Wall clock time and date at job start Tue Mar 31 2020 20:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47344 * 274.45660 * 3 2 1 5 5 H 1.48501 * 109.46971 * 34.45840 * 3 2 1 6 6 H 1.48499 * 109.47130 * 154.45583 * 3 2 1 7 7 C 1.38816 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00214 * 164.49187 * 7 2 1 9 9 N 1.36936 * 119.99627 * 344.49529 * 7 2 1 10 10 C 1.47009 * 121.37430 * 335.97998 * 9 7 2 11 11 C 1.50328 * 109.16356 * 222.96902 * 10 9 7 12 12 C 1.29456 * 123.65013 * 349.02070 * 11 10 9 13 13 C 1.50698 * 117.69241 * 180.86017 * 12 11 10 14 14 N 1.46504 * 109.47168 * 94.99972 * 13 12 11 15 15 C 1.34773 * 119.99907 * 180.27273 * 14 13 12 16 16 O 1.21570 * 120.00243 * 359.72826 * 15 14 13 17 17 C 1.47730 * 119.99755 * 179.72559 * 15 14 13 18 18 C 1.39668 * 120.10914 * 180.02562 * 17 15 14 19 19 C 1.37838 * 119.90091 * 180.02562 * 18 17 15 20 20 C 1.38640 * 120.13458 * 0.02562 * 19 18 17 21 21 F 1.35098 * 119.88704 * 179.97438 * 20 19 18 22 22 C 1.38746 * 120.22810 * 0.02562 * 20 19 18 23 23 Cl 1.73593 * 119.95246 * 179.97438 * 22 20 19 24 24 C 1.37969 * 120.09507 * 359.67507 * 22 20 19 25 25 C 1.49966 * 124.61113 * 1.13607 * 12 11 10 26 26 C 1.47340 * 121.37729 * 155.99710 * 9 7 2 27 27 H 0.96998 * 120.00118 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.52293 * 103.06421 * 10 9 7 29 29 H 1.09001 * 109.52469 * 342.87150 * 10 9 7 30 30 H 1.07996 * 118.17364 * 169.00213 * 11 10 9 31 31 H 1.08997 * 109.47609 * 335.00023 * 13 12 11 32 32 H 1.09000 * 109.46888 * 214.99831 * 13 12 11 33 33 H 0.97002 * 120.00160 * 0.02562 * 14 13 12 34 34 H 1.07995 * 120.04923 * 0.02562 * 18 17 15 35 35 H 1.07999 * 119.93321 * 180.02562 * 19 18 17 36 36 H 1.07990 * 120.06892 * 180.31958 * 24 22 20 37 37 H 1.09003 * 109.31592 * 101.01042 * 25 12 11 38 38 H 1.08997 * 109.31925 * 220.43693 * 25 12 11 39 39 H 1.09003 * 109.77972 * 237.79174 * 26 9 7 40 40 H 1.08998 * 109.77360 * 358.59884 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1009 -1.3958 5 1 1.4978 2.6236 0.7922 6 1 3.5916 1.4149 0.6037 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2190 -0.2506 9 7 1.3631 -2.3666 0.3160 10 6 0.1447 -2.3658 1.1387 11 6 0.2252 -3.4835 2.1408 12 6 1.1210 -4.4174 2.1033 13 6 1.0648 -5.4847 3.1657 14 7 0.3209 -6.6403 2.6581 15 6 0.1374 -7.7209 3.4422 16 8 0.5934 -7.7388 4.5691 17 6 -0.6179 -8.8837 2.9325 18 6 -0.8099 -10.0046 3.7433 19 6 -1.5149 -11.0874 3.2632 20 6 -2.0329 -11.0659 1.9773 21 9 -2.7226 -12.1302 1.5116 22 6 -1.8445 -9.9557 1.1668 23 17 -2.4956 -9.9368 -0.4423 24 6 -1.1456 -8.8643 1.6400 25 6 2.2142 -4.5086 1.0808 26 6 1.8591 -3.6721 -0.1537 27 1 -0.4850 0.8400 0.0004 28 1 -0.7264 -2.5114 0.4998 29 1 0.0589 -1.4133 1.6617 30 1 -0.5047 -3.5086 2.9363 31 1 0.5647 -5.0909 4.0504 32 1 2.0778 -5.7909 3.4270 33 1 -0.0426 -6.6262 1.7589 34 1 -0.4067 -10.0229 4.7450 35 1 -1.6640 -11.9542 3.8898 36 1 -1.0037 -7.9983 1.0105 37 1 3.1447 -4.1415 1.5140 38 1 2.3441 -5.5492 0.7837 39 1 1.0846 -4.1740 -0.7337 40 1 2.7475 -3.5294 -0.7688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001105530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:10 Heat of formation + Delta-G solvation = -21.089690 kcal Electronic energy + Delta-G solvation = -25627.659913 eV Core-core repulsion = 21576.677286 eV Total energy + Delta-G solvation = -4050.982627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.49258 -40.52742 -38.76655 -37.76742 -36.92231 -35.12635 -33.14423 -31.72415 -31.24477 -30.68391 -29.75465 -27.08289 -24.75929 -23.90971 -23.29948 -22.76870 -21.20034 -20.82369 -18.85887 -17.94028 -17.60861 -17.24512 -16.29647 -16.00043 -15.79822 -15.61290 -15.38489 -14.99891 -14.63611 -14.39695 -13.98369 -13.81554 -13.74851 -13.51753 -13.40524 -13.23828 -12.99978 -12.34996 -12.14954 -11.92492 -11.89467 -11.63034 -11.49142 -11.42850 -10.96555 -10.76838 -10.49460 -10.37187 -10.22034 -9.88035 -9.66633 -9.64048 -9.30408 -9.06463 -8.73795 -8.14322 -6.80205 -5.84876 -3.23667 0.09213 0.47275 1.50654 2.32167 2.45189 3.24976 3.30337 3.34861 3.42281 3.44503 3.46060 4.02979 4.26451 4.45339 4.46811 4.64703 4.88711 5.02012 5.16823 5.25835 5.27406 5.34391 5.47618 5.51057 5.65515 5.73575 5.85563 6.00030 6.02195 6.09108 6.25821 6.28894 6.44354 6.66712 6.80455 7.08810 7.18154 7.24057 7.38096 7.66762 7.76334 7.99520 8.32728 9.14274 9.76972 10.34524 11.25666 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.002321 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.734683 B =12062.396010 C =13038.693898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.121 4.121 12 C -0.170 4.170 13 C 0.157 3.843 14 N -0.712 5.712 15 C 0.557 3.443 16 O -0.536 6.536 17 C -0.129 4.129 18 C -0.028 4.028 19 C -0.149 4.149 20 C 0.132 3.868 21 F -0.122 7.122 22 C -0.082 4.082 23 Cl -0.039 7.039 24 C -0.049 4.049 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -22.245 4.680 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.035 3.965 14 N -0.363 5.363 15 C 0.343 3.657 16 O -0.415 6.415 17 C -0.132 4.132 18 C -0.047 4.047 19 C -0.168 4.168 20 C 0.111 3.889 21 F -0.100 7.100 22 C -0.110 4.110 23 Cl -0.010 7.010 24 C -0.069 4.069 25 C -0.129 4.129 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.167 -22.091 5.310 23.100 hybrid contribution -0.068 0.697 -0.670 0.969 sum -4.235 -21.395 4.640 22.298 Atomic orbital electron populations 1.70001 1.05187 1.25560 1.54729 1.24988 0.95399 0.98328 1.01167 0.86245 0.79136 0.83599 0.77605 1.21474 1.21546 1.20461 1.19178 0.92252 0.84317 1.41850 0.91344 1.44130 1.29227 1.01227 1.57249 1.19775 0.88847 0.94793 0.89767 1.23324 0.95690 0.96581 0.98570 1.20488 1.00149 0.97279 0.99125 1.20533 0.96191 0.84069 0.95705 1.46159 1.55977 1.16261 1.17918 1.18002 0.80031 0.82352 0.85322 1.90796 1.50330 1.81520 1.18819 1.20065 1.02276 0.96510 0.94370 1.21272 0.93102 0.90007 1.00272 1.21151 1.00603 1.01145 0.93899 1.17668 0.94700 0.83753 0.92773 1.91569 1.76325 1.53463 1.88663 1.20867 1.04608 0.96152 0.89347 1.98421 1.84557 1.98516 1.19539 1.21203 0.93763 0.96957 0.94940 1.20794 0.96591 0.99040 0.96524 1.20992 0.97377 0.87195 0.92735 0.93578 0.94018 0.88804 0.88701 0.91278 0.91192 0.76310 0.82793 0.82930 0.83293 0.91629 0.92906 0.95863 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.59 11.08 55.49 0.61 -24.98 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.31 29.58 -169.99 -5.03 16.28 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.58 9.71 -15.06 -0.15 -6.73 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -14.31 3.01 -173.55 -0.52 -14.83 16 10 C 0.19 4.37 5.23 -5.10 -0.03 4.34 16 11 C -0.12 -2.16 9.47 -35.78 -0.34 -2.50 16 12 C -0.17 -2.70 5.22 -100.99 -0.53 -3.23 16 13 C 0.16 2.15 5.66 -5.19 -0.03 2.12 16 14 N -0.71 -8.37 5.50 -62.47 -0.34 -8.72 16 15 C 0.56 6.81 7.77 -12.38 -0.10 6.71 16 16 O -0.54 -8.24 16.34 5.30 0.09 -8.16 16 17 C -0.13 -1.24 5.87 -104.97 -0.62 -1.85 16 18 C -0.03 -0.23 9.59 -39.19 -0.38 -0.60 16 19 C -0.15 -1.05 10.01 -39.58 -0.40 -1.44 16 20 C 0.13 1.12 7.28 -39.25 -0.29 0.84 16 21 F -0.12 -1.12 16.83 2.25 0.04 -1.08 16 22 C -0.08 -0.74 6.32 -39.49 -0.25 -0.99 16 23 Cl -0.04 -0.36 28.60 -51.86 -1.48 -1.85 16 24 C -0.05 -0.43 9.31 -39.16 -0.36 -0.79 16 25 C -0.09 -1.47 5.95 -28.09 -0.17 -1.64 16 26 C 0.14 2.81 6.59 -3.43 -0.02 2.79 16 27 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 30 H 0.09 1.51 7.73 -52.49 -0.41 1.11 16 31 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 32 H 0.07 0.98 8.11 -51.93 -0.42 0.55 16 33 H 0.40 4.06 6.49 -40.82 -0.26 3.80 16 34 H 0.15 1.16 7.65 -52.49 -0.40 0.76 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 1.10 6.40 -52.49 -0.34 0.76 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -30.17 356.59 -9.64 -39.80 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.64 Total: 1.22 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.73 Total: -3.07 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.25 Total: -48.53 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.17 -9.64 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001105530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.713 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds