19 7.05 -2.41 -0.02 3.17 16 11 C -0.17 -2.95 6.74 -89.22 -0.60 -3.55 16 12 H 0.10 1.66 8.12 -51.93 -0.42 1.24 16 13 C -0.16 -2.27 5.38 -90.61 -0.49 -2.75 16 14 H 0.10 1.41 8.04 -51.93 -0.42 1.00 16 15 C 0.15 2.03 5.95 -4.04 -0.02 2.00 16 16 N -0.71 -7.86 5.51 -61.30 -0.34 -8.20 16 17 C 0.55 7.13 7.77 -12.40 -0.10 7.04 16 18 O -0.52 -8.88 15.34 5.31 0.08 -8.79 16 19 C -0.16 -1.60 5.88 -104.92 -0.62 -2.22 16 20 C -0.05 -0.33 9.54 -39.19 -0.37 -0.71 16 21 C -0.12 -0.59 10.03 -39.64 -0.40 -0.98 16 22 C -0.06 -0.33 9.82 -39.48 -0.39 -0.72 16 23 C -0.09 -0.75 6.32 -39.49 -0.25 -1.00 16 24 Cl -0.04 -0.36 28.61 -51.86 -1.48 -1.85 16 25 C 0.17 1.86 7.26 -38.92 -0.28 1.57 16 26 F -0.10 -1.38 15.12 2.25 0.03 -1.35 16 27 C -0.15 -2.84 6.76 -89.23 -0.60 -3.45 16 28 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 29 C 0.15 3.60 6.43 -0.31 0.00 3.60 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.40 3.22 6.44 -40.82 -0.26 2.96 16 36 H 0.15 0.56 6.40 -52.48 -0.34 0.23 16 37 H 0.15 0.26 8.06 -52.48 -0.42 -0.16 16 38 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.14 3.58 5.34 -51.93 -0.28 3.30 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -32.72 355.11 -10.41 -43.13 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.63 Total: 1.03 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.39 Total: -4.55 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.35 Total: -49.68 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.03 Total: -1.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.72 -10.41 -43.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978672857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.750 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds