Wall clock time and date at job start Tue Mar 31 2020 20:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48504 * 109.46960 * 270.00031 * 3 2 1 5 5 H 1.48498 * 109.47101 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.47106 * 150.00385 * 3 2 1 7 7 C 1.38816 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00296 * 189.09913 * 7 2 1 9 9 N 1.36935 * 119.99782 * 9.09473 * 7 2 1 10 10 C 1.48147 * 127.84036 * 15.58064 * 9 7 2 11 11 C 1.54389 * 104.61950 * 140.39282 * 10 9 7 12 12 H 1.09002 * 118.18618 * 244.20562 * 11 10 9 13 13 C 1.52999 * 118.12073 * 87.19057 * 11 10 9 14 14 H 1.09004 * 117.40712 * 16.12841 * 13 11 10 15 15 C 1.52997 * 117.44445 * 160.81098 * 13 11 10 16 16 N 1.46498 * 109.47623 * 244.24359 * 15 13 11 17 17 C 1.34775 * 120.00561 * 179.97438 * 16 15 13 18 18 O 1.21576 * 119.99447 * 359.97438 * 17 16 15 19 19 C 1.47618 * 120.00272 * 180.02562 * 17 16 15 20 20 C 1.39890 * 120.17464 * 270.00008 * 19 17 16 21 21 F 1.35103 * 120.10798 * 0.02562 * 20 19 17 22 22 C 1.38245 * 119.79330 * 180.02562 * 20 19 17 23 23 C 1.38289 * 120.15120 * 0.02562 * 22 20 19 24 24 C 1.38343 * 120.36491 * 359.97438 * 23 22 20 25 25 C 1.38078 * 120.20200 * 359.72064 * 24 23 22 26 26 Cl 1.73602 * 120.07895 * 180.30163 * 25 24 23 27 27 C 1.52995 * 60.55977 * 268.46419 * 13 11 10 28 28 H 1.09003 * 119.54306 * 248.23713 * 27 13 11 29 29 C 1.48141 * 127.83601 * 195.55850 * 9 7 2 30 30 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.40445 * 21.61085 * 10 9 7 32 32 H 1.08994 * 110.50953 * 259.22976 * 10 9 7 33 33 H 1.09005 * 109.46670 * 4.24166 * 15 13 11 34 34 H 1.09000 * 109.47291 * 124.23601 * 15 13 11 35 35 H 0.97001 * 119.99709 * 359.97438 * 16 15 13 36 36 H 1.07998 * 119.92438 * 180.02562 * 22 20 19 37 37 H 1.07995 * 119.81477 * 180.02562 * 23 22 20 38 38 H 1.08000 * 119.89742 * 180.02562 * 24 23 22 39 39 H 1.09008 * 110.41013 * 100.82410 * 29 9 7 40 40 H 1.08998 * 110.41017 * 338.39216 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 0.1474 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0342 -2.5705 -0.7124 11 6 0.0639 -3.8158 -1.6198 12 1 -0.1230 -3.6916 -2.6864 13 6 -0.1181 -5.1923 -0.9773 14 1 -0.5682 -5.2275 0.0148 15 6 -0.4670 -6.3610 -1.9010 16 7 -1.7988 -6.8696 -1.5634 17 6 -2.3188 -7.9056 -2.2510 18 8 -1.6828 -8.4178 -3.1517 19 6 -3.6610 -8.4177 -1.9112 20 6 -3.8061 -9.4333 -0.9603 21 9 -2.7177 -9.9494 -0.3484 22 6 -5.0667 -9.9073 -0.6484 23 6 -6.1815 -9.3802 -1.2744 24 6 -6.0454 -8.3756 -2.2158 25 6 -4.7939 -7.8868 -2.5339 26 17 -4.6274 -6.6207 -3.7100 27 6 1.2863 -4.5965 -1.0937 28 1 2.0099 -5.0538 -1.7684 29 6 1.8197 -3.7545 0.0854 30 1 -0.4850 0.8401 0.0004 31 1 -0.3433 -1.7010 -1.2924 32 1 -0.7332 -2.7496 0.1044 33 1 -0.4599 -6.0204 -2.9364 34 1 0.2682 -7.1558 -1.7750 35 1 -2.3063 -6.4607 -0.8450 36 1 -5.1812 -10.6911 0.0857 37 1 -7.1638 -9.7543 -1.0264 38 1 -6.9212 -7.9691 -2.6997 39 1 1.4117 -4.1194 1.0281 40 1 2.9092 -3.7784 0.1073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978981628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:31 Heat of formation + Delta-G solvation = 0.128039 kcal Electronic energy + Delta-G solvation = -25778.985058 eV Core-core repulsion = 21728.922501 eV Total energy + Delta-G solvation = -4050.062557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.42726 -40.36278 -39.10128 -38.47954 -36.90706 -35.03095 -33.38900 -31.93867 -31.04161 -30.73999 -27.52029 -27.11251 -25.21683 -23.94160 -23.32909 -21.19191 -21.02202 -19.97788 -19.27684 -18.49447 -17.68873 -17.26925 -16.82944 -16.49822 -15.86089 -15.74347 -15.25423 -15.03921 -14.78204 -14.37749 -14.10809 -13.88407 -13.66893 -13.53945 -13.06775 -12.83898 -12.67887 -12.62397 -12.15435 -11.84292 -11.83603 -11.45295 -11.27052 -11.11994 -10.84961 -10.72564 -10.32661 -10.25943 -10.13559 -9.75272 -9.53266 -9.46535 -9.27931 -9.12000 -9.01406 -8.64809 -6.87862 -5.80819 -3.15077 0.28504 0.44055 1.53634 2.28396 2.73278 2.95645 3.37677 3.43032 3.44741 3.61512 4.07834 4.16999 4.32903 4.39483 4.45177 4.56922 4.79518 4.87593 5.19858 5.30247 5.35435 5.36420 5.40983 5.43082 5.49489 5.59567 5.75052 5.88628 5.90847 5.93744 6.06326 6.22626 6.26139 6.53367 6.65358 6.70638 6.91285 7.29049 7.34807 7.52165 7.70912 7.95105 8.19998 9.10150 9.72869 10.49900 11.33457 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002390 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.089267 B =11712.560733 C =12295.072318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.167 4.167 12 H 0.102 0.898 13 C -0.151 4.151 14 H 0.103 0.897 15 C 0.155 3.845 16 N -0.707 5.707 17 C 0.564 3.436 18 O -0.521 6.521 19 C -0.153 4.153 20 C 0.146 3.854 21 F -0.122 7.122 22 C -0.151 4.151 23 C -0.063 4.063 24 C -0.122 4.122 25 C 0.019 3.981 26 Cl -0.035 7.035 27 C -0.164 4.164 28 H 0.105 0.895 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.025 0.975 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 -20.265 -2.635 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.187 4.187 12 H 0.120 0.880 13 C -0.170 4.170 14 H 0.121 0.879 15 C 0.032 3.968 16 N -0.357 5.357 17 C 0.347 3.653 18 O -0.397 6.397 19 C -0.158 4.158 20 C 0.125 3.875 21 F -0.100 7.100 22 C -0.170 4.170 23 C -0.081 4.081 24 C -0.141 4.141 25 C -0.009 4.009 26 Cl -0.005 7.005 27 C -0.184 4.184 28 H 0.123 0.877 29 C 0.028 3.972 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.240 0.760 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.336 -20.211 -3.332 25.002 hybrid contribution 0.353 1.005 0.307 1.108 sum -13.982 -19.206 -3.025 23.948 Atomic orbital electron populations 1.69898 1.05056 1.25393 1.55859 1.24896 0.95654 0.97974 1.01779 0.86107 0.78695 0.83231 0.77653 1.21494 1.21659 1.20536 1.19011 0.90835 0.82379 1.43270 0.90545 1.45205 1.13306 0.99975 1.73279 1.21053 0.86818 0.92825 0.93516 1.24376 1.02216 0.92104 0.99960 0.87989 1.22511 1.00944 0.93647 0.99911 0.87868 1.20943 0.82283 0.95017 0.98562 1.45975 1.19489 1.33229 1.37050 1.17750 0.84670 0.80457 0.82414 1.90835 1.60623 1.58300 1.29905 1.19859 0.94636 1.00514 1.00829 1.17470 0.83879 0.93573 0.92556 1.91588 1.52697 1.85012 1.80697 1.21242 0.90391 1.02556 1.02815 1.21136 0.99044 0.94230 0.93712 1.21134 0.95884 0.97872 0.99183 1.20741 0.93135 0.93085 0.93910 1.98448 1.97994 1.48675 1.55419 1.23850 0.89595 1.02184 1.02820 0.87737 1.21142 0.97215 0.85952 0.92903 0.93582 0.89259 0.95934 0.91008 0.90939 0.76045 0.83324 0.83400 0.83445 0.95768 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.86 55.49 0.60 -26.08 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.91 29.56 -169.99 -5.03 16.89 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -15.18 3.38 -168.86 -0.57 -15.75 16 10 C 0.18 4.36 5.70 -2.41 -0.01 4.35 16 11 C -0.17 -3.12 6.74 -89.22 -0.60 -3.72 16 12 H 0.10 1.84 8.12 -51.93 -0.42 1.42 16 13 C -0.15 -2.32 5.39 -90.62 -0.49 -2.81 16 14 H 0.10 1.57 8.04 -51.93 -0.42 1.15 16 15 C 0.15 2.14 5.95 -4.04 -0.02 2.12 16 16 N -0.71 -9.02 5.55 -61.33 -0.34 -9.36 16 17 C 0.56 7.88 5.95 -12.43 -0.07 7.81 16 18 O -0.52 -9.09 17.11 5.30 0.09 -9.00 16 19 C -0.15 -1.74 5.64 -104.89 -0.59 -2.33 16 20 C 0.15 1.44 7.29 -38.96 -0.28 1.15 16 21 F -0.12 -1.39 16.83 2.25 0.04 -1.35 16 22 C -0.15 -0.98 10.01 -39.56 -0.40 -1.37 16 23 C -0.06 -0.31 10.03 -39.52 -0.40 -0.71 16 24 C -0.12 -0.80 9.81 -39.60 -0.39 -1.19 16 25 C 0.02 0.18 6.35 -39.07 -0.25 -0.06 16 26 Cl -0.03 -0.38 28.04 -51.86 -1.45 -1.83 16 27 C -0.16 -2.89 6.85 -89.22 -0.61 -3.50 16 28 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 29 C 0.15 3.22 7.04 -2.41 -0.02 3.20 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.44 8.39 -40.82 -0.34 4.10 16 36 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 38 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -32.91 361.21 -10.46 -43.37 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.86 Total: 1.47 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -4.38 Total: -3.80 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.31 Total: -51.19 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.45 Total: -1.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.91 -10.46 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978981628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.499 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds