Wall clock time and date at job start Tue Mar 31 2020 21:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48499 * 109.46945 * 85.61075 * 3 2 1 5 5 H 1.48495 * 109.46944 * 325.61069 * 3 2 1 6 6 H 1.48496 * 109.46802 * 205.60684 * 3 2 1 7 7 C 1.38814 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99772 * 39.86547 * 7 2 1 9 9 N 1.36932 * 120.00019 * 219.86432 * 7 2 1 10 10 C 1.43461 * 118.94187 * 184.31578 * 9 7 2 11 11 C 1.53798 * 107.95531 * 273.60968 * 10 9 7 12 12 C 1.47144 * 111.84169 * 281.66436 * 11 10 9 13 13 N 1.48217 * 110.34000 * 58.29459 * 12 11 10 14 14 C 1.34781 * 119.96265 * 102.51741 * 13 12 11 15 15 O 1.21770 * 120.00276 * 5.03297 * 14 13 12 16 16 C 1.41716 * 119.99434 * 185.03708 * 14 13 12 17 17 S 1.75657 * 125.10265 * 7.66821 * 16 14 13 18 18 C 1.75564 * 91.21239 * 179.97438 * 17 16 14 19 19 C 1.34209 * 110.67370 * 359.97438 * 18 17 16 20 20 C 1.37153 * 125.09811 * 187.36725 * 16 14 13 21 21 O 1.37649 * 124.48389 * 0.83193 * 20 16 14 22 22 C 1.43385 * 114.57165 * 162.92137 * 21 20 16 23 23 C 1.53216 * 109.13636 * 46.28996 * 22 21 20 24 24 O 1.38247 * 124.13840 * 180.12360 * 19 18 17 25 25 C 1.43617 * 120.06465 * 282.49357 * 13 12 11 26 26 C 1.48859 * 118.93860 * 4.04059 * 9 7 2 27 27 H 0.96993 * 119.99954 * 185.00988 * 1 2 3 28 28 H 1.08996 * 109.76369 * 33.21917 * 10 9 7 29 29 H 1.08999 * 109.76342 * 153.94489 * 10 9 7 30 30 H 1.08994 * 109.00853 * 42.27172 * 11 10 9 31 31 H 1.08997 * 109.00475 * 161.05691 * 11 10 9 32 32 H 1.08997 * 109.32889 * 178.56907 * 12 11 10 33 33 H 1.09005 * 109.32458 * 298.21299 * 12 11 10 34 34 H 1.07991 * 124.66373 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.52500 * 286.39243 * 22 21 20 36 36 H 1.08999 * 109.57865 * 166.22303 * 22 21 20 37 37 H 1.09002 * 109.51922 * 177.84306 * 23 22 21 38 38 H 1.09001 * 109.57784 * 57.68679 * 23 22 21 39 39 H 1.09003 * 108.87715 * 211.44840 * 25 13 12 40 40 H 1.09008 * 108.87458 * 329.98411 * 25 13 12 41 41 H 1.09004 * 109.48133 * 260.63145 * 26 9 7 42 42 H 1.09005 * 109.48016 * 20.65752 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4050 2.0999 1.3960 5 1 1.4972 2.6240 -0.7908 6 1 3.5912 1.4150 -0.6051 7 6 2.0103 -1.2022 -0.0005 8 1 1.6584 -2.0285 -0.6005 9 7 3.1409 -1.3404 0.7595 10 6 3.8924 -2.5592 0.6706 11 6 3.2834 -3.5652 1.6618 12 6 3.7059 -3.2950 3.0451 13 7 3.3154 -1.9220 3.4442 14 6 2.2417 -1.7308 4.2361 15 8 1.6476 -2.6882 4.6980 16 6 1.8041 -0.4156 4.5310 17 16 2.4342 1.0482 3.7921 18 6 1.3420 2.0422 4.7414 19 6 0.5797 1.2789 5.5399 20 6 0.8210 -0.0950 5.4320 21 8 0.1303 -1.0124 6.1910 22 6 -0.5600 -0.4552 7.3175 23 6 -1.3190 0.7988 6.8715 24 8 -0.3783 1.7754 6.4041 25 6 4.0804 -0.7952 2.9883 26 6 3.5539 -0.2188 1.6468 27 1 -0.4850 -0.8368 0.0734 28 1 3.8313 -2.9568 -0.3424 29 1 4.9340 -2.3696 0.9299 30 1 2.1965 -3.5062 1.6046 31 1 3.5979 -4.5713 1.3846 32 1 3.2322 -4.0135 3.7139 33 1 4.7890 -3.3945 3.1174 34 1 1.2899 3.1196 4.6894 35 1 0.1604 -0.1892 8.0911 36 1 -1.2650 -1.1868 7.7123 37 1 -1.8771 1.2059 7.7147 38 1 -2.0093 0.5415 6.0681 39 1 4.0433 -0.0135 3.7470 40 1 5.1167 -1.1046 2.8517 41 1 4.3412 0.3578 1.1612 42 1 2.6969 0.4266 1.8398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983585852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:11 Heat of formation + Delta-G solvation = -5.209991 kcal Electronic energy + Delta-G solvation = -29338.753410 eV Core-core repulsion = 25413.963390 eV Total energy + Delta-G solvation = -3924.790020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85226 -39.81131 -37.29734 -36.74996 -35.29946 -34.34160 -33.14585 -31.44964 -29.80034 -29.36160 -27.83455 -26.05013 -24.59917 -23.60004 -23.22333 -22.23488 -20.06025 -19.70792 -19.15191 -18.26295 -17.40044 -17.09937 -16.68552 -16.25772 -15.65070 -15.35297 -15.25048 -15.04438 -14.68098 -14.28352 -14.11962 -13.95831 -13.75687 -13.46586 -13.18799 -12.98143 -12.81926 -12.64236 -12.38941 -12.08589 -11.76421 -11.56873 -11.16249 -11.04780 -10.67929 -10.52602 -10.41258 -10.26604 -10.23555 -9.98007 -9.87327 -9.49258 -9.36967 -8.39424 -8.28934 -8.08542 -7.47799 -7.08792 -6.40370 -3.08290 0.72084 1.68497 1.95215 2.45412 3.29672 3.34026 3.39536 3.52241 3.60268 3.64707 3.76895 4.22785 4.59891 4.63327 4.76975 4.83878 4.86836 5.04218 5.26570 5.28250 5.36554 5.44735 5.45771 5.53300 5.60009 5.68697 5.71470 5.80236 5.87548 6.03316 6.20397 6.26105 6.32485 6.37311 6.50021 6.68602 6.76621 6.90835 7.12877 7.24628 7.82212 8.00174 8.39968 8.63411 9.02167 9.71247 10.13335 11.05250 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.006254 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.889619 B = 4476.292050 C = 5560.432180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C -0.005 4.005 3 Si 1.013 2.987 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.287 1.287 7 C -0.367 4.367 8 H 0.076 0.924 9 N -0.591 5.591 10 C 0.165 3.835 11 C -0.170 4.170 12 C 0.134 3.866 13 N -0.588 5.588 14 C 0.600 3.400 15 O -0.531 6.531 16 C -0.283 4.283 17 S 0.281 5.719 18 C -0.254 4.254 19 C 0.025 3.975 20 C 0.124 3.876 21 O -0.263 6.263 22 C 0.014 3.986 23 C 0.018 3.982 24 O -0.297 6.297 25 C 0.075 3.925 26 C 0.089 3.911 27 H 0.267 0.733 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.172 0.828 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 1.870 12.917 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.208 4.208 3 Si 0.844 3.156 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.214 1.214 7 C -0.494 4.494 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.036 3.964 11 C -0.211 4.211 12 C 0.012 3.988 13 N -0.320 5.320 14 C 0.390 3.610 15 O -0.410 6.410 16 C -0.403 4.403 17 S 0.548 5.452 18 C -0.391 4.391 19 C -0.031 4.031 20 C 0.062 3.938 21 O -0.176 6.176 22 C -0.062 4.062 23 C -0.059 4.059 24 O -0.213 6.213 25 C -0.054 4.054 26 C -0.039 4.039 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.190 0.810 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.558 3.282 12.030 14.089 hybrid contribution -1.181 -1.687 1.003 2.291 sum 5.377 1.595 13.033 14.188 Atomic orbital electron populations 1.70848 1.06987 1.29641 1.44872 1.25642 0.95729 1.00460 0.99019 0.84756 0.76084 0.78477 0.76240 1.21157 1.22544 1.21382 1.20093 1.01448 1.00627 1.27262 0.90650 1.43908 1.28939 1.12227 1.46288 1.20283 0.92856 0.86525 0.96704 1.21841 1.03823 0.99489 0.95951 1.20567 0.98831 0.82468 0.96890 1.47149 1.28864 1.07279 1.48671 1.15487 0.79943 0.86963 0.78595 1.90798 1.55320 1.41797 1.53093 1.22594 1.07890 0.99703 1.10137 1.85414 1.33535 0.91026 1.35191 1.25938 1.05674 1.05686 1.01766 1.18145 0.96483 0.90206 0.98238 1.18740 0.93081 0.87431 0.94541 1.87157 1.62170 1.30230 1.38055 1.23646 0.97097 0.97196 0.88285 1.23571 0.91264 0.89757 1.01300 1.87027 1.39888 1.34193 1.60194 1.22278 0.96702 0.89041 0.97396 1.22996 0.99545 0.91901 0.89480 0.92293 0.93208 0.94585 0.90848 0.92341 0.89939 0.91895 0.81047 0.90717 0.86104 0.86271 0.90464 0.90498 0.89744 0.93887 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.70 55.49 0.76 -26.22 16 2 C 0.00 -0.14 5.00 -17.43 -0.09 -0.22 16 3 Si 1.01 24.19 24.73 -169.99 -4.20 19.99 16 4 H -0.28 -5.89 5.19 56.52 0.29 -5.59 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -6.58 6.91 56.52 0.39 -6.19 16 7 C -0.37 -10.05 9.52 -15.06 -0.14 -10.19 16 8 H 0.08 2.22 8.05 -52.48 -0.42 1.80 16 9 N -0.59 -13.61 2.51 -171.78 -0.43 -14.05 16 10 C 0.16 3.16 5.63 -5.24 -0.03 3.13 16 11 C -0.17 -3.10 5.64 -29.13 -0.16 -3.26 16 12 C 0.13 2.27 5.73 -5.91 -0.03 2.23 16 13 N -0.59 -11.20 2.46 -179.81 -0.44 -11.64 16 14 C 0.60 13.04 7.46 -14.93 -0.11 12.92 16 15 O -0.53 -12.84 15.31 -11.54 -0.18 -13.01 16 16 C -0.28 -5.79 6.01 -38.65 -0.23 -6.02 16 17 S 0.28 4.99 13.80 -107.50 -1.48 3.51 16 18 C -0.25 -4.23 11.17 29.31 0.33 -3.90 16 19 C 0.02 0.44 6.55 -40.38 -0.26 0.17 16 20 C 0.12 2.42 6.57 -39.35 -0.26 2.16 16 21 O -0.26 -4.91 9.63 -48.93 -0.47 -5.38 16 22 C 0.01 0.18 7.14 37.27 0.27 0.44 16 23 C 0.02 0.21 7.14 37.27 0.27 0.47 16 24 O -0.30 -4.61 10.77 -35.42 -0.38 -4.99 16 25 C 0.07 1.26 4.72 -4.40 -0.02 1.24 16 26 C 0.09 1.80 3.93 -1.56 -0.01 1.80 16 27 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 28 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 29 H 0.04 0.60 7.59 -51.93 -0.39 0.20 16 30 H 0.07 1.67 7.91 -51.93 -0.41 1.26 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.45 7.08 -51.93 -0.37 1.09 16 33 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.19 4.47 -21.86 -0.10 1.10 16 40 H 0.08 1.17 7.72 -51.92 -0.40 0.77 16 41 H 0.04 0.82 7.01 -51.93 -0.36 0.46 16 42 H 0.09 2.05 1.26 -27.68 -0.03 2.02 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -34.99 328.98 -7.50 -42.49 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.13 Total: 3.38 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.49 Total: 0.98 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.11 Total: -51.91 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.03 Total: -23.39 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.20 Total: 19.99 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.48 Total: 3.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.99 -7.50 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983585852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.276 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds