Wall clock time and date at job start Tue Mar 31 2020 20:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.08996 * 117.43816 * 16.10919 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21574 * 120.00274 * 0.02562 * 17 16 15 19 19 C 1.47651 * 119.99806 * 179.97438 * 17 16 15 20 20 C 1.39700 * 120.12744 * 359.72482 * 19 17 16 21 21 C 1.37780 * 119.88917 * 179.76397 * 20 19 17 22 22 C 1.38721 * 120.15394 * 0.51381 * 21 20 19 23 23 F 1.35103 * 119.86462 * 179.76005 * 22 21 20 24 24 C 1.38564 * 120.26479 * 359.73787 * 22 21 20 25 25 C 1.38029 * 120.10142 * 0.02562 * 24 22 21 26 26 Cl 1.73603 * 120.07617 * 180.02562 * 25 24 22 27 27 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 28 28 H 1.09002 * 119.53987 * 248.23147 * 27 13 11 29 29 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 30 30 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 32 32 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 33 33 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 34 34 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 35 35 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 36 36 H 1.07993 * 120.05571 * 0.02562 * 20 19 17 37 37 H 1.08002 * 119.92562 * 180.22669 * 21 20 19 38 38 H 1.08000 * 119.94814 * 180.02562 * 24 22 21 39 39 H 1.08997 * 110.21952 * 101.72307 * 29 9 7 40 40 H 1.09001 * 112.25708 * 338.13628 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3530 -5.2957 -0.7159 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9170 -8.6975 2.0090 19 6 -1.3251 -9.9624 0.1374 20 6 -0.7310 -9.9748 -1.1270 21 6 -0.6649 -11.1501 -1.8430 22 6 -1.1962 -12.3181 -1.3158 23 9 -1.1324 -13.4662 -2.0250 24 6 -1.7916 -12.3120 -0.0646 25 6 -1.8593 -11.1416 0.6641 26 17 -2.6048 -11.1348 2.2319 27 6 -0.3710 -3.7838 0.9514 28 1 -0.9345 -3.6104 1.8682 29 6 -0.1793 -2.5892 -0.0071 30 1 -0.4850 0.8400 0.0004 31 1 2.9073 -3.7538 0.3762 32 1 1.8506 -4.1842 -1.0040 33 1 -0.4205 -6.4517 2.1142 34 1 -1.9906 -6.0767 1.3644 35 1 -0.4617 -7.5786 -0.4751 36 1 -0.3205 -9.0656 -1.5407 37 1 -0.2025 -11.1612 -2.8189 38 1 -2.2032 -13.2243 0.3411 39 1 -0.5204 -2.8478 -1.0095 40 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979036495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:18 Heat of formation + Delta-G solvation = -4.777294 kcal Electronic energy + Delta-G solvation = -25316.368353 eV Core-core repulsion = 21266.093085 eV Total energy + Delta-G solvation = -4050.275269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.10811 -41.34465 -40.26493 -39.21900 -37.48810 -36.26310 -34.99537 -32.85246 -32.12846 -31.80402 -28.93202 -28.64841 -26.69284 -24.73337 -24.05708 -22.79411 -21.97020 -21.22854 -20.72036 -19.36468 -18.85980 -18.52163 -17.90083 -16.85281 -16.84638 -16.62522 -16.35312 -16.24073 -15.89160 -15.51234 -15.24559 -14.91301 -14.59050 -14.55784 -14.46146 -14.27652 -13.98358 -13.78174 -13.33626 -13.16142 -12.83113 -12.57793 -12.50824 -12.43197 -12.26344 -12.23857 -11.96827 -11.89304 -11.61162 -10.99262 -10.81468 -10.69020 -10.47697 -10.22166 -10.10858 -9.80739 -8.92271 -7.74157 -5.20772 -0.57386 -0.09643 0.97937 1.48516 1.49260 1.59241 1.63394 1.99835 2.49316 2.50205 2.77335 3.01084 3.32927 3.46425 3.57108 3.64071 3.70539 3.81388 3.90657 3.97712 4.20534 4.25159 4.31338 4.44730 4.57028 4.65312 4.69363 4.73636 4.79368 4.90361 4.93521 4.97696 5.06544 5.22133 5.37131 5.44114 5.48136 5.50924 5.54852 5.83165 6.31337 6.49539 7.05272 7.16436 7.72773 8.47473 9.27005 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.001982 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.722671 B =14127.187379 C =14926.104367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.153 3.847 11 C -0.163 4.163 12 H 0.118 0.882 13 C -0.108 4.108 14 H 0.116 0.884 15 C 0.165 3.835 16 N -0.706 5.706 17 C 0.550 3.450 18 O -0.553 6.553 19 C -0.153 4.153 20 C -0.033 4.033 21 C -0.145 4.145 22 C 0.135 3.865 23 F -0.130 7.130 24 C -0.159 4.159 25 C 0.024 3.976 26 Cl -0.038 7.038 27 C -0.174 4.174 28 H 0.103 0.897 29 C 0.153 3.847 30 H 0.247 0.753 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.415 0.585 36 H 0.177 0.823 37 H 0.180 0.820 38 H 0.163 0.837 39 H 0.006 0.994 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -27.164 -4.005 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.028 3.972 11 C -0.183 4.183 12 H 0.136 0.864 13 C -0.127 4.127 14 H 0.134 0.866 15 C 0.041 3.959 16 N -0.359 5.359 17 C 0.337 3.663 18 O -0.432 6.432 19 C -0.157 4.157 20 C -0.052 4.052 21 C -0.164 4.164 22 C 0.115 3.885 23 F -0.108 7.108 24 C -0.178 4.178 25 C -0.004 4.004 26 Cl -0.009 7.009 27 C -0.194 4.194 28 H 0.121 0.879 29 C 0.029 3.971 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.253 0.747 36 H 0.194 0.806 37 H 0.197 0.803 38 H 0.181 0.819 39 H 0.024 0.976 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.935 -26.904 -3.106 27.241 hybrid contribution 0.285 0.875 -0.123 0.928 sum -2.651 -26.029 -3.228 26.362 Atomic orbital electron populations 1.69772 1.06179 1.24799 1.59226 1.25580 0.96599 1.00835 1.03413 0.84970 0.78079 0.79427 0.76619 1.19122 1.21987 1.22114 1.19515 0.90901 0.83582 1.41551 0.89930 1.46499 1.02301 1.00629 1.86045 1.21269 0.95628 0.84207 0.96092 1.23946 0.89823 1.02597 1.01898 0.86406 1.22448 0.98737 0.91731 0.99772 0.86603 1.20678 1.00475 0.81030 0.93669 1.45747 1.59927 1.07703 1.22527 1.18260 0.78501 0.83858 0.85664 1.90878 1.44817 1.86030 1.21487 1.19850 1.05715 0.92711 0.97410 1.21488 0.93510 0.99813 0.90386 1.21537 1.01461 0.90212 1.03173 1.17838 0.98140 0.82779 0.89779 1.91563 1.94045 1.47790 1.77410 1.21080 1.03675 0.98817 0.94275 1.20835 0.96899 0.93778 0.88874 1.98438 1.79721 1.98605 1.24102 1.23845 1.01932 0.91479 1.02186 0.87881 1.22279 0.84622 0.96266 0.93901 0.94287 0.92834 0.94614 0.91525 0.91239 0.74695 0.80558 0.80299 0.81919 0.97589 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.78 10.12 21.65 0.22 -55.56 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -12.47 10.42 84.03 0.88 -11.60 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.63 -31.59 3.46 -678.23 -2.35 -33.94 16 10 C 0.15 5.90 7.05 86.53 0.61 6.51 16 11 C -0.16 -5.20 6.74 -9.88 -0.07 -5.27 16 12 H 0.12 3.45 8.12 -2.39 -0.02 3.43 16 13 C -0.11 -2.83 5.38 -10.79 -0.06 -2.89 16 14 H 0.12 2.79 8.04 -2.39 -0.02 2.77 16 15 C 0.17 3.81 5.95 86.38 0.51 4.33 16 16 N -0.71 -12.94 5.51 -466.15 -2.57 -15.51 16 17 C 0.55 12.20 7.76 86.73 0.67 12.87 16 18 O -0.55 -16.51 13.96 -3.95 -0.06 -16.57 16 19 C -0.15 -2.59 5.88 -20.07 -0.12 -2.71 16 20 C -0.03 -0.32 9.53 22.51 0.21 -0.10 16 21 C -0.15 -1.18 10.01 22.28 0.22 -0.96 16 22 C 0.13 1.58 7.31 22.46 0.16 1.75 16 23 F -0.13 -1.66 17.26 44.97 0.78 -0.88 16 24 C -0.16 -2.19 9.79 22.30 0.22 -1.97 16 25 C 0.02 0.44 6.35 22.59 0.14 0.59 16 26 Cl -0.04 -0.85 26.02 -2.72 -0.07 -0.92 16 27 C -0.17 -6.32 6.76 -9.90 -0.07 -6.39 16 28 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 29 C 0.15 7.27 6.43 85.78 0.55 7.82 16 30 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 4.89 6.43 -92.71 -0.60 4.29 16 36 H 0.18 0.59 6.40 -2.91 -0.02 0.57 16 37 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.10 5.48 5.34 -2.39 -0.01 5.47 16 Total: -1.00 -70.23 353.30 2.82 -67.40 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.50 Total: 10.40 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.35 Total: -1.61 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -4.70 Total: -105.01 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.06 Total: -16.57 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.78 Total: -0.88 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.07 Total: -0.92 kcal Total: -70.23 2.82 -67.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979036495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.623 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds