Wall clock time and date at job start Tue Mar 31 2020 20:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00543 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00075 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99986 * 3 2 1 7 7 C 1.38818 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99452 * 164.52248 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.51716 * 7 2 1 10 10 C 1.47012 * 121.37477 * 335.96978 * 9 7 2 11 11 C 1.50316 * 109.16472 * 222.96977 * 10 9 7 12 12 C 1.29454 * 123.65460 * 349.02174 * 11 10 9 13 13 C 1.50701 * 117.69515 * 180.85752 * 12 11 10 14 14 N 1.46498 * 109.46909 * 95.00396 * 13 12 11 15 15 C 1.34777 * 120.00095 * 180.02562 * 14 13 12 16 16 O 1.21575 * 119.99684 * 359.97438 * 15 14 13 17 17 C 1.47690 * 120.00202 * 179.97438 * 15 14 13 18 18 C 1.39654 * 120.15871 * 359.72421 * 17 15 14 19 19 C 1.37976 * 119.86157 * 179.71966 * 18 17 15 20 20 Cl 1.73602 * 119.90378 * 180.27515 * 19 18 17 21 21 C 1.38562 * 120.19049 * 0.55701 * 19 18 17 22 22 C 1.38191 * 120.32608 * 359.71634 * 21 19 18 23 23 C 1.38315 * 120.13452 * 0.02562 * 22 21 19 24 24 F 1.35103 * 120.10084 * 179.97438 * 23 22 21 25 25 C 1.49972 * 124.60958 * 1.14389 * 12 11 10 26 26 C 1.47334 * 121.37472 * 155.99900 * 9 7 2 27 27 H 0.97005 * 119.99607 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.51643 * 103.06283 * 10 9 7 29 29 H 1.09004 * 109.51808 * 342.88077 * 10 9 7 30 30 H 1.08004 * 118.16918 * 169.00040 * 11 10 9 31 31 H 1.08997 * 109.47020 * 215.00431 * 13 12 11 32 32 H 1.09001 * 109.47326 * 335.00184 * 13 12 11 33 33 H 0.96999 * 119.99901 * 359.97438 * 14 13 12 34 34 H 1.07994 * 120.06957 * 359.97438 * 18 17 15 35 35 H 1.08001 * 119.83458 * 179.70022 * 21 19 18 36 36 H 1.08002 * 119.93426 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.31400 * 101.00822 * 25 12 11 38 38 H 1.08997 * 109.31188 * 220.43728 * 25 12 11 39 39 H 1.09009 * 109.77415 * 237.78568 * 26 9 7 40 40 H 1.09001 * 109.77952 * 358.58972 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0607 -1.2193 -0.2491 9 7 1.3626 -2.3665 0.3176 10 6 0.1442 -2.3650 1.1402 11 6 0.2243 -3.4820 2.1428 12 6 1.1199 -4.4161 2.1062 13 6 1.0634 -5.4827 3.1693 14 7 0.3196 -6.6385 2.6623 15 6 0.1400 -7.7206 3.4453 16 8 0.5957 -7.7378 4.5723 17 6 -0.6104 -8.8856 2.9344 18 6 -1.1402 -8.8671 1.6424 19 6 -1.8352 -9.9611 1.1692 20 17 -2.4882 -9.9422 -0.4392 21 6 -2.0185 -11.0725 1.9761 22 6 -1.5024 -11.0970 3.2578 23 6 -0.7990 -10.0098 3.7440 24 9 -0.2952 -10.0342 4.9973 25 6 2.2135 -4.5080 1.0841 26 6 1.8587 -3.6723 -0.1509 27 1 -0.4850 0.8401 0.0004 28 1 -0.7268 -2.5109 0.5011 29 1 0.0584 -1.4121 1.6624 30 1 -0.5058 -3.5065 2.9383 31 1 2.0762 -5.7888 3.4311 32 1 0.5631 -5.0881 4.0537 33 1 -0.0444 -6.6246 1.7632 34 1 -1.0028 -8.0000 1.0135 35 1 -2.5676 -11.9238 1.6016 36 1 -1.6494 -11.9664 3.8815 37 1 3.1438 -4.1408 1.5174 38 1 2.3432 -5.5488 0.7876 39 1 1.0843 -4.1745 -0.7309 40 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000921354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:17 Heat of formation + Delta-G solvation = -37.982970 kcal Electronic energy + Delta-G solvation = -25858.252214 eV Core-core repulsion = 21806.537039 eV Total energy + Delta-G solvation = -4051.715175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.04269 -41.30846 -39.80345 -39.20475 -37.44459 -36.49802 -34.68409 -33.11965 -32.20878 -31.41550 -31.37335 -28.63071 -26.28421 -25.04789 -24.38238 -23.72668 -22.79235 -21.83378 -19.76592 -19.39118 -18.38074 -17.97168 -17.44975 -17.08779 -16.94190 -16.78659 -16.58145 -16.15721 -15.79924 -15.60957 -15.34525 -15.19592 -14.72292 -14.56192 -14.48704 -14.27239 -13.96814 -13.67651 -13.63816 -13.27565 -12.94589 -12.80989 -12.72266 -12.58400 -12.33463 -12.24901 -12.13082 -12.09438 -11.71257 -11.34079 -11.18101 -10.68569 -10.50002 -10.18219 -9.74249 -9.68434 -8.74959 -7.88791 -5.29547 -0.57461 -0.16961 0.97450 1.12731 1.46583 1.48668 1.56850 1.57628 2.20028 2.40519 2.51150 2.97903 3.28677 3.36847 3.48520 3.61689 3.84436 3.87332 3.95068 3.96787 4.28725 4.41548 4.51395 4.53377 4.61758 4.70582 4.74656 4.83017 4.84855 4.90594 4.94249 5.09428 5.20364 5.23981 5.39391 5.44024 5.47908 5.61490 5.74975 6.14396 6.33815 6.35777 7.00468 7.13570 7.83648 8.36991 9.19764 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.002467 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.310133 B =11348.420380 C =12501.075746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.167 3.833 14 N -0.703 5.703 15 C 0.554 3.446 16 O -0.569 6.569 17 C -0.175 4.175 18 C -0.046 4.046 19 C -0.059 4.059 20 Cl -0.050 7.050 21 C -0.041 4.041 22 C -0.138 4.138 23 C 0.140 3.860 24 F -0.130 7.130 25 C -0.085 4.085 26 C 0.139 3.861 27 H 0.250 0.750 28 H 0.016 0.984 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.412 0.588 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.030 0.970 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -25.913 2.607 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.159 4.159 12 C -0.141 4.141 13 C 0.044 3.956 14 N -0.354 5.354 15 C 0.342 3.658 16 O -0.449 6.449 17 C -0.179 4.179 18 C -0.066 4.066 19 C -0.086 4.086 20 Cl -0.020 7.020 21 C -0.059 4.059 22 C -0.157 4.157 23 C 0.119 3.881 24 F -0.108 7.108 25 C -0.123 4.123 26 C 0.014 3.986 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.249 0.751 34 H 0.175 0.825 35 H 0.200 0.800 36 H 0.199 0.801 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.244 -25.743 3.293 26.478 hybrid contribution 0.146 1.541 -0.271 1.572 sum -5.098 -24.202 3.023 24.917 Atomic orbital electron populations 1.70158 1.06447 1.25773 1.56128 1.25717 0.96162 1.01266 1.01692 0.85291 0.77980 0.79727 0.77551 1.21092 1.21991 1.19779 1.19496 0.92545 0.85655 1.40998 0.91252 1.44409 1.29419 1.02166 1.57961 1.19410 0.87767 0.94910 0.89943 1.22980 0.98016 0.96052 0.98844 1.20580 0.98446 0.96567 0.98548 1.20302 0.96646 0.83912 0.94703 1.45920 1.55812 1.15343 1.18366 1.18272 0.79742 0.82952 0.84845 1.90829 1.51534 1.82249 1.20300 1.19878 1.06349 0.95340 0.96329 1.21216 0.93697 0.98668 0.92983 1.20935 1.01970 0.96675 0.89045 1.98423 1.84465 1.98572 1.20587 1.21503 0.95655 0.97442 0.91311 1.21427 0.98627 0.98341 0.97282 1.18170 0.95366 0.94779 0.79742 1.91575 1.84809 1.96571 1.37840 1.20737 0.96239 1.00398 0.94970 1.21182 0.97435 0.85738 0.94293 0.94126 0.96608 0.92495 0.86922 0.90931 0.91672 0.75062 0.82481 0.80025 0.80094 0.91804 0.89345 0.95153 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.74 11.08 21.65 0.24 -54.50 16 2 C -0.05 -2.96 5.01 84.86 0.43 -2.54 16 3 Si 0.97 44.71 29.58 68.60 2.03 46.74 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.26 -13.96 9.71 84.03 0.82 -13.14 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.62 -30.19 3.01 -703.02 -2.11 -32.30 16 10 C 0.20 9.66 5.23 85.41 0.45 10.11 16 11 C -0.14 -5.02 9.47 27.10 0.26 -4.76 16 12 C -0.14 -4.40 5.22 -15.14 -0.08 -4.48 16 13 C 0.17 4.58 5.66 85.63 0.48 5.06 16 14 N -0.70 -16.70 5.50 -469.86 -2.58 -19.28 16 15 C 0.55 14.86 7.77 86.74 0.67 15.53 16 16 O -0.57 -19.86 15.34 -3.95 -0.06 -19.92 16 17 C -0.17 -3.61 5.88 -20.06 -0.12 -3.73 16 18 C -0.05 -0.71 9.32 22.55 0.21 -0.50 16 19 C -0.06 -0.74 6.31 22.28 0.14 -0.60 16 20 Cl -0.05 -0.63 28.95 -2.72 -0.08 -0.71 16 21 C -0.04 -0.35 9.82 22.34 0.22 -0.13 16 22 C -0.14 -1.52 10.01 22.28 0.22 -1.29 16 23 C 0.14 2.75 7.28 22.67 0.17 2.91 16 24 F -0.13 -3.33 15.55 44.97 0.70 -2.63 16 25 C -0.08 -2.64 5.95 29.71 0.18 -2.46 16 26 C 0.14 5.36 6.59 86.31 0.57 5.93 16 27 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 3.07 6.41 -2.38 -0.02 3.06 16 30 H 0.11 3.66 7.73 -2.91 -0.02 3.63 16 31 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 32 H 0.06 1.88 7.78 -2.39 -0.02 1.86 16 33 H 0.41 7.99 6.50 -92.71 -0.60 7.39 16 34 H 0.16 2.01 6.40 -2.91 -0.02 2.00 16 35 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 Total: -1.00 -70.00 355.31 3.23 -66.77 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.49 Total: 9.93 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 4.61 Total: 5.90 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.46 Total: -106.09 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.70 Total: -2.63 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -70.00 3.23 -66.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000921354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.783 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds