Wall clock time and date at job start Tue Mar 31 2020 20:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46972 * 119.99851 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.09000 * 117.40540 * 16.12369 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21563 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.47693 * 119.99618 * 180.02562 * 17 16 15 20 20 C 1.39668 * 120.16473 * 359.72225 * 19 17 16 21 21 C 1.37858 * 119.90521 * 179.76948 * 20 19 17 22 22 C 1.38454 * 120.22733 * 0.50902 * 21 20 19 23 23 C 1.38299 * 120.32768 * 359.74614 * 22 21 20 24 24 Cl 1.73594 * 119.95391 * 179.97438 * 23 22 21 25 25 C 1.38438 * 120.09066 * 359.97438 * 23 22 21 26 26 F 1.35105 * 120.11486 * 180.02562 * 25 23 22 27 27 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 28 28 H 1.09002 * 119.53987 * 248.23147 * 27 13 11 29 29 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 30 30 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 32 32 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 33 33 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 34 34 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 35 35 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 36 36 H 1.08004 * 120.04941 * 0.02562 * 20 19 17 37 37 H 1.08003 * 119.88451 * 180.25125 * 21 20 19 38 38 H 1.07994 * 119.83565 * 179.71858 * 22 21 20 39 39 H 1.08997 * 110.21952 * 101.72307 * 29 9 7 40 40 H 1.09001 * 112.25708 * 338.13628 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3524 -5.2957 -0.7160 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9161 -8.6976 2.0093 19 6 -1.3241 -9.9630 0.1376 20 6 -0.7294 -9.9765 -1.1261 21 6 -0.6626 -11.1528 -1.8417 22 6 -1.1924 -12.3192 -1.3166 23 6 -1.7882 -12.3156 -0.0685 24 17 -2.4500 -13.7835 0.5803 25 6 -1.8574 -11.1431 0.6641 26 9 -2.4388 -11.1391 1.8837 27 6 -0.3710 -3.7838 0.9514 28 1 -0.9345 -3.6104 1.8682 29 6 -0.1793 -2.5892 -0.0071 30 1 -0.4850 0.8400 0.0004 31 1 2.9073 -3.7538 0.3762 32 1 1.8506 -4.1842 -1.0040 33 1 -0.4205 -6.4517 2.1142 34 1 -1.9906 -6.0767 1.3644 35 1 -0.4617 -7.5786 -0.4751 36 1 -0.3187 -9.0675 -1.5403 37 1 -0.1990 -11.1637 -2.8172 38 1 -1.1407 -13.2362 -1.8847 39 1 -0.5204 -2.8478 -1.0095 40 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978672857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:01 Heat of formation + Delta-G solvation = -12.061275 kcal Electronic energy + Delta-G solvation = -25409.952595 eV Core-core repulsion = 21359.361469 eV Total energy + Delta-G solvation = -4050.591126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08499 -41.29664 -40.25903 -39.45465 -37.61065 -36.34996 -35.04212 -32.94212 -32.17423 -31.54814 -28.99842 -28.67993 -26.78575 -25.01214 -23.75582 -22.80385 -22.06301 -21.28179 -20.73864 -19.42719 -18.85461 -18.25334 -17.95402 -17.10777 -16.88218 -16.75340 -16.54511 -16.23130 -15.84512 -15.68793 -15.24759 -14.98780 -14.59136 -14.45648 -14.40177 -14.20354 -14.01693 -13.40969 -13.36354 -13.15240 -12.79069 -12.71347 -12.62354 -12.57138 -12.31521 -12.18577 -12.01047 -11.93036 -11.61770 -11.28046 -10.92223 -10.76446 -10.53699 -10.32628 -10.02164 -9.85529 -8.92735 -7.73989 -5.20786 -0.52400 -0.15934 0.84934 1.48373 1.51270 1.57512 1.61790 1.91468 2.47325 2.50262 2.74232 2.89689 3.31528 3.39367 3.60777 3.64977 3.72671 3.77112 3.88444 4.08092 4.18120 4.27197 4.31398 4.43925 4.61285 4.64866 4.70690 4.71889 4.77362 4.96353 4.97559 5.05297 5.10999 5.16397 5.35013 5.38672 5.47071 5.52759 5.53689 5.82635 6.30977 6.39335 7.04844 7.05451 7.72672 8.47356 9.26813 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.036856 B = 0.001836 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.527003 B =15243.759837 C =15683.098276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.154 3.846 11 C -0.163 4.163 12 H 0.117 0.883 13 C -0.107 4.107 14 H 0.119 0.881 15 C 0.162 3.838 16 N -0.700 5.700 17 C 0.553 3.447 18 O -0.574 6.574 19 C -0.177 4.177 20 C -0.043 4.043 21 C -0.106 4.106 22 C -0.047 4.047 23 C -0.097 4.097 24 Cl -0.051 7.051 25 C 0.133 3.867 26 F -0.129 7.129 27 C -0.174 4.174 28 H 0.102 0.898 29 C 0.154 3.846 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.418 0.582 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.179 0.821 39 H 0.007 0.993 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 -28.209 -7.086 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.264 4.264 3 Si 0.810 3.190 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.029 3.971 11 C -0.183 4.183 12 H 0.135 0.865 13 C -0.126 4.126 14 H 0.137 0.863 15 C 0.039 3.961 16 N -0.353 5.353 17 C 0.341 3.659 18 O -0.455 6.455 19 C -0.182 4.182 20 C -0.061 4.061 21 C -0.124 4.124 22 C -0.065 4.065 23 C -0.125 4.125 24 Cl -0.022 7.022 25 C 0.111 3.889 26 F -0.108 7.108 27 C -0.195 4.195 28 H 0.120 0.880 29 C 0.030 3.970 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.257 0.743 36 H 0.192 0.808 37 H 0.209 0.791 38 H 0.196 0.804 39 H 0.025 0.975 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.818 -28.017 -6.203 28.753 hybrid contribution 0.064 1.033 0.496 1.148 sum -1.754 -26.984 -5.707 27.636 Atomic orbital electron populations 1.69756 1.06183 1.24970 1.59048 1.25591 0.96602 1.00874 1.03334 0.85103 0.77059 0.78774 0.78101 1.20360 1.22098 1.20563 1.19442 0.90903 0.83582 1.41871 0.89922 1.46484 1.02273 1.00631 1.86089 1.21265 0.95581 0.84167 0.96095 1.23958 0.89846 1.02546 1.01920 0.86487 1.22426 0.98813 0.91590 0.99807 0.86323 1.20721 1.00547 0.81093 0.93770 1.45679 1.59516 1.07482 1.22576 1.18287 0.78186 0.84111 0.85348 1.90841 1.45899 1.86430 1.22304 1.19971 1.07758 0.91660 0.98770 1.21795 0.93019 1.01444 0.89874 1.21683 0.98662 0.89918 1.02159 1.21684 0.92144 1.01805 0.90868 1.21133 1.06724 0.86916 0.97716 1.98401 1.84421 1.32943 1.86425 1.17827 0.96072 0.93489 0.81475 1.91568 1.81232 1.97034 1.40937 1.23858 1.01926 0.91475 1.02206 0.87963 1.22282 0.84653 0.96189 0.93909 0.94263 0.92798 0.94466 0.91611 0.91306 0.74299 0.80834 0.79143 0.80364 0.97468 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.80 10.12 21.65 0.22 -55.58 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.23 -12.61 10.42 84.03 0.88 -11.74 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -31.62 3.46 -678.23 -2.35 -33.97 16 10 C 0.15 5.93 7.05 86.53 0.61 6.54 16 11 C -0.16 -5.26 6.74 -9.88 -0.07 -5.32 16 12 H 0.12 3.49 8.12 -2.39 -0.02 3.47 16 13 C -0.11 -2.86 5.38 -10.79 -0.06 -2.92 16 14 H 0.12 2.85 8.04 -2.39 -0.02 2.83 16 15 C 0.16 3.96 5.95 86.38 0.51 4.47 16 16 N -0.70 -13.75 5.51 -466.12 -2.57 -16.32 16 17 C 0.55 13.80 7.77 86.74 0.67 14.47 16 18 O -0.57 -20.05 15.34 -3.91 -0.06 -20.11 16 19 C -0.18 -3.32 5.88 -20.06 -0.12 -3.44 16 20 C -0.04 -0.37 9.54 22.53 0.21 -0.15 16 21 C -0.11 -0.44 10.03 22.23 0.22 -0.22 16 22 C -0.05 -0.34 9.82 22.34 0.22 -0.12 16 23 C -0.10 -1.52 6.32 22.33 0.14 -1.38 16 24 Cl -0.05 -0.83 28.61 -2.72 -0.08 -0.91 16 25 C 0.13 2.90 7.26 22.70 0.16 3.06 16 26 F -0.13 -3.79 15.12 44.97 0.68 -3.11 16 27 C -0.17 -6.40 6.76 -9.90 -0.07 -6.46 16 28 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 29 C 0.15 7.30 6.43 85.78 0.55 7.85 16 30 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 31 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.42 5.08 6.44 -92.71 -0.60 4.49 16 36 H 0.17 0.40 6.40 -2.91 -0.02 0.39 16 37 H 0.19 -0.72 8.06 -2.91 -0.02 -0.74 16 38 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.10 5.51 5.34 -2.39 -0.01 5.50 16 Total: -1.00 -76.03 355.11 2.72 -73.31 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.50 Total: 8.46 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 4.35 Total: 1.08 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -4.70 Total: -105.86 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.06 Total: -20.11 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.68 Total: -3.11 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -76.03 2.72 -73.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978672857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.250 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds