Wall clock time and date at job start Tue Mar 31 2020 20:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00543 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00075 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99986 * 3 2 1 7 7 C 1.38818 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99452 * 164.52248 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.51716 * 7 2 1 10 10 C 1.47012 * 121.37477 * 335.96978 * 9 7 2 11 11 C 1.50316 * 109.16472 * 222.96977 * 10 9 7 12 12 C 1.29454 * 123.65460 * 349.02174 * 11 10 9 13 13 C 1.50701 * 117.69515 * 180.85752 * 12 11 10 14 14 N 1.46498 * 109.46909 * 95.00396 * 13 12 11 15 15 C 1.34777 * 120.00095 * 180.02562 * 14 13 12 16 16 O 1.21575 * 119.99684 * 359.97438 * 15 14 13 17 17 C 1.47690 * 120.00202 * 179.97438 * 15 14 13 18 18 C 1.39654 * 120.15871 * 359.72421 * 17 15 14 19 19 C 1.37976 * 119.86157 * 179.71966 * 18 17 15 20 20 Cl 1.73602 * 119.90378 * 180.27515 * 19 18 17 21 21 C 1.38562 * 120.19049 * 0.55701 * 19 18 17 22 22 C 1.38191 * 120.32608 * 359.71634 * 21 19 18 23 23 C 1.38315 * 120.13452 * 0.02562 * 22 21 19 24 24 F 1.35103 * 120.10084 * 179.97438 * 23 22 21 25 25 C 1.49972 * 124.60958 * 1.14389 * 12 11 10 26 26 C 1.47334 * 121.37472 * 155.99900 * 9 7 2 27 27 H 0.97005 * 119.99607 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.51643 * 103.06283 * 10 9 7 29 29 H 1.09004 * 109.51808 * 342.88077 * 10 9 7 30 30 H 1.08004 * 118.16918 * 169.00040 * 11 10 9 31 31 H 1.08997 * 109.47020 * 215.00431 * 13 12 11 32 32 H 1.09001 * 109.47326 * 335.00184 * 13 12 11 33 33 H 0.96999 * 119.99901 * 359.97438 * 14 13 12 34 34 H 1.07994 * 120.06957 * 359.97438 * 18 17 15 35 35 H 1.08001 * 119.83458 * 179.70022 * 21 19 18 36 36 H 1.08002 * 119.93426 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.31400 * 101.00822 * 25 12 11 38 38 H 1.08997 * 109.31188 * 220.43728 * 25 12 11 39 39 H 1.09009 * 109.77415 * 237.78568 * 26 9 7 40 40 H 1.09001 * 109.77952 * 358.58972 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0607 -1.2193 -0.2491 9 7 1.3626 -2.3665 0.3176 10 6 0.1442 -2.3650 1.1402 11 6 0.2243 -3.4820 2.1428 12 6 1.1199 -4.4161 2.1062 13 6 1.0634 -5.4827 3.1693 14 7 0.3196 -6.6385 2.6623 15 6 0.1400 -7.7206 3.4453 16 8 0.5957 -7.7378 4.5723 17 6 -0.6104 -8.8856 2.9344 18 6 -1.1402 -8.8671 1.6424 19 6 -1.8352 -9.9611 1.1692 20 17 -2.4882 -9.9422 -0.4392 21 6 -2.0185 -11.0725 1.9761 22 6 -1.5024 -11.0970 3.2578 23 6 -0.7990 -10.0098 3.7440 24 9 -0.2952 -10.0342 4.9973 25 6 2.2135 -4.5080 1.0841 26 6 1.8587 -3.6723 -0.1509 27 1 -0.4850 0.8401 0.0004 28 1 -0.7268 -2.5109 0.5011 29 1 0.0584 -1.4121 1.6624 30 1 -0.5058 -3.5065 2.9383 31 1 2.0762 -5.7888 3.4311 32 1 0.5631 -5.0881 4.0537 33 1 -0.0444 -6.6246 1.7632 34 1 -1.0028 -8.0000 1.0135 35 1 -2.5676 -11.9238 1.6016 36 1 -1.6494 -11.9664 3.8815 37 1 3.1438 -4.1408 1.5174 38 1 2.3432 -5.5488 0.7876 39 1 1.0843 -4.1745 -0.7309 40 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000921354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:18 Heat of formation + Delta-G solvation = -20.090614 kcal Electronic energy + Delta-G solvation = -25857.476343 eV Core-core repulsion = 21806.537039 eV Total energy + Delta-G solvation = -4050.939304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.21224 -40.36769 -38.88999 -37.76717 -36.82526 -35.07350 -33.16580 -32.00497 -30.80773 -30.71347 -29.75337 -27.11208 -24.91670 -23.96843 -23.02275 -22.72549 -21.19295 -20.83474 -18.81056 -17.73914 -17.52517 -17.14730 -16.19338 -16.13519 -15.70141 -15.59698 -15.23873 -14.98396 -14.86883 -14.13979 -13.84577 -13.82687 -13.78365 -13.58926 -13.42884 -13.04440 -12.96882 -12.32586 -12.13098 -12.04711 -11.67782 -11.61766 -11.49104 -11.41452 -10.95436 -10.75644 -10.46954 -10.36481 -10.14214 -9.87110 -9.80770 -9.65266 -9.16296 -9.01346 -8.72644 -8.12828 -6.79239 -5.84001 -3.22743 0.13038 0.45444 1.58386 2.39453 2.46137 3.21215 3.28810 3.35633 3.42821 3.45160 3.66362 4.03752 4.16590 4.46179 4.49742 4.62462 4.92480 5.01673 5.13764 5.29323 5.35473 5.37367 5.40025 5.50219 5.53998 5.75676 5.87314 6.01386 6.06813 6.10762 6.27202 6.31546 6.45846 6.67816 6.81592 7.10243 7.19479 7.25414 7.39942 7.67890 7.77337 8.03189 8.33666 9.15169 9.77884 10.35523 11.26538 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.002467 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.310133 B =11348.420380 C =12501.075746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.121 4.121 12 C -0.169 4.169 13 C 0.158 3.842 14 N -0.711 5.711 15 C 0.554 3.446 16 O -0.526 6.526 17 C -0.157 4.157 18 C -0.048 4.048 19 C -0.057 4.057 20 Cl -0.052 7.052 21 C -0.057 4.057 22 C -0.152 4.152 23 C 0.164 3.836 24 F -0.109 7.109 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 -23.357 3.040 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.036 3.964 14 N -0.363 5.363 15 C 0.339 3.661 16 O -0.403 6.403 17 C -0.161 4.161 18 C -0.068 4.068 19 C -0.084 4.084 20 Cl -0.023 7.023 21 C -0.076 4.076 22 C -0.171 4.171 23 C 0.143 3.857 24 F -0.087 7.087 25 C -0.130 4.130 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.287 -23.158 3.759 24.050 hybrid contribution 0.169 0.880 -0.318 0.951 sum -5.118 -22.278 3.441 23.116 Atomic orbital electron populations 1.70003 1.05186 1.25568 1.54718 1.24988 0.95403 0.98325 1.01168 0.86259 0.79089 0.83523 0.77693 1.21413 1.21547 1.20524 1.19170 0.92236 0.84347 1.41855 0.91362 1.44127 1.29215 1.01216 1.57277 1.19773 0.88839 0.94798 0.89750 1.23321 0.95708 0.96574 0.98586 1.20489 1.00133 0.97261 0.99098 1.20528 0.96181 0.84020 0.95709 1.46109 1.56194 1.16068 1.17922 1.17877 0.80320 0.82368 0.85493 1.90854 1.49599 1.81369 1.18475 1.20099 1.04889 0.95989 0.95153 1.21175 0.93902 0.97851 0.93831 1.20809 1.02286 0.96504 0.88775 1.98413 1.84587 1.98579 1.20744 1.21104 0.97110 0.97210 0.92207 1.21130 1.00393 0.98752 0.96854 1.17758 0.94062 0.93584 0.80291 1.91630 1.84206 1.96392 1.36430 1.20797 0.96591 0.99043 0.96527 1.20990 0.97368 0.87186 0.92729 0.93578 0.94015 0.88807 0.88704 0.91216 0.91299 0.76356 0.83342 0.83346 0.82961 0.91625 0.92908 0.95862 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.70 11.08 55.49 0.61 -25.09 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.62 9.71 -15.06 -0.15 -6.77 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -14.43 3.01 -173.56 -0.52 -14.96 16 10 C 0.19 4.42 5.23 -5.10 -0.03 4.39 16 11 C -0.12 -2.21 9.47 -35.78 -0.34 -2.55 16 12 C -0.17 -2.77 5.22 -100.99 -0.53 -3.30 16 13 C 0.16 2.28 5.66 -5.19 -0.03 2.25 16 14 N -0.71 -8.99 5.50 -62.48 -0.34 -9.34 16 15 C 0.55 7.62 7.77 -12.40 -0.10 7.52 16 16 O -0.53 -9.15 15.34 5.30 0.08 -9.07 16 17 C -0.16 -1.72 5.88 -104.92 -0.62 -2.33 16 18 C -0.05 -0.42 9.32 -39.15 -0.36 -0.78 16 19 C -0.06 -0.44 6.31 -39.56 -0.25 -0.69 16 20 Cl -0.05 -0.40 28.95 -51.86 -1.50 -1.90 16 21 C -0.06 -0.36 9.82 -39.48 -0.39 -0.74 16 22 C -0.15 -1.07 10.01 -39.57 -0.40 -1.46 16 23 C 0.16 1.71 7.28 -38.96 -0.28 1.43 16 24 F -0.11 -1.40 15.55 2.25 0.04 -1.36 16 25 C -0.09 -1.51 5.95 -28.09 -0.17 -1.67 16 26 C 0.14 2.85 6.59 -3.44 -0.02 2.83 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 30 H 0.09 1.55 7.73 -52.48 -0.41 1.15 16 31 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 33 H 0.40 4.30 6.50 -40.82 -0.27 4.04 16 34 H 0.15 1.11 6.40 -52.49 -0.34 0.77 16 35 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -31.24 355.31 -9.71 -40.95 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.66 Total: 1.00 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.74 Total: -1.99 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.25 Total: -49.38 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.24 -9.71 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000921354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.864 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds