Wall clock time and date at job start Tue Mar 31 2020 20:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47344 * 274.45660 * 3 2 1 5 5 H 1.48501 * 109.46971 * 34.45840 * 3 2 1 6 6 H 1.48499 * 109.47130 * 154.45583 * 3 2 1 7 7 C 1.38816 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00214 * 164.49187 * 7 2 1 9 9 N 1.36936 * 119.99627 * 344.49529 * 7 2 1 10 10 C 1.47009 * 121.37430 * 335.97998 * 9 7 2 11 11 C 1.50328 * 109.16356 * 222.96902 * 10 9 7 12 12 C 1.29456 * 123.65013 * 349.02070 * 11 10 9 13 13 C 1.50698 * 117.69241 * 180.86017 * 12 11 10 14 14 N 1.46504 * 109.47168 * 94.99972 * 13 12 11 15 15 C 1.34773 * 119.99907 * 180.27273 * 14 13 12 16 16 O 1.21570 * 120.00243 * 359.72826 * 15 14 13 17 17 C 1.47730 * 119.99755 * 179.72559 * 15 14 13 18 18 C 1.39668 * 120.10914 * 180.02562 * 17 15 14 19 19 C 1.37838 * 119.90091 * 180.02562 * 18 17 15 20 20 C 1.38640 * 120.13458 * 0.02562 * 19 18 17 21 21 F 1.35098 * 119.88704 * 179.97438 * 20 19 18 22 22 C 1.38746 * 120.22810 * 0.02562 * 20 19 18 23 23 Cl 1.73593 * 119.95246 * 179.97438 * 22 20 19 24 24 C 1.37969 * 120.09507 * 359.67507 * 22 20 19 25 25 C 1.49966 * 124.61113 * 1.13607 * 12 11 10 26 26 C 1.47340 * 121.37729 * 155.99710 * 9 7 2 27 27 H 0.96998 * 120.00118 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.52293 * 103.06421 * 10 9 7 29 29 H 1.09001 * 109.52469 * 342.87150 * 10 9 7 30 30 H 1.07996 * 118.17364 * 169.00213 * 11 10 9 31 31 H 1.08997 * 109.47609 * 335.00023 * 13 12 11 32 32 H 1.09000 * 109.46888 * 214.99831 * 13 12 11 33 33 H 0.97002 * 120.00160 * 0.02562 * 14 13 12 34 34 H 1.07995 * 120.04923 * 0.02562 * 18 17 15 35 35 H 1.07999 * 119.93321 * 180.02562 * 19 18 17 36 36 H 1.07990 * 120.06892 * 180.31958 * 24 22 20 37 37 H 1.09003 * 109.31592 * 101.01042 * 25 12 11 38 38 H 1.08997 * 109.31925 * 220.43693 * 25 12 11 39 39 H 1.09003 * 109.77972 * 237.79174 * 26 9 7 40 40 H 1.08998 * 109.77360 * 358.59884 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1009 -1.3958 5 1 1.4978 2.6236 0.7922 6 1 3.5916 1.4149 0.6037 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2190 -0.2506 9 7 1.3631 -2.3666 0.3160 10 6 0.1447 -2.3658 1.1387 11 6 0.2252 -3.4835 2.1408 12 6 1.1210 -4.4174 2.1033 13 6 1.0648 -5.4847 3.1657 14 7 0.3209 -6.6403 2.6581 15 6 0.1374 -7.7209 3.4422 16 8 0.5934 -7.7388 4.5691 17 6 -0.6179 -8.8837 2.9325 18 6 -0.8099 -10.0046 3.7433 19 6 -1.5149 -11.0874 3.2632 20 6 -2.0329 -11.0659 1.9773 21 9 -2.7226 -12.1302 1.5116 22 6 -1.8445 -9.9557 1.1668 23 17 -2.4956 -9.9368 -0.4423 24 6 -1.1456 -8.8643 1.6400 25 6 2.2142 -4.5086 1.0808 26 6 1.8591 -3.6721 -0.1537 27 1 -0.4850 0.8400 0.0004 28 1 -0.7264 -2.5114 0.4998 29 1 0.0589 -1.4133 1.6617 30 1 -0.5047 -3.5086 2.9363 31 1 0.5647 -5.0909 4.0504 32 1 2.0778 -5.7909 3.4270 33 1 -0.0426 -6.6262 1.7589 34 1 -0.4067 -10.0229 4.7450 35 1 -1.6640 -11.9542 3.8898 36 1 -1.0037 -7.9983 1.0105 37 1 3.1447 -4.1415 1.5140 38 1 2.3441 -5.5492 0.7837 39 1 1.0846 -4.1740 -0.7337 40 1 2.7475 -3.5294 -0.7688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001105530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:09 Heat of formation + Delta-G solvation = -37.639369 kcal Electronic energy + Delta-G solvation = -25628.377561 eV Core-core repulsion = 21576.677286 eV Total energy + Delta-G solvation = -4051.700275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.16846 -41.39704 -39.73394 -39.10468 -37.62541 -36.47352 -34.65596 -32.93769 -32.08680 -31.79176 -31.35362 -28.56495 -26.18931 -24.83327 -24.39010 -24.02355 -22.79034 -21.73229 -19.74064 -19.39098 -18.63410 -18.00792 -17.40415 -17.02974 -16.95985 -16.76923 -16.45734 -16.30958 -15.76640 -15.42745 -15.26157 -15.18869 -14.93269 -14.56774 -14.48724 -14.09472 -13.99037 -13.92657 -13.60592 -13.26107 -12.93311 -12.80044 -12.60773 -12.58424 -12.56503 -12.23722 -12.18232 -12.09976 -11.70175 -11.33920 -11.18103 -10.68225 -10.32224 -10.17357 -9.86934 -9.65830 -8.74224 -7.88322 -5.29058 -0.61067 -0.14860 0.83037 1.16178 1.46779 1.48815 1.52792 1.58076 2.27340 2.47891 2.51501 2.81631 3.29156 3.41141 3.50448 3.63199 3.82535 3.87393 3.98179 3.99922 4.24243 4.45084 4.53242 4.55237 4.61832 4.66004 4.75341 4.84670 4.85827 4.93079 5.03831 5.11270 5.22457 5.28192 5.40675 5.42307 5.49667 5.62166 5.77370 6.17172 6.34418 6.42433 7.05855 7.14211 7.84442 8.37574 9.20197 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.002321 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.734683 B =12062.396010 C =13038.693898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.204 3.796 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.167 3.833 14 N -0.707 5.707 15 C 0.561 3.439 16 O -0.569 6.569 17 C -0.138 4.138 18 C -0.025 4.025 19 C -0.135 4.135 20 C 0.127 3.873 21 F -0.126 7.126 22 C -0.091 4.091 23 Cl -0.046 7.046 24 C -0.045 4.045 25 C -0.085 4.085 26 C 0.138 3.862 27 H 0.249 0.751 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.029 0.971 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -24.319 5.355 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.160 4.160 12 C -0.141 4.141 13 C 0.044 3.956 14 N -0.358 5.358 15 C 0.349 3.651 16 O -0.450 6.450 17 C -0.142 4.142 18 C -0.044 4.044 19 C -0.154 4.154 20 C 0.106 3.894 21 F -0.104 7.104 22 C -0.119 4.119 23 Cl -0.017 7.017 24 C -0.064 4.064 25 C -0.123 4.123 26 C 0.013 3.987 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.179 0.821 35 H 0.199 0.801 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.412 -24.199 5.963 25.156 hybrid contribution -0.279 1.222 -0.917 1.553 sum -3.691 -22.977 5.046 23.813 Atomic orbital electron populations 1.70158 1.06458 1.25744 1.56206 1.25716 0.96152 1.01269 1.01746 0.85279 0.78136 0.79822 0.77339 1.21326 1.21990 1.19583 1.19505 0.92550 0.85634 1.40907 0.91242 1.44417 1.29442 1.02160 1.57948 1.19412 0.87682 0.95016 0.89986 1.22972 0.98142 0.96059 0.98858 1.20603 0.98296 0.96655 0.98594 1.20306 0.96819 0.83867 0.94581 1.45992 1.55730 1.15669 1.18398 1.18268 0.79466 0.82670 0.84707 1.90784 1.51825 1.82183 1.20228 1.19877 1.03128 0.96145 0.95036 1.21415 0.92799 0.89736 1.00413 1.21384 0.99080 1.01554 0.93367 1.17873 0.94685 0.83491 0.93304 1.91563 1.76452 1.53628 1.88794 1.20945 1.05094 0.96587 0.89261 1.98420 1.84682 1.98543 1.20036 1.21232 0.93289 0.97205 0.94666 1.20733 0.96328 1.00365 0.94910 1.21189 0.97356 0.85785 0.94411 0.94146 0.96802 0.92543 0.86796 0.91432 0.90680 0.75197 0.82083 0.80068 0.82288 0.91753 0.89276 0.95304 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.62 11.08 21.65 0.24 -54.38 16 2 C -0.05 -2.98 5.01 84.86 0.43 -2.55 16 3 Si 0.97 44.49 29.58 68.60 2.03 46.52 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.26 -13.82 9.71 84.03 0.82 -13.00 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.62 -29.93 3.01 -703.00 -2.11 -32.04 16 10 C 0.20 9.52 5.23 85.42 0.45 9.97 16 11 C -0.14 -4.92 9.47 27.11 0.26 -4.66 16 12 C -0.14 -4.20 5.22 -15.14 -0.08 -4.28 16 13 C 0.17 4.16 5.66 85.63 0.48 4.64 16 14 N -0.71 -14.84 5.50 -469.82 -2.58 -17.42 16 15 C 0.56 12.51 7.77 86.75 0.67 13.19 16 16 O -0.57 -16.47 16.34 -3.94 -0.06 -16.54 16 17 C -0.14 -2.35 5.87 -20.09 -0.12 -2.47 16 18 C -0.02 -0.34 9.59 22.52 0.22 -0.13 16 19 C -0.14 -1.50 10.01 22.27 0.22 -1.28 16 20 C 0.13 1.89 7.28 22.49 0.16 2.05 16 21 F -0.13 -2.07 16.83 44.97 0.76 -1.31 16 22 C -0.09 -1.47 6.32 22.33 0.14 -1.33 16 23 Cl -0.05 -0.79 28.60 -2.72 -0.08 -0.87 16 24 C -0.04 -0.68 9.31 22.54 0.21 -0.47 16 25 C -0.08 -2.55 5.95 29.71 0.18 -2.37 16 26 C 0.14 5.26 6.59 86.32 0.57 5.83 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 3.02 6.41 -2.39 -0.02 3.00 16 30 H 0.11 3.55 7.73 -2.91 -0.02 3.52 16 31 H 0.07 1.76 7.78 -2.39 -0.02 1.74 16 32 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 33 H 0.41 7.20 6.49 -92.71 -0.60 6.59 16 34 H 0.16 2.03 7.65 -2.91 -0.02 2.00 16 35 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 36 H 0.16 1.99 6.40 -2.92 -0.02 1.97 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16 Total: -1.00 -66.11 356.59 3.28 -62.83 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.49 Total: 10.07 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.61 Total: 3.14 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.46 Total: -103.84 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.06 Total: -16.54 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.76 Total: -1.31 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -66.11 3.28 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001105530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.189 kcal (2) G-P(sol) polarization free energy of solvation -66.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds