Wall clock time and date at job start Tue Mar 31 2020 20:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48504 * 109.46960 * 270.00031 * 3 2 1 5 5 H 1.48498 * 109.47101 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.47106 * 150.00385 * 3 2 1 7 7 C 1.38816 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00296 * 189.09913 * 7 2 1 9 9 N 1.36935 * 119.99782 * 9.09473 * 7 2 1 10 10 C 1.48147 * 127.84036 * 15.58064 * 9 7 2 11 11 C 1.54389 * 104.61950 * 140.39282 * 10 9 7 12 12 H 1.09002 * 118.18618 * 244.20562 * 11 10 9 13 13 C 1.52999 * 118.12073 * 87.19057 * 11 10 9 14 14 H 1.09004 * 117.40712 * 16.12841 * 13 11 10 15 15 C 1.52997 * 117.44445 * 160.81098 * 13 11 10 16 16 N 1.46498 * 109.47623 * 244.24359 * 15 13 11 17 17 C 1.34775 * 120.00561 * 179.97438 * 16 15 13 18 18 O 1.21576 * 119.99447 * 359.97438 * 17 16 15 19 19 C 1.47618 * 120.00272 * 180.02562 * 17 16 15 20 20 C 1.39890 * 120.17464 * 270.00008 * 19 17 16 21 21 F 1.35103 * 120.10798 * 0.02562 * 20 19 17 22 22 C 1.38245 * 119.79330 * 180.02562 * 20 19 17 23 23 C 1.38289 * 120.15120 * 0.02562 * 22 20 19 24 24 C 1.38343 * 120.36491 * 359.97438 * 23 22 20 25 25 C 1.38078 * 120.20200 * 359.72064 * 24 23 22 26 26 Cl 1.73602 * 120.07895 * 180.30163 * 25 24 23 27 27 C 1.52995 * 60.55977 * 268.46419 * 13 11 10 28 28 H 1.09003 * 119.54306 * 248.23713 * 27 13 11 29 29 C 1.48141 * 127.83601 * 195.55850 * 9 7 2 30 30 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.40445 * 21.61085 * 10 9 7 32 32 H 1.08994 * 110.50953 * 259.22976 * 10 9 7 33 33 H 1.09005 * 109.46670 * 4.24166 * 15 13 11 34 34 H 1.09000 * 109.47291 * 124.23601 * 15 13 11 35 35 H 0.97001 * 119.99709 * 359.97438 * 16 15 13 36 36 H 1.07998 * 119.92438 * 180.02562 * 22 20 19 37 37 H 1.07995 * 119.81477 * 180.02562 * 23 22 20 38 38 H 1.08000 * 119.89742 * 180.02562 * 24 23 22 39 39 H 1.09008 * 110.41013 * 100.82410 * 29 9 7 40 40 H 1.08998 * 110.41017 * 338.39216 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 0.1474 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0342 -2.5705 -0.7124 11 6 0.0639 -3.8158 -1.6198 12 1 -0.1230 -3.6916 -2.6864 13 6 -0.1181 -5.1923 -0.9773 14 1 -0.5682 -5.2275 0.0148 15 6 -0.4670 -6.3610 -1.9010 16 7 -1.7988 -6.8696 -1.5634 17 6 -2.3188 -7.9056 -2.2510 18 8 -1.6828 -8.4178 -3.1517 19 6 -3.6610 -8.4177 -1.9112 20 6 -3.8061 -9.4333 -0.9603 21 9 -2.7177 -9.9494 -0.3484 22 6 -5.0667 -9.9073 -0.6484 23 6 -6.1815 -9.3802 -1.2744 24 6 -6.0454 -8.3756 -2.2158 25 6 -4.7939 -7.8868 -2.5339 26 17 -4.6274 -6.6207 -3.7100 27 6 1.2863 -4.5965 -1.0937 28 1 2.0099 -5.0538 -1.7684 29 6 1.8197 -3.7545 0.0854 30 1 -0.4850 0.8401 0.0004 31 1 -0.3433 -1.7010 -1.2924 32 1 -0.7332 -2.7496 0.1044 33 1 -0.4599 -6.0204 -2.9364 34 1 0.2682 -7.1558 -1.7750 35 1 -2.3063 -6.4607 -0.8450 36 1 -5.1812 -10.6911 0.0857 37 1 -7.1638 -9.7543 -1.0264 38 1 -6.9212 -7.9691 -2.6997 39 1 1.4117 -4.1194 1.0281 40 1 2.9092 -3.7784 0.1073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978981628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:31 Heat of formation + Delta-G solvation = -19.778201 kcal Electronic energy + Delta-G solvation = -25779.848257 eV Core-core repulsion = 21728.922501 eV Total energy + Delta-G solvation = -4050.925757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.17788 -41.32585 -40.43307 -39.47562 -37.63079 -36.43174 -35.06937 -32.99330 -32.29926 -31.60897 -29.05938 -28.79713 -26.83205 -24.86922 -23.94057 -22.89635 -22.09693 -21.35273 -20.85866 -19.35246 -18.84894 -18.45370 -17.97176 -17.53337 -16.89454 -16.71012 -16.43013 -16.10419 -15.98115 -15.77777 -15.29790 -15.04133 -14.72581 -14.64385 -14.44136 -14.34421 -14.11886 -13.38758 -13.23251 -13.19667 -12.92795 -12.74749 -12.74645 -12.50816 -12.36059 -12.22989 -11.99673 -11.95806 -11.76975 -11.40012 -10.97453 -10.71366 -10.61783 -10.20241 -10.18408 -9.89032 -8.91999 -7.92655 -5.28981 -0.33600 -0.13846 0.83706 1.24666 1.45563 1.47620 1.56255 1.87743 2.26911 2.47052 2.69655 2.97355 3.24186 3.39042 3.55660 3.68362 3.72723 3.78257 3.82192 4.10042 4.14477 4.23142 4.25564 4.40934 4.50512 4.59669 4.63038 4.66469 4.84093 4.90486 4.99107 5.00411 5.09319 5.11304 5.31501 5.33260 5.44002 5.51336 5.55934 5.65116 6.16953 6.25814 6.91344 7.00251 7.67194 8.45540 9.20991 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002390 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.089267 B =11712.560733 C =12295.072318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.190 3.810 11 C -0.178 4.178 12 H 0.109 0.891 13 C -0.111 4.111 14 H 0.109 0.891 15 C 0.163 3.837 16 N -0.702 5.702 17 C 0.565 3.435 18 O -0.564 6.564 19 C -0.179 4.179 20 C 0.124 3.876 21 F -0.138 7.138 22 C -0.139 4.139 23 C -0.043 4.043 24 C -0.114 4.114 25 C 0.003 3.997 26 Cl -0.056 7.056 27 C -0.155 4.155 28 H 0.128 0.872 29 C 0.149 3.851 30 H 0.250 0.750 31 H 0.052 0.948 32 H 0.003 0.997 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.178 0.822 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.027 0.973 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 -22.193 -2.154 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.064 3.936 11 C -0.198 4.198 12 H 0.127 0.873 13 C -0.130 4.130 14 H 0.127 0.873 15 C 0.040 3.960 16 N -0.352 5.352 17 C 0.350 3.650 18 O -0.443 6.443 19 C -0.184 4.184 20 C 0.103 3.897 21 F -0.116 7.116 22 C -0.158 4.158 23 C -0.060 4.060 24 C -0.133 4.133 25 C -0.024 4.024 26 Cl -0.027 7.027 27 C -0.175 4.175 28 H 0.146 0.854 29 C 0.024 3.976 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.250 0.750 36 H 0.195 0.805 37 H 0.211 0.789 38 H 0.190 0.810 39 H 0.045 0.955 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.712 -22.160 -2.829 27.312 hybrid contribution 0.700 1.520 0.221 1.688 sum -15.012 -20.640 -2.608 25.655 Atomic orbital electron populations 1.70091 1.06480 1.25714 1.57141 1.25739 0.96529 1.01264 1.02102 0.85062 0.77792 0.78871 0.77502 1.21315 1.21954 1.19168 1.19391 0.91361 0.83676 1.42600 0.90164 1.45522 1.13863 1.01167 1.73876 1.20784 0.85998 0.93666 0.93116 1.24059 1.04519 0.91624 0.99563 0.87257 1.22386 0.98840 0.91869 0.99926 0.87272 1.20782 0.83176 0.94365 0.97723 1.45924 1.19120 1.33046 1.37125 1.18177 0.85499 0.79849 0.81474 1.90797 1.62125 1.59620 1.31734 1.19731 0.93460 1.02252 1.02948 1.17802 0.84783 0.94024 0.93045 1.91543 1.53769 1.85265 1.81023 1.21656 0.89097 1.02383 1.02639 1.21686 1.00486 0.92344 0.91530 1.21542 0.95228 0.97554 0.98943 1.20924 0.94010 0.93360 0.94114 1.98437 1.98118 1.49771 1.56386 1.23795 0.90392 1.01838 1.01494 0.85449 1.21289 0.97830 0.84296 0.94221 0.94125 0.92987 0.97874 0.91515 0.90221 0.74986 0.80465 0.78873 0.80959 0.95509 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.01 10.86 21.65 0.24 -56.77 16 2 C -0.06 -3.57 5.40 84.86 0.46 -3.12 16 3 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.24 -13.65 10.35 84.03 0.87 -12.78 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.62 -32.24 3.38 -688.16 -2.33 -34.57 16 10 C 0.19 9.34 5.70 86.53 0.49 9.83 16 11 C -0.18 -6.66 6.74 -9.88 -0.07 -6.73 16 12 H 0.11 3.95 8.12 -2.39 -0.02 3.93 16 13 C -0.11 -3.29 5.39 -10.80 -0.06 -3.34 16 14 H 0.11 3.17 8.04 -2.39 -0.02 3.15 16 15 C 0.16 4.34 5.95 86.38 0.51 4.85 16 16 N -0.70 -17.61 5.55 -466.20 -2.59 -20.20 16 17 C 0.56 15.84 5.95 86.72 0.52 16.36 16 18 O -0.56 -20.05 17.11 -3.96 -0.07 -20.12 16 19 C -0.18 -3.95 5.64 -20.04 -0.11 -4.06 16 20 C 0.12 2.27 7.29 22.67 0.17 2.43 16 21 F -0.14 -3.06 16.83 44.97 0.76 -2.30 16 22 C -0.14 -1.31 10.01 22.28 0.22 -1.09 16 23 C -0.04 -0.23 10.03 22.31 0.22 -0.01 16 24 C -0.11 -1.13 9.81 22.26 0.22 -0.91 16 25 C 0.00 0.06 6.35 22.60 0.14 0.21 16 26 Cl -0.06 -1.21 28.04 -2.72 -0.08 -1.29 16 27 C -0.16 -5.26 6.85 -9.89 -0.07 -5.33 16 28 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 29 C 0.15 6.13 7.04 86.54 0.61 6.74 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.05 2.92 6.51 -2.39 -0.02 2.91 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.07 1.91 7.94 -2.38 -0.02 1.89 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.41 8.85 8.39 -92.71 -0.78 8.07 16 36 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.19 -0.63 8.06 -2.91 -0.02 -0.65 16 38 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 39 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -75.17 361.21 2.40 -72.77 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.31 Total: 11.68 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 4.13 Total: 3.06 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.68 Total: -111.54 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.07 Total: -20.12 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.76 Total: -2.30 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -75.17 2.40 -72.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978981628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.989 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds