Wall clock time and date at job start Tue Mar 31 2020 20:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46972 * 119.99851 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.09000 * 117.40540 * 16.12369 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21553 * 119.99940 * 359.97438 * 17 16 15 19 19 C 1.47780 * 119.99751 * 180.02562 * 17 16 15 20 20 C 1.39634 * 120.14491 * 359.72030 * 19 17 16 21 21 C 1.37899 * 119.91525 * 179.76357 * 20 19 17 22 22 C 1.38392 * 120.20681 * 0.51947 * 21 20 19 23 23 C 1.38464 * 120.29257 * 359.73535 * 22 21 20 24 24 F 1.35101 * 119.96241 * 179.97438 * 23 22 21 25 25 C 1.38383 * 120.08223 * 0.02562 * 23 22 21 26 26 Cl 1.73601 * 120.10672 * 180.02562 * 25 23 22 27 27 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 28 28 H 1.09002 * 119.53987 * 248.23147 * 27 13 11 29 29 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 30 30 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 32 32 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 33 33 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 34 34 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 35 35 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.03889 * 0.02562 * 20 19 17 37 37 H 1.07998 * 119.89135 * 180.25292 * 21 20 19 38 38 H 1.08002 * 119.85493 * 179.71928 * 22 21 20 39 39 H 1.08997 * 110.21952 * 101.72307 * 29 9 7 40 40 H 1.09001 * 112.25708 * 338.13628 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3524 -5.2957 -0.7160 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9161 -8.6976 2.0092 19 6 -1.3240 -9.9637 0.1372 20 6 -0.7295 -9.9768 -1.1262 21 6 -0.6622 -11.1532 -1.8425 22 6 -1.1918 -12.3191 -1.3178 23 6 -1.7881 -12.3149 -0.0682 24 9 -2.3034 -13.4568 0.4374 25 6 -1.8578 -11.1422 0.6632 26 17 -2.6046 -11.1363 2.2303 27 6 -0.3710 -3.7838 0.9514 28 1 -0.9345 -3.6104 1.8682 29 6 -0.1793 -2.5892 -0.0071 30 1 -0.4850 0.8400 0.0004 31 1 2.9073 -3.7538 0.3762 32 1 1.8506 -4.1842 -1.0040 33 1 -0.4205 -6.4517 2.1142 34 1 -1.9906 -6.0767 1.3644 35 1 -0.4617 -7.5786 -0.4751 36 1 -0.3190 -9.0675 -1.5400 37 1 -0.1986 -11.1637 -2.8179 38 1 -1.1401 -13.2363 -1.8857 39 1 -0.5204 -2.8478 -1.0095 40 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978781478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:14 Heat of formation + Delta-G solvation = 15.511319 kcal Electronic energy + Delta-G solvation = -25415.489999 eV Core-core repulsion = 21366.094511 eV Total energy + Delta-G solvation = -4049.395488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.42100 -40.52799 -38.97065 -38.30834 -36.76802 -35.03286 -33.38520 -31.87206 -31.06301 -30.60681 -27.54560 -27.03666 -25.26883 -24.05846 -23.17688 -21.19013 -21.02734 -20.02057 -19.20180 -18.66070 -17.22331 -16.99088 -16.90056 -16.53506 -16.28436 -15.76834 -15.38305 -14.90101 -14.78951 -14.36744 -14.05247 -13.81760 -13.73188 -13.34180 -12.99475 -12.75667 -12.69701 -12.59382 -12.21020 -11.90645 -11.86989 -11.45038 -11.26421 -10.96612 -10.85968 -10.68059 -10.31828 -10.17883 -9.85109 -9.70058 -9.62086 -9.37074 -9.21408 -9.15915 -8.93298 -8.81352 -6.95013 -5.68645 -3.13027 0.09879 0.42260 1.70705 2.38499 2.80795 3.20256 3.38153 3.42273 3.43679 3.59542 4.04779 4.14816 4.17299 4.33467 4.44473 4.57085 4.82819 4.89690 5.17144 5.25994 5.28249 5.35236 5.39454 5.44315 5.49825 5.59942 5.73924 5.85931 5.88854 5.93008 6.02891 6.25678 6.26308 6.52569 6.60377 6.68970 6.89017 7.27963 7.30699 7.51333 7.77622 7.99016 8.25862 9.09887 9.74253 10.45246 11.34569 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.001961 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.234043 B =14276.382347 C =14853.853465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.918 3.082 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.172 4.172 12 H 0.103 0.897 13 C -0.156 4.156 14 H 0.101 0.899 15 C 0.156 3.844 16 N -0.715 5.715 17 C 0.549 3.451 18 O -0.512 6.512 19 C -0.098 4.098 20 C -0.085 4.085 21 C -0.093 4.093 22 C -0.120 4.120 23 C 0.099 3.901 24 F -0.124 7.124 25 C -0.029 4.029 26 Cl -0.009 7.009 27 C -0.153 4.153 28 H 0.103 0.897 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.015 0.985 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -25.364 -3.916 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.032 3.968 11 C -0.192 4.192 12 H 0.121 0.879 13 C -0.175 4.175 14 H 0.119 0.881 15 C 0.033 3.967 16 N -0.367 5.367 17 C 0.335 3.665 18 O -0.388 6.388 19 C -0.102 4.102 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.139 4.139 23 C 0.079 3.921 24 F -0.102 7.102 25 C -0.058 4.058 26 Cl 0.021 6.979 27 C -0.173 4.173 28 H 0.121 0.879 29 C 0.030 3.970 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.236 0.764 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.033 0.967 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.617 -25.050 -2.932 25.479 hybrid contribution 0.544 0.448 -0.221 0.738 sum -3.073 -24.602 -3.153 24.993 Atomic orbital electron populations 1.69473 1.04966 1.24912 1.57840 1.24758 0.95700 0.97708 1.02731 0.86100 0.78363 0.82850 0.77876 1.21227 1.21522 1.21177 1.19064 0.90343 0.82258 1.42773 0.90361 1.46152 1.01343 0.99368 1.85797 1.21093 0.94938 0.86015 0.94731 1.24017 0.90672 1.02760 1.01725 0.87942 1.22575 1.01905 0.94023 0.98987 0.88056 1.20938 1.01091 0.80741 0.93939 1.45943 1.59976 1.08700 1.22123 1.17925 0.79503 0.83101 0.86006 1.90893 1.42926 1.85364 1.19621 1.19743 1.01479 0.93222 0.95784 1.21447 0.97038 0.99497 0.92447 1.21092 0.98287 0.91161 1.00596 1.21358 0.98236 1.00787 0.93564 1.17310 0.99901 0.81412 0.93496 1.91566 1.84475 1.47107 1.87070 1.21101 1.00690 0.93164 0.90847 1.98448 1.79101 1.98513 1.21875 1.24184 0.99812 0.90850 1.02473 0.87933 1.22564 0.85359 0.95525 0.93544 0.93506 0.93223 0.95962 0.91122 0.90794 0.76446 0.83787 0.83472 0.83305 0.96704 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.12 55.49 0.56 -25.79 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -5.92 10.42 -15.05 -0.16 -6.08 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.09 3.46 -165.72 -0.57 -15.67 16 10 C 0.16 3.18 7.05 -2.41 -0.02 3.17 16 11 C -0.17 -2.94 6.74 -89.22 -0.60 -3.54 16 12 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16 13 C -0.16 -2.25 5.38 -90.61 -0.49 -2.74 16 14 H 0.10 1.41 8.04 -51.93 -0.42 0.99 16 15 C 0.16 2.00 5.95 -4.04 -0.02 1.97 16 16 N -0.72 -7.68 5.51 -61.27 -0.34 -8.01 16 17 C 0.55 6.75 7.77 -12.36 -0.10 6.65 16 18 O -0.51 -8.01 13.97 5.32 0.07 -7.93 16 19 C -0.10 -0.97 5.88 -104.95 -0.62 -1.59 16 20 C -0.09 -0.55 9.54 -39.18 -0.37 -0.92 16 21 C -0.09 -0.46 10.03 -39.65 -0.40 -0.85 16 22 C -0.12 -0.71 10.02 -39.44 -0.40 -1.11 16 23 C 0.10 0.89 7.27 -39.45 -0.29 0.60 16 24 F -0.12 -1.20 16.83 2.25 0.04 -1.17 16 25 C -0.03 -0.31 6.36 -39.00 -0.25 -0.56 16 26 Cl -0.01 -0.11 25.68 -51.86 -1.33 -1.45 16 27 C -0.15 -2.84 6.76 -89.23 -0.60 -3.44 16 28 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 29 C 0.15 3.60 6.43 -0.31 0.00 3.59 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.97 7.94 -51.93 -0.41 0.55 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.20 6.44 -40.82 -0.26 2.94 16 36 H 0.14 0.59 6.40 -52.48 -0.34 0.25 16 37 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.14 3.57 5.34 -51.93 -0.28 3.29 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -32.00 352.77 -10.31 -42.31 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.63 Total: 1.01 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.40 Total: -5.32 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.35 Total: -49.46 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.33 Total: -1.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.00 -10.31 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978781478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.824 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds