Wall clock time and date at job start Tue Mar 31 2020 20:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00113 * 2 1 4 4 H 1.48497 * 109.47465 * 274.45852 * 3 2 1 5 5 H 1.48505 * 109.47041 * 34.45712 * 3 2 1 6 6 H 1.48500 * 109.47359 * 154.45687 * 3 2 1 7 7 C 1.38807 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00034 * 189.01731 * 7 2 1 9 9 N 1.36937 * 120.00258 * 9.01814 * 7 2 1 10 10 C 1.48150 * 127.83831 * 15.58716 * 9 7 2 11 11 C 1.57699 * 104.67315 * 139.77662 * 10 9 7 12 12 H 1.08998 * 120.32296 * 244.64237 * 11 10 9 13 13 C 1.52997 * 116.10852 * 87.31044 * 11 10 9 14 14 H 1.09004 * 117.40561 * 16.95791 * 13 11 10 15 15 C 1.52998 * 117.43960 * 161.63381 * 13 11 10 16 16 N 1.46499 * 109.47553 * 244.24325 * 15 13 11 17 17 C 1.34777 * 120.00416 * 180.02562 * 16 15 13 18 18 O 1.21561 * 119.99362 * 359.97438 * 17 16 15 19 19 C 1.47768 * 120.00094 * 180.02562 * 17 16 15 20 20 C 1.39606 * 120.14568 * 0.02562 * 19 17 16 21 21 C 1.38121 * 119.83852 * 179.97438 * 20 19 17 22 22 F 1.35109 * 119.93358 * 180.02562 * 21 20 19 23 23 C 1.38620 * 120.13162 * 359.97438 * 21 20 19 24 24 C 1.38238 * 120.29208 * 359.97438 * 23 21 20 25 25 C 1.38153 * 120.15886 * 0.02562 * 24 23 21 26 26 Cl 1.73601 * 120.06574 * 179.97438 * 25 24 23 27 27 C 1.52992 * 60.55549 * 269.29082 * 13 11 10 28 28 H 1.09007 * 119.53517 * 248.23540 * 27 13 11 29 29 C 1.48144 * 127.84054 * 195.59700 * 9 7 2 30 30 H 0.97004 * 119.99797 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.40924 * 259.20441 * 10 9 7 32 32 H 1.09004 * 110.40470 * 21.52217 * 10 9 7 33 33 H 1.09004 * 109.46923 * 124.24307 * 15 13 11 34 34 H 1.08996 * 109.47239 * 4.24897 * 15 13 11 35 35 H 0.97006 * 119.99720 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.08133 * 0.02562 * 20 19 17 37 37 H 1.08001 * 119.85419 * 180.02562 * 23 21 20 38 38 H 1.08002 * 119.92091 * 180.27858 * 24 23 21 39 39 H 1.09003 * 110.41255 * 100.79684 * 29 9 7 40 40 H 1.08997 * 110.40775 * 338.36364 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1009 -1.3958 5 1 1.4980 2.6236 0.7922 6 1 3.5917 1.4148 0.6037 7 6 2.0102 -1.2021 -0.0005 8 1 3.0802 -1.2080 0.1461 9 7 1.3383 -2.3806 -0.1869 10 6 -0.0350 -2.5710 -0.7092 11 6 0.0663 -3.8338 -1.6483 12 1 -0.1103 -3.7385 -2.7197 13 6 -0.1195 -5.1931 -0.9712 14 1 -0.5794 -5.2027 0.0170 15 6 -0.4572 -6.3867 -1.8668 16 7 -1.7913 -6.8889 -1.5289 17 6 -2.3022 -7.9445 -2.1930 18 8 -1.6561 -8.4797 -3.0727 19 6 -3.6481 -8.4507 -1.8525 20 6 -4.3933 -7.8373 -0.8438 21 6 -5.6509 -8.3153 -0.5311 22 9 -6.3740 -7.7229 0.4444 23 6 -6.1730 -9.4010 -1.2169 24 6 -5.4403 -10.0117 -2.2174 25 6 -4.1812 -9.5436 -2.5400 26 17 -3.2628 -10.3128 -3.7964 27 6 1.2848 -4.5976 -1.0896 28 1 2.0159 -5.0713 -1.7449 29 6 1.8195 -3.7545 0.0881 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7317 -2.7498 0.1097 32 1 -0.3453 -1.7012 -1.2883 33 1 0.2782 -7.1764 -1.7123 34 1 -0.4404 -6.0739 -2.9108 35 1 -2.3067 -6.4620 -0.8266 36 1 -3.9878 -6.9907 -0.3099 37 1 -7.1570 -9.7708 -0.9690 38 1 -5.8547 -10.8544 -2.7509 39 1 1.4123 -4.1182 1.0315 40 1 2.9090 -3.7785 0.1089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978806678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:42 Heat of formation + Delta-G solvation = 9.623044 kcal Electronic energy + Delta-G solvation = -25470.416405 eV Core-core repulsion = 21420.765582 eV Total energy + Delta-G solvation = -4049.650823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.38830 -40.52211 -38.99550 -38.33024 -36.67527 -35.07535 -33.48402 -32.10980 -30.77373 -30.70434 -27.49596 -27.01572 -25.25791 -24.21694 -23.03666 -21.16560 -21.01879 -20.04523 -19.30909 -18.61455 -17.30214 -17.04876 -16.84862 -16.40801 -16.16031 -15.76704 -15.39644 -14.95809 -14.78551 -14.32957 -13.97820 -13.89387 -13.72763 -13.42648 -13.04298 -12.93085 -12.75824 -12.69601 -12.11755 -11.87653 -11.61770 -11.48434 -11.27025 -11.11931 -10.86337 -10.68761 -10.26850 -10.13423 -9.83659 -9.81094 -9.77905 -9.48429 -9.14334 -9.11395 -8.96128 -8.67751 -6.90134 -5.82991 -3.17442 0.10397 0.44306 1.77001 2.37930 2.86147 3.19949 3.36392 3.42012 3.43858 3.60169 4.00744 4.09287 4.18149 4.43290 4.47230 4.59445 4.82678 4.94620 5.07055 5.28011 5.29332 5.33886 5.39571 5.41322 5.47386 5.49570 5.73316 5.86394 5.87946 5.91502 6.05781 6.09585 6.25975 6.50884 6.63523 6.68436 6.87776 7.29128 7.31578 7.49724 7.68869 7.98840 8.17900 9.08139 9.70699 10.47621 11.31216 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002214 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.429879 B =12641.969004 C =13769.751798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.186 3.814 11 C -0.169 4.169 12 H 0.106 0.894 13 C -0.156 4.156 14 H 0.103 0.897 15 C 0.156 3.844 16 N -0.715 5.715 17 C 0.551 3.449 18 O -0.512 6.512 19 C -0.096 4.096 20 C -0.111 4.111 21 C 0.099 3.901 22 F -0.129 7.129 23 C -0.119 4.119 24 C -0.091 4.091 25 C 0.000 4.000 26 Cl -0.021 7.021 27 C -0.164 4.164 28 H 0.103 0.897 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.401 0.599 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.025 0.975 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 -21.485 -3.296 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.060 3.940 11 C -0.189 4.189 12 H 0.124 0.876 13 C -0.175 4.175 14 H 0.121 0.879 15 C 0.033 3.967 16 N -0.368 5.368 17 C 0.336 3.664 18 O -0.388 6.388 19 C -0.101 4.101 20 C -0.130 4.130 21 C 0.080 3.920 22 F -0.108 7.108 23 C -0.138 4.138 24 C -0.110 4.110 25 C -0.029 4.029 26 Cl 0.008 6.992 27 C -0.185 4.185 28 H 0.121 0.879 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.465 -21.596 -3.969 25.249 hybrid contribution 0.022 1.107 0.455 1.197 sum -12.443 -20.489 -3.514 24.228 Atomic orbital electron populations 1.69893 1.05064 1.25426 1.55837 1.24900 0.95666 0.98011 1.01723 0.86083 0.78732 0.83247 0.77581 1.21510 1.21661 1.20480 1.19020 0.90833 0.82332 1.43307 0.90522 1.45153 1.13425 1.00014 1.73143 1.21661 0.86702 0.92637 0.93043 1.25103 1.01933 0.92404 0.99479 0.87598 1.22549 1.01121 0.93677 1.00126 0.87922 1.20918 0.82254 0.94861 0.98646 1.45955 1.19423 1.32142 1.39247 1.17908 0.85273 0.80739 0.82476 1.90889 1.60397 1.57333 1.30215 1.19670 0.95977 0.96826 0.97590 1.21335 0.93276 1.00853 0.97558 1.17544 0.90590 0.94406 0.89492 1.91572 1.76857 1.82707 1.59650 1.21314 1.01475 0.95085 0.95965 1.20945 0.92137 1.00585 0.97351 1.21074 0.93439 0.94794 0.93551 1.98438 1.72957 1.78990 1.48794 1.23789 0.89607 1.02240 1.02815 0.87893 1.21165 0.97210 0.85949 0.92946 0.93555 0.95630 0.89358 0.90981 0.91071 0.76347 0.83186 0.83247 0.83185 0.95760 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 10.86 55.49 0.60 -25.84 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.75 29.56 -169.99 -5.03 16.72 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.25 10.35 -15.06 -0.16 -6.41 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -14.96 3.38 -166.73 -0.56 -15.53 16 10 C 0.19 4.32 5.76 -0.57 0.00 4.32 16 11 C -0.17 -3.06 7.03 -87.38 -0.61 -3.68 16 12 H 0.11 1.83 8.12 -51.93 -0.42 1.41 16 13 C -0.16 -2.27 5.34 -90.63 -0.48 -2.76 16 14 H 0.10 1.48 8.04 -51.93 -0.42 1.07 16 15 C 0.16 2.00 5.95 -4.04 -0.02 1.97 16 16 N -0.72 -8.06 5.51 -61.28 -0.34 -8.40 16 17 C 0.55 6.81 7.76 -12.36 -0.10 6.71 16 18 O -0.51 -7.79 13.96 5.31 0.07 -7.72 16 19 C -0.10 -0.98 5.88 -104.95 -0.62 -1.59 16 20 C -0.11 -0.92 9.52 -39.11 -0.37 -1.29 16 21 C 0.10 0.78 7.29 -39.48 -0.29 0.49 16 22 F -0.13 -1.14 17.26 2.25 0.04 -1.10 16 23 C -0.12 -0.73 10.02 -39.44 -0.40 -1.13 16 24 C -0.09 -0.61 9.81 -39.61 -0.39 -1.00 16 25 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 26 Cl -0.02 -0.23 26.02 -51.86 -1.35 -1.58 16 27 C -0.16 -2.81 6.77 -89.23 -0.60 -3.41 16 28 H 0.10 1.62 8.14 -51.92 -0.42 1.19 16 29 C 0.15 3.14 7.04 -2.41 -0.02 3.12 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.32 6.51 -51.93 -0.34 1.99 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 35 H 0.40 3.69 6.44 -40.82 -0.26 3.43 16 36 H 0.15 1.01 6.41 -52.49 -0.34 0.68 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -31.63 354.57 -10.31 -41.94 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.69 Total: 1.31 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.40 Total: -5.15 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.30 Total: -49.77 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.07 Total: -7.72 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.35 Total: -1.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.63 -10.31 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978806678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.561 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds