Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47186 * 269.99675 * 3 2 1 5 5 H 1.48496 * 109.47179 * 29.99930 * 3 2 1 6 6 H 1.48503 * 109.46935 * 149.99787 * 3 2 1 7 7 C 1.38813 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 164.51784 * 7 2 1 9 9 N 1.36941 * 119.99739 * 344.52294 * 7 2 1 10 10 C 1.47003 * 121.37330 * 335.96590 * 9 7 2 11 11 C 1.50325 * 109.16507 * 222.97286 * 10 9 7 12 12 C 1.29455 * 123.64979 * 349.01824 * 11 10 9 13 13 C 1.50704 * 117.69162 * 180.86023 * 12 11 10 14 14 N 1.46495 * 109.46779 * 95.00797 * 13 12 11 15 15 C 1.34783 * 119.99531 * 180.02562 * 14 13 12 16 16 O 1.21576 * 120.00085 * 359.97438 * 15 14 13 17 17 C 1.47633 * 119.99684 * 179.97438 * 15 14 13 18 18 C 1.39702 * 120.15523 * 359.71828 * 17 15 14 19 19 C 1.37790 * 119.89245 * 180.27327 * 18 17 15 20 20 C 1.38613 * 120.20355 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.84212 * 180.02562 * 20 19 18 22 22 C 1.38355 * 120.31465 * 359.97438 * 20 19 18 23 23 C 1.38257 * 120.10233 * 0.02562 * 22 20 19 24 24 F 1.35099 * 120.10333 * 179.97438 * 23 22 20 25 25 C 1.49972 * 124.60973 * 1.14717 * 12 11 10 26 26 C 1.47333 * 121.37250 * 155.99212 * 9 7 2 27 27 H 0.97007 * 119.99882 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52307 * 103.06699 * 10 9 7 29 29 H 1.08998 * 109.52631 * 342.87987 * 10 9 7 30 30 H 1.07994 * 118.17414 * 169.00254 * 11 10 9 31 31 H 1.08996 * 109.46890 * 335.00085 * 13 12 11 32 32 H 1.08999 * 109.46746 * 215.00389 * 13 12 11 33 33 H 0.96996 * 120.00284 * 359.97438 * 14 13 12 34 34 H 1.08004 * 120.04742 * 0.25757 * 18 17 15 35 35 H 1.07998 * 119.89614 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.94913 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.31633 * 101.00700 * 25 12 11 38 38 H 1.08999 * 109.31013 * 220.43193 * 25 12 11 39 39 H 1.08998 * 109.77616 * 237.78262 * 26 9 7 40 40 H 1.09004 * 109.78167 * 358.59511 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2491 9 7 1.3627 -2.3664 0.3175 10 6 0.1443 -2.3651 1.1400 11 6 0.2245 -3.4821 2.1427 12 6 1.1202 -4.4161 2.1060 13 6 1.0636 -5.4828 3.1691 14 7 0.3199 -6.6386 2.6619 15 6 0.1404 -7.7208 3.4450 16 8 0.5961 -7.7380 4.5720 17 6 -0.6095 -8.8853 2.9341 18 6 -1.1396 -8.8667 1.6417 19 6 -1.8435 -9.9543 1.1724 20 6 -2.0277 -11.0665 1.9789 21 17 -2.9155 -12.4319 1.3779 22 6 -1.5064 -11.0941 3.2602 23 6 -0.7981 -10.0099 3.7441 24 9 -0.2895 -10.0365 4.9955 25 6 2.2137 -4.5079 1.0838 26 6 1.8589 -3.6721 -0.1512 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7266 -2.5110 0.5011 29 1 0.0584 -1.4122 1.6623 30 1 -0.5056 -3.5067 2.9381 31 1 0.5633 -5.0883 4.0534 32 1 2.0765 -5.7889 3.4308 33 1 -0.0439 -6.6247 1.7629 34 1 -0.9980 -8.0010 1.0116 35 1 -2.2536 -9.9398 0.1734 36 1 -1.6531 -11.9639 3.8834 37 1 3.1440 -4.1407 1.5171 38 1 2.3436 -5.5487 0.7874 39 1 1.0846 -4.1743 -0.7310 40 1 2.7476 -3.5299 -0.7662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000923378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = -20.178485 kcal Electronic energy + Delta-G solvation = -25713.836302 eV Core-core repulsion = 21662.893188 eV Total energy + Delta-G solvation = -4050.943114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.22691 -40.36128 -38.91112 -37.78678 -36.95929 -35.07941 -33.12693 -31.81087 -31.11395 -30.73453 -29.76134 -27.08600 -24.80932 -23.92683 -23.14140 -22.75859 -21.20584 -20.82416 -18.79907 -17.81268 -17.55334 -17.15932 -16.15842 -16.02243 -15.71166 -15.63719 -15.27194 -15.03409 -14.87275 -14.20242 -13.91299 -13.82302 -13.77219 -13.62638 -13.44141 -13.03279 -12.88522 -12.34631 -12.16409 -12.08189 -11.79065 -11.62960 -11.57880 -11.42875 -10.96526 -10.76722 -10.48204 -10.37582 -10.14515 -9.88483 -9.66664 -9.62108 -9.30541 -9.03918 -8.73950 -8.14190 -6.80660 -5.85355 -3.24123 0.05407 0.53546 1.41896 2.37971 2.45269 3.22821 3.29379 3.34745 3.42001 3.44282 3.68800 4.04480 4.33102 4.38705 4.45030 4.55359 4.86182 5.03777 5.23728 5.28238 5.34244 5.38155 5.45785 5.49857 5.53128 5.74761 5.86680 5.99864 6.06906 6.09452 6.25475 6.31386 6.44521 6.66192 6.79840 7.08810 7.18178 7.24196 7.39973 7.66591 7.76068 8.03985 8.32366 9.13871 9.76577 10.34035 11.25196 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002131 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.523280 B =13135.692469 C =13896.932445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.122 4.122 12 C -0.169 4.169 13 C 0.158 3.842 14 N -0.712 5.712 15 C 0.552 3.448 16 O -0.527 6.527 17 C -0.165 4.165 18 C -0.043 4.043 19 C -0.128 4.128 20 C 0.014 3.986 21 Cl -0.050 7.050 22 C -0.160 4.160 23 C 0.173 3.827 24 F -0.107 7.107 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -22.963 2.701 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.142 4.142 12 C -0.169 4.169 13 C 0.035 3.965 14 N -0.363 5.363 15 C 0.338 3.662 16 O -0.404 6.404 17 C -0.170 4.170 18 C -0.062 4.062 19 C -0.147 4.147 20 C -0.014 4.014 21 Cl -0.021 7.021 22 C -0.179 4.179 23 C 0.152 3.848 24 F -0.084 7.084 25 C -0.130 4.130 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.275 -22.897 3.516 23.758 hybrid contribution 0.146 0.718 -0.188 0.756 sum -5.128 -22.179 3.327 23.006 Atomic orbital electron populations 1.69998 1.05191 1.25586 1.54724 1.24988 0.95406 0.98335 1.01157 0.86259 0.79096 0.83516 0.77697 1.21410 1.21543 1.20514 1.19170 0.92239 0.84337 1.41860 0.91355 1.44126 1.29214 1.01218 1.57276 1.19772 0.88831 0.94817 0.89755 1.23323 0.95748 0.96567 0.98594 1.20491 1.00096 0.97269 0.99087 1.20522 0.96190 0.84046 0.95699 1.46093 1.56261 1.16061 1.17901 1.17916 0.80329 0.82432 0.85501 1.90853 1.49583 1.81427 1.18546 1.20284 1.05010 0.95707 0.95950 1.21260 0.93341 0.98299 0.93317 1.21088 1.00679 0.91859 1.01024 1.20844 0.96533 0.90274 0.93719 1.98412 1.73434 1.42667 1.87591 1.20973 1.01266 0.99642 0.96024 1.17428 0.93864 0.93079 0.80413 1.91637 1.83975 1.96337 1.36492 1.20797 0.96602 0.99028 0.96524 1.20988 0.97357 0.87190 0.92730 0.93566 0.94021 0.88808 0.88704 0.91330 0.91250 0.76368 0.83295 0.83323 0.82928 0.91634 0.92908 0.95884 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.53 11.08 55.49 0.61 -24.92 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.57 9.71 -15.06 -0.15 -6.71 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -14.26 3.01 -173.57 -0.52 -14.79 16 10 C 0.19 4.36 5.23 -5.10 -0.03 4.34 16 11 C -0.12 -2.18 9.47 -35.78 -0.34 -2.52 16 12 C -0.17 -2.71 5.22 -100.99 -0.53 -3.24 16 13 C 0.16 2.24 5.66 -5.19 -0.03 2.21 16 14 N -0.71 -8.67 5.50 -62.50 -0.34 -9.01 16 15 C 0.55 7.45 7.77 -12.42 -0.10 7.35 16 16 O -0.53 -9.13 15.34 5.30 0.08 -9.05 16 17 C -0.17 -1.76 5.88 -104.91 -0.62 -2.38 16 18 C -0.04 -0.33 9.54 -39.20 -0.37 -0.70 16 19 C -0.13 -0.84 9.81 -39.61 -0.39 -1.23 16 20 C 0.01 0.10 6.32 -39.40 -0.25 -0.15 16 21 Cl -0.05 -0.34 28.95 -51.86 -1.50 -1.84 16 22 C -0.16 -1.30 9.79 -39.53 -0.39 -1.69 16 23 C 0.17 1.86 7.28 -38.97 -0.28 1.58 16 24 F -0.11 -1.40 15.55 2.25 0.04 -1.37 16 25 C -0.09 -1.47 5.95 -28.09 -0.17 -1.64 16 26 C 0.14 2.80 6.59 -3.44 -0.02 2.77 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 30 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 31 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 32 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.40 3.99 6.49 -40.82 -0.27 3.72 16 34 H 0.15 0.82 6.40 -52.48 -0.34 0.48 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -31.04 355.30 -9.71 -40.76 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.66 Total: 0.72 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.74 Total: -2.12 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.25 Total: -48.72 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.04 -9.71 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000923378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.579 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds