Wall clock time and date at job start Tue Mar 31 2020 20:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46972 * 119.99851 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.09000 * 117.40540 * 16.12369 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21553 * 119.99940 * 359.97438 * 17 16 15 19 19 C 1.47780 * 119.99751 * 180.02562 * 17 16 15 20 20 C 1.39634 * 120.14491 * 359.72030 * 19 17 16 21 21 C 1.37899 * 119.91525 * 179.76357 * 20 19 17 22 22 C 1.38392 * 120.20681 * 0.51947 * 21 20 19 23 23 C 1.38464 * 120.29257 * 359.73535 * 22 21 20 24 24 F 1.35101 * 119.96241 * 179.97438 * 23 22 21 25 25 C 1.38383 * 120.08223 * 0.02562 * 23 22 21 26 26 Cl 1.73601 * 120.10672 * 180.02562 * 25 23 22 27 27 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 28 28 H 1.09002 * 119.53987 * 248.23147 * 27 13 11 29 29 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 30 30 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 32 32 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 33 33 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 34 34 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 35 35 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.03889 * 0.02562 * 20 19 17 37 37 H 1.07998 * 119.89135 * 180.25292 * 21 20 19 38 38 H 1.08002 * 119.85493 * 179.71928 * 22 21 20 39 39 H 1.08997 * 110.21952 * 101.72307 * 29 9 7 40 40 H 1.09001 * 112.25708 * 338.13628 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3524 -5.2957 -0.7160 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9161 -8.6976 2.0092 19 6 -1.3240 -9.9637 0.1372 20 6 -0.7295 -9.9768 -1.1262 21 6 -0.6622 -11.1532 -1.8425 22 6 -1.1918 -12.3191 -1.3178 23 6 -1.7881 -12.3149 -0.0682 24 9 -2.3034 -13.4568 0.4374 25 6 -1.8578 -11.1422 0.6632 26 17 -2.6046 -11.1363 2.2303 27 6 -0.3710 -3.7838 0.9514 28 1 -0.9345 -3.6104 1.8682 29 6 -0.1793 -2.5892 -0.0071 30 1 -0.4850 0.8400 0.0004 31 1 2.9073 -3.7538 0.3762 32 1 1.8506 -4.1842 -1.0040 33 1 -0.4205 -6.4517 2.1142 34 1 -1.9906 -6.0767 1.3644 35 1 -0.4617 -7.5786 -0.4751 36 1 -0.3190 -9.0675 -1.5400 37 1 -0.1986 -11.1637 -2.8179 38 1 -1.1401 -13.2363 -1.8857 39 1 -0.5204 -2.8478 -1.0095 40 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978781478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:13 Heat of formation + Delta-G solvation = -3.354149 kcal Electronic energy + Delta-G solvation = -25416.308068 eV Core-core repulsion = 21366.094511 eV Total energy + Delta-G solvation = -4050.213556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07992 -41.35218 -40.26082 -39.21315 -37.55361 -36.28455 -35.00528 -32.87794 -32.17820 -31.53102 -28.97146 -28.66664 -26.77934 -24.93845 -23.76474 -22.80783 -22.00159 -21.27008 -20.72783 -19.48366 -18.84720 -17.92446 -17.56197 -17.33148 -16.97024 -16.82160 -16.60200 -16.31949 -15.88677 -15.32136 -15.28755 -15.01806 -14.60891 -14.51234 -14.42273 -14.24615 -13.70455 -13.35755 -13.21061 -13.14565 -12.80385 -12.78086 -12.59080 -12.58184 -12.30821 -12.26248 -11.99551 -11.92125 -11.60824 -10.98060 -10.81378 -10.70405 -10.48658 -10.28160 -9.96594 -9.83193 -8.92250 -7.73664 -5.20420 -0.51155 -0.13622 0.97254 1.48528 1.51403 1.57633 1.68144 1.92553 2.50414 2.51693 2.75387 2.99186 3.32878 3.44904 3.62300 3.66261 3.72667 3.78321 3.90042 4.09935 4.20969 4.29582 4.34364 4.44718 4.57720 4.65264 4.68820 4.76960 4.79205 4.97310 5.00988 5.06249 5.12821 5.20518 5.36496 5.42515 5.47619 5.54513 5.57082 5.83145 6.31435 6.46652 7.05235 7.13069 7.73058 8.47806 9.27110 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.001961 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.234043 B =14276.382347 C =14853.853465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.154 3.846 11 C -0.163 4.163 12 H 0.117 0.883 13 C -0.107 4.107 14 H 0.117 0.883 15 C 0.165 3.835 16 N -0.703 5.703 17 C 0.548 3.452 18 O -0.554 6.554 19 C -0.118 4.118 20 C -0.074 4.074 21 C -0.077 4.077 22 C -0.106 4.106 23 C 0.080 3.920 24 F -0.135 7.135 25 C -0.053 4.053 26 Cl -0.043 7.043 27 C -0.174 4.174 28 H 0.102 0.898 29 C 0.154 3.846 30 H 0.247 0.753 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.180 0.820 39 H 0.007 0.993 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -27.192 -6.192 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.028 3.972 11 C -0.183 4.183 12 H 0.135 0.865 13 C -0.126 4.126 14 H 0.135 0.865 15 C 0.041 3.959 16 N -0.356 5.356 17 C 0.335 3.665 18 O -0.433 6.433 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.095 4.095 22 C -0.124 4.124 23 C 0.060 3.940 24 F -0.113 7.113 25 C -0.081 4.081 26 Cl -0.013 7.013 27 C -0.195 4.195 28 H 0.120 0.880 29 C 0.030 3.970 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.255 0.745 36 H 0.190 0.810 37 H 0.208 0.792 38 H 0.197 0.803 39 H 0.025 0.975 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.018 -26.918 -5.240 27.497 hybrid contribution 0.102 0.935 0.371 1.011 sum -1.916 -25.982 -4.869 26.504 Atomic orbital electron populations 1.69758 1.06181 1.24961 1.59054 1.25585 0.96594 1.00854 1.03333 0.85108 0.77064 0.78791 0.78104 1.20369 1.22101 1.20554 1.19444 0.90902 0.83604 1.41873 0.89943 1.46482 1.02279 1.00616 1.86087 1.21267 0.95600 0.84192 0.96095 1.23950 0.89838 1.02585 1.01904 0.86477 1.22440 0.98743 0.91661 0.99793 0.86474 1.20687 1.00480 0.81041 0.93692 1.45719 1.59766 1.07572 1.22555 1.18315 0.78598 0.83969 0.85667 1.90877 1.44776 1.86045 1.21566 1.19639 1.03681 0.91634 0.97252 1.21832 0.95337 1.01422 0.90714 1.21608 0.96518 0.89720 1.01651 1.21808 0.96041 1.02604 0.91978 1.17616 1.01094 0.80592 0.94676 1.91535 1.84857 1.47496 1.87457 1.21331 1.02166 0.94571 0.90071 1.98425 1.79937 1.98622 1.24347 1.23851 1.01932 0.91500 1.02192 0.87952 1.22278 0.84632 0.96218 0.93901 0.94268 0.92830 0.94536 0.91586 0.91286 0.74539 0.80996 0.79207 0.80284 0.97529 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.78 10.12 21.65 0.22 -55.56 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.98 45.10 29.55 68.60 2.03 47.13 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.23 -12.63 10.42 84.03 0.88 -11.75 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -31.60 3.46 -678.23 -2.35 -33.95 16 10 C 0.15 5.91 7.05 86.53 0.61 6.52 16 11 C -0.16 -5.24 6.74 -9.88 -0.07 -5.30 16 12 H 0.12 3.46 8.12 -2.39 -0.02 3.45 16 13 C -0.11 -2.84 5.38 -10.79 -0.06 -2.89 16 14 H 0.12 2.81 8.04 -2.39 -0.02 2.79 16 15 C 0.16 3.89 5.95 86.38 0.51 4.40 16 16 N -0.70 -13.25 5.51 -466.03 -2.57 -15.82 16 17 C 0.55 12.78 7.77 86.77 0.67 13.46 16 18 O -0.55 -17.48 13.97 -3.88 -0.05 -17.53 16 19 C -0.12 -2.13 5.88 -20.07 -0.12 -2.24 16 20 C -0.07 -0.64 9.54 22.53 0.21 -0.43 16 21 C -0.08 -0.35 10.03 22.23 0.22 -0.13 16 22 C -0.11 -0.83 10.02 22.36 0.22 -0.61 16 23 C 0.08 1.32 7.27 22.36 0.16 1.48 16 24 F -0.13 -2.57 16.83 44.97 0.76 -1.81 16 25 C -0.05 -1.10 6.36 22.65 0.14 -0.96 16 26 Cl -0.04 -1.12 25.68 -2.72 -0.07 -1.19 16 27 C -0.17 -6.37 6.76 -9.90 -0.07 -6.44 16 28 H 0.10 3.72 8.14 -2.39 -0.02 3.71 16 29 C 0.15 7.30 6.43 85.78 0.55 7.85 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.69 7.94 -2.39 -0.02 1.67 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.42 4.97 6.44 -92.71 -0.60 4.37 16 36 H 0.17 0.46 6.40 -2.91 -0.02 0.44 16 37 H 0.19 -0.65 8.06 -2.91 -0.02 -0.68 16 38 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 5.49 5.34 -2.39 -0.01 5.47 16 Total: -1.00 -73.87 352.77 2.81 -71.06 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.50 Total: 8.27 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.35 Total: -0.59 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.70 Total: -105.33 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.76 Total: -1.81 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -73.87 2.81 -71.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978781478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.703 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds