Wall clock time and date at job start Tue Mar 31 2020 21:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48499 * 109.46945 * 85.61075 * 3 2 1 5 5 H 1.48495 * 109.46944 * 325.61069 * 3 2 1 6 6 H 1.48496 * 109.46802 * 205.60684 * 3 2 1 7 7 C 1.38814 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99772 * 39.86547 * 7 2 1 9 9 N 1.36932 * 120.00019 * 219.86432 * 7 2 1 10 10 C 1.43461 * 118.94187 * 184.31578 * 9 7 2 11 11 C 1.53798 * 107.95531 * 273.60968 * 10 9 7 12 12 C 1.47144 * 111.84169 * 281.66436 * 11 10 9 13 13 N 1.48217 * 110.34000 * 58.29459 * 12 11 10 14 14 C 1.34781 * 119.96265 * 102.51741 * 13 12 11 15 15 O 1.21770 * 120.00276 * 5.03297 * 14 13 12 16 16 C 1.41716 * 119.99434 * 185.03708 * 14 13 12 17 17 S 1.75657 * 125.10265 * 7.66821 * 16 14 13 18 18 C 1.75564 * 91.21239 * 179.97438 * 17 16 14 19 19 C 1.34209 * 110.67370 * 359.97438 * 18 17 16 20 20 C 1.37153 * 125.09811 * 187.36725 * 16 14 13 21 21 O 1.37649 * 124.48389 * 0.83193 * 20 16 14 22 22 C 1.43385 * 114.57165 * 162.92137 * 21 20 16 23 23 C 1.53216 * 109.13636 * 46.28996 * 22 21 20 24 24 O 1.38247 * 124.13840 * 180.12360 * 19 18 17 25 25 C 1.43617 * 120.06465 * 282.49357 * 13 12 11 26 26 C 1.48859 * 118.93860 * 4.04059 * 9 7 2 27 27 H 0.96993 * 119.99954 * 185.00988 * 1 2 3 28 28 H 1.08996 * 109.76369 * 33.21917 * 10 9 7 29 29 H 1.08999 * 109.76342 * 153.94489 * 10 9 7 30 30 H 1.08994 * 109.00853 * 42.27172 * 11 10 9 31 31 H 1.08997 * 109.00475 * 161.05691 * 11 10 9 32 32 H 1.08997 * 109.32889 * 178.56907 * 12 11 10 33 33 H 1.09005 * 109.32458 * 298.21299 * 12 11 10 34 34 H 1.07991 * 124.66373 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.52500 * 286.39243 * 22 21 20 36 36 H 1.08999 * 109.57865 * 166.22303 * 22 21 20 37 37 H 1.09002 * 109.51922 * 177.84306 * 23 22 21 38 38 H 1.09001 * 109.57784 * 57.68679 * 23 22 21 39 39 H 1.09003 * 108.87715 * 211.44840 * 25 13 12 40 40 H 1.09008 * 108.87458 * 329.98411 * 25 13 12 41 41 H 1.09004 * 109.48133 * 260.63145 * 26 9 7 42 42 H 1.09005 * 109.48016 * 20.65752 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4050 2.0999 1.3960 5 1 1.4972 2.6240 -0.7908 6 1 3.5912 1.4150 -0.6051 7 6 2.0103 -1.2022 -0.0005 8 1 1.6584 -2.0285 -0.6005 9 7 3.1409 -1.3404 0.7595 10 6 3.8924 -2.5592 0.6706 11 6 3.2834 -3.5652 1.6618 12 6 3.7059 -3.2950 3.0451 13 7 3.3154 -1.9220 3.4442 14 6 2.2417 -1.7308 4.2361 15 8 1.6476 -2.6882 4.6980 16 6 1.8041 -0.4156 4.5310 17 16 2.4342 1.0482 3.7921 18 6 1.3420 2.0422 4.7414 19 6 0.5797 1.2789 5.5399 20 6 0.8210 -0.0950 5.4320 21 8 0.1303 -1.0124 6.1910 22 6 -0.5600 -0.4552 7.3175 23 6 -1.3190 0.7988 6.8715 24 8 -0.3783 1.7754 6.4041 25 6 4.0804 -0.7952 2.9883 26 6 3.5539 -0.2188 1.6468 27 1 -0.4850 -0.8368 0.0734 28 1 3.8313 -2.9568 -0.3424 29 1 4.9340 -2.3696 0.9299 30 1 2.1965 -3.5062 1.6046 31 1 3.5979 -4.5713 1.3846 32 1 3.2322 -4.0135 3.7139 33 1 4.7890 -3.3945 3.1174 34 1 1.2899 3.1196 4.6894 35 1 0.1604 -0.1892 8.0911 36 1 -1.2650 -1.1868 7.7123 37 1 -1.8771 1.2059 7.7147 38 1 -2.0093 0.5415 6.0681 39 1 4.0433 -0.0135 3.7470 40 1 5.1167 -1.1046 2.8517 41 1 4.3412 0.3578 1.1612 42 1 2.6969 0.4266 1.8398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000983585852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:10 Heat of formation + Delta-G solvation = -31.228417 kcal Electronic energy + Delta-G solvation = -29339.881654 eV Core-core repulsion = 25413.963390 eV Total energy + Delta-G solvation = -3925.918264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.12366 -41.28043 -38.87409 -38.03617 -36.61452 -36.06030 -34.68096 -33.40045 -30.93086 -30.67914 -29.44018 -27.62544 -26.01414 -25.04121 -24.72067 -23.67677 -21.69493 -21.14051 -20.41813 -19.78489 -19.09418 -18.48823 -18.10600 -17.62974 -17.06671 -16.91679 -16.71452 -16.44580 -15.88248 -15.63016 -15.46632 -15.40411 -15.37012 -15.11572 -14.62625 -14.53913 -14.18273 -14.05880 -13.83398 -13.62226 -13.31397 -13.13292 -12.73886 -12.12143 -12.04690 -11.95215 -11.91104 -11.82809 -11.71513 -11.63482 -11.56865 -11.23590 -11.04090 -10.34368 -9.85517 -9.48933 -9.08360 -8.74360 -8.62567 -5.20319 -0.68680 0.29480 0.63880 1.10242 1.44950 1.61496 1.76984 1.90710 2.10722 2.27991 2.49194 2.62366 2.95664 3.08441 3.42584 3.51309 3.71326 3.90203 3.95144 3.99713 4.03161 4.13217 4.23631 4.33829 4.39672 4.41011 4.48692 4.51156 4.56373 4.62354 4.73873 4.84547 4.88678 4.92199 5.00884 5.17689 5.40576 5.59686 5.64871 5.84998 6.00511 6.22196 6.34820 6.95513 7.08674 7.79019 8.09138 8.83255 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.006254 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.889619 B = 4476.292050 C = 5560.432180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.062 4.062 3 Si 1.060 2.940 4 H -0.239 1.239 5 H -0.315 1.315 6 H -0.263 1.263 7 C -0.355 4.355 8 H 0.031 0.969 9 N -0.606 5.606 10 C 0.160 3.840 11 C -0.157 4.157 12 C 0.130 3.870 13 N -0.588 5.588 14 C 0.588 3.412 15 O -0.575 6.575 16 C -0.327 4.327 17 S 0.297 5.703 18 C -0.245 4.245 19 C 0.012 3.988 20 C 0.117 3.883 21 O -0.297 6.297 22 C 0.005 3.995 23 C 0.014 3.986 24 O -0.301 6.301 25 C 0.073 3.927 26 C 0.075 3.925 27 H 0.243 0.757 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.011 0.989 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.203 0.797 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 3.799 14.683 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.259 4.259 3 Si 0.886 3.114 4 H -0.165 1.165 5 H -0.244 1.244 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.049 0.951 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.198 4.198 12 C 0.010 3.990 13 N -0.318 5.318 14 C 0.380 3.620 15 O -0.458 6.458 16 C -0.447 4.447 17 S 0.564 5.436 18 C -0.381 4.381 19 C -0.043 4.043 20 C 0.055 3.945 21 O -0.211 6.211 22 C -0.070 4.070 23 C -0.062 4.062 24 O -0.218 6.218 25 C -0.055 4.055 26 C -0.051 4.051 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.030 0.970 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.220 0.780 35 H 0.108 0.892 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.149 0.851 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.617 5.195 13.818 17.619 hybrid contribution -2.218 -2.426 0.499 3.325 sum 7.400 2.768 14.317 16.352 Atomic orbital electron populations 1.71013 1.08442 1.28024 1.49454 1.26955 0.95511 1.04286 0.99109 0.84150 0.75308 0.73433 0.78540 1.16530 1.24375 1.18810 1.19915 1.02776 0.99072 1.26640 0.95107 1.43955 1.28344 1.14259 1.46321 1.20493 0.94747 0.85118 0.96371 1.21705 0.99719 1.01293 0.97069 1.20743 1.01613 0.81485 0.95198 1.47328 1.28148 1.08696 1.47658 1.15880 0.80261 0.87176 0.78724 1.90747 1.56826 1.43149 1.55107 1.22735 1.09738 1.00268 1.11933 1.84926 1.33660 0.89726 1.35297 1.26329 1.04351 1.07051 1.00352 1.18232 0.97486 0.89477 0.99153 1.19121 0.92665 0.88500 0.94236 1.87102 1.62471 1.31856 1.39639 1.24088 0.97766 0.98332 0.86805 1.23895 0.90462 0.89380 1.02440 1.87016 1.39859 1.35167 1.59709 1.22420 0.98233 0.88998 0.95800 1.23258 0.99776 0.91313 0.90772 0.94884 0.94375 0.89992 0.96985 0.89242 0.91303 0.86758 0.77974 0.89189 0.83110 0.81503 0.91658 0.88689 0.85133 0.91003 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.45 13.70 21.65 0.30 -59.15 16 2 C -0.06 -3.59 5.00 84.86 0.42 -3.16 16 3 Si 1.06 48.18 24.73 68.60 1.70 49.88 16 4 H -0.24 -9.02 5.19 99.48 0.52 -8.50 16 5 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.26 -10.85 6.91 99.48 0.69 -10.16 16 7 C -0.36 -20.09 9.52 84.03 0.80 -19.29 16 8 H 0.03 1.95 8.05 -2.91 -0.02 1.93 16 9 N -0.61 -27.25 2.51 -697.39 -1.75 -29.01 16 10 C 0.16 5.83 5.63 87.21 0.49 6.32 16 11 C -0.16 -5.63 5.64 29.04 0.16 -5.47 16 12 C 0.13 4.17 5.73 84.23 0.48 4.65 16 13 N -0.59 -21.52 2.46 -840.98 -2.07 -23.59 16 14 C 0.59 25.92 7.46 85.10 0.63 26.55 16 15 O -0.58 -29.07 15.31 11.36 0.17 -28.90 16 16 C -0.33 -13.38 6.01 22.87 0.14 -13.24 16 17 S 0.30 9.88 13.80 -56.49 -0.78 9.10 16 18 C -0.24 -7.56 11.17 66.90 0.75 -6.81 16 19 C 0.01 0.40 6.55 21.75 0.14 0.55 16 20 C 0.12 4.61 6.57 22.42 0.15 4.76 16 21 O -0.30 -11.28 9.63 -90.67 -0.87 -12.15 16 22 C 0.00 0.12 7.14 72.05 0.51 0.63 16 23 C 0.01 0.30 7.14 72.05 0.51 0.81 16 24 O -0.30 -8.77 10.77 -113.05 -1.22 -9.99 16 25 C 0.07 2.19 4.72 87.67 0.41 2.61 16 26 C 0.08 2.83 3.93 86.68 0.34 3.17 16 27 H 0.24 16.19 8.73 -92.71 -0.81 15.38 16 28 H 0.04 1.46 8.02 -2.39 -0.02 1.45 16 29 H 0.08 2.29 7.59 -2.39 -0.02 2.27 16 30 H 0.01 0.55 7.91 -2.39 -0.02 0.53 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.07 2.41 7.08 -2.39 -0.02 2.40 16 33 H 0.11 2.54 8.05 -2.38 -0.02 2.52 16 34 H 0.20 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.17 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 2.59 4.47 -21.50 -0.10 2.49 16 40 H 0.13 2.76 7.72 -2.38 -0.02 2.75 16 41 H 0.07 2.34 7.01 -2.39 -0.02 2.33 16 42 H 0.07 3.09 1.26 -17.80 -0.02 3.06 16 Total: -1.00 -84.62 328.98 2.14 -82.48 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.71 Total: 19.26 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.95 Total: 2.07 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -3.52 Total: -111.75 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -1.92 Total: -51.04 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.70 Total: 49.88 kcal Atomic # 16 Polarization: 9.88 SS G_CDS: -0.78 Total: 9.10 kcal Total: -84.62 2.14 -82.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983585852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.253 kcal (2) G-P(sol) polarization free energy of solvation -84.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds