Wall clock time and date at job start Tue Mar 31 2020 20:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47186 * 269.99675 * 3 2 1 5 5 H 1.48496 * 109.47179 * 29.99930 * 3 2 1 6 6 H 1.48503 * 109.46935 * 149.99787 * 3 2 1 7 7 C 1.38813 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 164.51784 * 7 2 1 9 9 N 1.36941 * 119.99739 * 344.52294 * 7 2 1 10 10 C 1.47003 * 121.37330 * 335.96590 * 9 7 2 11 11 C 1.50325 * 109.16507 * 222.97286 * 10 9 7 12 12 C 1.29455 * 123.64979 * 349.01824 * 11 10 9 13 13 C 1.50704 * 117.69162 * 180.86023 * 12 11 10 14 14 N 1.46495 * 109.46779 * 95.00797 * 13 12 11 15 15 C 1.34783 * 119.99531 * 180.02562 * 14 13 12 16 16 O 1.21576 * 120.00085 * 359.97438 * 15 14 13 17 17 C 1.47633 * 119.99684 * 179.97438 * 15 14 13 18 18 C 1.39702 * 120.15523 * 359.71828 * 17 15 14 19 19 C 1.37790 * 119.89245 * 180.27327 * 18 17 15 20 20 C 1.38613 * 120.20355 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.84212 * 180.02562 * 20 19 18 22 22 C 1.38355 * 120.31465 * 359.97438 * 20 19 18 23 23 C 1.38257 * 120.10233 * 0.02562 * 22 20 19 24 24 F 1.35099 * 120.10333 * 179.97438 * 23 22 20 25 25 C 1.49972 * 124.60973 * 1.14717 * 12 11 10 26 26 C 1.47333 * 121.37250 * 155.99212 * 9 7 2 27 27 H 0.97007 * 119.99882 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52307 * 103.06699 * 10 9 7 29 29 H 1.08998 * 109.52631 * 342.87987 * 10 9 7 30 30 H 1.07994 * 118.17414 * 169.00254 * 11 10 9 31 31 H 1.08996 * 109.46890 * 335.00085 * 13 12 11 32 32 H 1.08999 * 109.46746 * 215.00389 * 13 12 11 33 33 H 0.96996 * 120.00284 * 359.97438 * 14 13 12 34 34 H 1.08004 * 120.04742 * 0.25757 * 18 17 15 35 35 H 1.07998 * 119.89614 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.94913 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.31633 * 101.00700 * 25 12 11 38 38 H 1.08999 * 109.31013 * 220.43193 * 25 12 11 39 39 H 1.08998 * 109.77616 * 237.78262 * 26 9 7 40 40 H 1.09004 * 109.78167 * 358.59511 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2491 9 7 1.3627 -2.3664 0.3175 10 6 0.1443 -2.3651 1.1400 11 6 0.2245 -3.4821 2.1427 12 6 1.1202 -4.4161 2.1060 13 6 1.0636 -5.4828 3.1691 14 7 0.3199 -6.6386 2.6619 15 6 0.1404 -7.7208 3.4450 16 8 0.5961 -7.7380 4.5720 17 6 -0.6095 -8.8853 2.9341 18 6 -1.1396 -8.8667 1.6417 19 6 -1.8435 -9.9543 1.1724 20 6 -2.0277 -11.0665 1.9789 21 17 -2.9155 -12.4319 1.3779 22 6 -1.5064 -11.0941 3.2602 23 6 -0.7981 -10.0099 3.7441 24 9 -0.2895 -10.0365 4.9955 25 6 2.2137 -4.5079 1.0838 26 6 1.8589 -3.6721 -0.1512 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7266 -2.5110 0.5011 29 1 0.0584 -1.4122 1.6623 30 1 -0.5056 -3.5067 2.9381 31 1 0.5633 -5.0883 4.0534 32 1 2.0765 -5.7889 3.4308 33 1 -0.0439 -6.6247 1.7629 34 1 -0.9980 -8.0010 1.0116 35 1 -2.2536 -9.9398 0.1734 36 1 -1.6531 -11.9639 3.8834 37 1 3.1440 -4.1407 1.5171 38 1 2.3436 -5.5487 0.7874 39 1 1.0846 -4.1743 -0.7310 40 1 2.7476 -3.5299 -0.7662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000923378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:47 Heat of formation + Delta-G solvation = -37.859142 kcal Electronic energy + Delta-G solvation = -25714.602993 eV Core-core repulsion = 21662.893188 eV Total energy + Delta-G solvation = -4051.709805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.07819 -41.28413 -39.80324 -39.19654 -37.55287 -36.47941 -34.64965 -32.98819 -32.08286 -31.73018 -31.36540 -28.58545 -26.21513 -24.92746 -24.36395 -23.85292 -22.78345 -21.80585 -19.72586 -19.37843 -18.49654 -17.98033 -17.38837 -17.06958 -16.95053 -16.71127 -16.51220 -16.15104 -15.90898 -15.61139 -15.32811 -15.17710 -14.73676 -14.61001 -14.47983 -14.28299 -13.94673 -13.63701 -13.58834 -13.25875 -12.92954 -12.81293 -12.74037 -12.57325 -12.43744 -12.23747 -12.12097 -12.10261 -11.69673 -11.33178 -11.17274 -10.67495 -10.33145 -10.17428 -9.86860 -9.66247 -8.73344 -7.87929 -5.28310 -0.65395 -0.08452 0.84198 1.14543 1.47073 1.49342 1.55515 1.58019 2.22128 2.42908 2.51869 2.99282 3.29647 3.44798 3.51976 3.63574 3.79815 3.86901 3.90776 3.97349 4.28087 4.43848 4.53935 4.55761 4.67447 4.74205 4.78616 4.85493 4.86795 4.92650 4.94089 5.11927 5.22906 5.26639 5.41454 5.43146 5.50208 5.62770 5.77392 6.16605 6.35116 6.40666 7.05054 7.14911 7.85308 8.38126 9.20559 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002131 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.523280 B =13135.692469 C =13896.932445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.616 5.616 10 C 0.204 3.796 11 C -0.139 4.139 12 C -0.139 4.139 13 C 0.167 3.833 14 N -0.700 5.700 15 C 0.553 3.447 16 O -0.572 6.572 17 C -0.181 4.181 18 C -0.033 4.033 19 C -0.117 4.117 20 C 0.015 3.985 21 Cl -0.040 7.040 22 C -0.155 4.155 23 C 0.148 3.852 24 F -0.129 7.129 25 C -0.085 4.085 26 C 0.139 3.861 27 H 0.249 0.751 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.166 0.834 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 -24.896 1.664 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.159 4.159 12 C -0.140 4.140 13 C 0.044 3.956 14 N -0.352 5.352 15 C 0.341 3.659 16 O -0.453 6.453 17 C -0.185 4.185 18 C -0.052 4.052 19 C -0.135 4.135 20 C -0.012 4.012 21 Cl -0.011 7.011 22 C -0.174 4.174 23 C 0.128 3.872 24 F -0.107 7.107 25 C -0.123 4.123 26 C 0.013 3.987 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.252 0.748 34 H 0.190 0.810 35 H 0.195 0.805 36 H 0.184 0.816 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.174 -24.863 2.445 25.513 hybrid contribution 0.104 1.179 0.047 1.185 sum -5.070 -23.684 2.491 24.349 Atomic orbital electron populations 1.70149 1.06411 1.25744 1.56210 1.25700 0.96155 1.01220 1.01787 0.85309 0.77986 0.79834 0.77540 1.21105 1.22057 1.19823 1.19489 0.92527 0.85671 1.40855 0.91281 1.44410 1.29418 1.02183 1.57971 1.19413 0.87804 0.94896 0.89974 1.22973 0.98078 0.96019 0.98824 1.20567 0.98382 0.96544 0.98501 1.20287 0.96609 0.83996 0.94702 1.45870 1.55785 1.15152 1.18410 1.18301 0.79733 0.83040 0.84841 1.90830 1.51587 1.82324 1.20536 1.20152 1.06289 0.94715 0.97390 1.21492 0.92294 0.99344 0.92040 1.21424 0.99351 0.90822 1.01935 1.20986 0.95995 0.90812 0.93434 1.98424 1.73079 1.42245 1.87341 1.21079 1.00458 0.99276 0.96595 1.17732 0.95271 0.94268 0.79963 1.91576 1.84602 1.96536 1.37988 1.20740 0.96153 1.00491 0.94952 1.21191 0.97481 0.85683 0.94299 0.94142 0.96466 0.92613 0.86956 0.91829 0.91075 0.74779 0.80951 0.80497 0.81602 0.91989 0.89155 0.94890 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.18 11.08 21.65 0.24 -53.94 16 2 C -0.05 -2.95 5.01 84.86 0.43 -2.52 16 3 Si 0.96 44.33 29.58 68.60 2.03 46.36 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.26 -13.69 9.71 84.03 0.82 -12.87 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.62 -29.59 3.01 -703.05 -2.11 -31.70 16 10 C 0.20 9.42 5.23 85.42 0.45 9.87 16 11 C -0.14 -4.86 9.47 27.11 0.26 -4.61 16 12 C -0.14 -4.18 5.22 -15.14 -0.08 -4.26 16 13 C 0.17 4.39 5.66 85.64 0.48 4.88 16 14 N -0.70 -15.42 5.50 -469.91 -2.58 -18.00 16 15 C 0.55 14.26 7.77 86.72 0.67 14.93 16 16 O -0.57 -19.83 15.34 -3.95 -0.06 -19.89 16 17 C -0.18 -3.57 5.88 -20.05 -0.12 -3.69 16 18 C -0.03 -0.39 9.54 22.52 0.21 -0.18 16 19 C -0.12 -1.12 9.81 22.25 0.22 -0.90 16 20 C 0.02 0.18 6.32 22.39 0.14 0.32 16 21 Cl -0.04 -0.43 28.95 -2.72 -0.08 -0.51 16 22 C -0.15 -2.27 9.79 22.30 0.22 -2.06 16 23 C 0.15 3.09 7.28 22.67 0.17 3.25 16 24 F -0.13 -3.47 15.55 44.97 0.70 -2.77 16 25 C -0.08 -2.53 5.95 29.72 0.18 -2.35 16 26 C 0.14 5.17 6.59 86.32 0.57 5.74 16 27 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 2.97 6.41 -2.39 -0.02 2.95 16 30 H 0.11 3.53 7.73 -2.91 -0.02 3.51 16 31 H 0.06 1.79 7.78 -2.39 -0.02 1.77 16 32 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 33 H 0.41 6.86 6.49 -92.71 -0.60 6.26 16 34 H 0.17 1.17 6.40 -2.91 -0.02 1.15 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.14 7.96 -2.38 -0.02 2.12 16 Total: -1.00 -69.51 355.30 3.23 -66.29 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.49 Total: 8.61 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 4.61 Total: 5.55 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -4.46 Total: -103.64 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.70 Total: -2.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -69.51 3.23 -66.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000923378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.426 kcal (2) G-P(sol) polarization free energy of solvation -69.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds