Wall clock time and date at job start Tue Mar 31 2020 20:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00014 * 3 2 1 5 5 H 1.48505 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47003 * 120.00509 * 3 2 1 7 7 C 1.38813 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00404 * 164.51733 * 7 2 1 9 9 N 1.36943 * 119.99580 * 344.52493 * 7 2 1 10 10 C 1.47013 * 121.37171 * 335.96044 * 9 7 2 11 11 C 1.50319 * 109.16349 * 222.97160 * 10 9 7 12 12 C 1.29447 * 123.65536 * 349.02306 * 11 10 9 13 13 C 1.50701 * 117.69678 * 180.85384 * 12 11 10 14 14 N 1.46510 * 109.46649 * 95.00465 * 13 12 11 15 15 C 1.34777 * 119.99531 * 180.27838 * 14 13 12 16 16 O 1.21554 * 120.00397 * 359.71881 * 15 14 13 17 17 C 1.47774 * 119.99572 * 179.72542 * 15 14 13 18 18 C 1.39634 * 120.14383 * 359.72061 * 17 15 14 19 19 C 1.37904 * 119.91544 * 179.76615 * 18 17 15 20 20 C 1.38395 * 120.20485 * 0.51173 * 19 18 17 21 21 C 1.38465 * 120.29425 * 359.74440 * 20 19 18 22 22 F 1.35100 * 119.96235 * 179.97438 * 21 20 19 23 23 C 1.38383 * 120.07997 * 359.97438 * 21 20 19 24 24 Cl 1.73600 * 120.10667 * 180.02562 * 23 21 20 25 25 C 1.49973 * 124.61034 * 1.14496 * 12 11 10 26 26 C 1.47333 * 121.37511 * 155.99156 * 9 7 2 27 27 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.51482 * 103.06530 * 10 9 7 29 29 H 1.08993 * 109.52507 * 342.88542 * 10 9 7 30 30 H 1.07999 * 118.17041 * 169.00440 * 11 10 9 31 31 H 1.08993 * 109.47105 * 335.00851 * 13 12 11 32 32 H 1.08998 * 109.47194 * 215.00303 * 13 12 11 33 33 H 0.96998 * 120.00080 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.04193 * 0.02562 * 18 17 15 35 35 H 1.07990 * 119.89662 * 180.25132 * 19 18 17 36 36 H 1.08000 * 119.85546 * 179.76031 * 20 19 18 37 37 H 1.08998 * 109.31837 * 101.00621 * 25 12 11 38 38 H 1.08999 * 109.31348 * 220.43170 * 25 12 11 39 39 H 1.08999 * 109.77642 * 237.78208 * 26 9 7 40 40 H 1.08993 * 109.78173 * 358.59315 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2502 9 7 1.3629 -2.3667 0.3154 10 6 0.1444 -2.3661 1.1380 11 6 0.2247 -3.4841 2.1396 12 6 1.1203 -4.4180 2.1021 13 6 1.0639 -5.4856 3.1641 14 7 0.3200 -6.6410 2.6560 15 6 0.1362 -7.7219 3.4398 16 8 0.5920 -7.7402 4.5666 17 6 -0.6192 -8.8848 2.9294 18 6 -1.1489 -8.8647 1.6376 19 6 -1.8490 -9.9545 1.1643 20 6 -2.0374 -11.0642 1.9696 21 6 -1.5205 -11.0912 3.2538 22 9 -1.7089 -12.1778 4.0343 23 6 -0.8111 -10.0066 3.7389 24 17 -0.1621 -10.0400 5.3486 25 6 2.2139 -4.5089 1.0798 26 6 1.8591 -3.6720 -0.1545 27 1 -0.4850 0.8401 0.0004 28 1 -0.7265 -2.5114 0.4988 29 1 0.0585 -1.4138 1.6611 30 1 -0.5055 -3.5094 2.9350 31 1 0.5635 -5.0919 4.0488 32 1 2.0767 -5.7919 3.4256 33 1 -0.0433 -6.6266 1.7567 34 1 -1.0069 -7.9985 1.0084 35 1 -2.2550 -9.9403 0.1638 36 1 -2.5899 -11.9131 1.5945 37 1 3.1442 -4.1420 1.5134 38 1 2.3437 -5.5495 0.7824 39 1 1.0847 -4.1737 -0.7348 40 1 2.7476 -3.5293 -0.7693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001193755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:55 Heat of formation + Delta-G solvation = -10.307606 kcal Electronic energy + Delta-G solvation = -25811.333751 eV Core-core repulsion = 21760.818670 eV Total energy + Delta-G solvation = -4050.515081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.37461 -40.45533 -38.67730 -37.71450 -36.71492 -35.04665 -33.09138 -31.77695 -31.05115 -30.64813 -29.75319 -27.10892 -24.91751 -23.77650 -23.10787 -22.77104 -21.21166 -20.81837 -18.90742 -17.69176 -17.17149 -16.94322 -16.62554 -16.23493 -15.71595 -15.68626 -15.33993 -14.97425 -14.77990 -14.24180 -13.93516 -13.79850 -13.72549 -13.44949 -13.28201 -12.83538 -12.69041 -12.28736 -12.15028 -12.08800 -11.85488 -11.63870 -11.46101 -11.33833 -10.94661 -10.76859 -10.45549 -10.37131 -9.88341 -9.78420 -9.64295 -9.55383 -9.16864 -9.02542 -8.73203 -8.13144 -6.80501 -5.84908 -3.23904 0.16138 0.48118 1.75530 2.45229 2.45952 3.22791 3.27309 3.35995 3.41875 3.43212 3.69981 4.15931 4.24436 4.41145 4.45298 4.64282 4.90689 5.06012 5.24939 5.29311 5.34399 5.34606 5.46521 5.53305 5.66737 5.76260 5.88408 6.00657 6.08769 6.10391 6.26150 6.34135 6.45489 6.66775 6.80323 7.09577 7.18953 7.25192 7.43153 7.66972 7.76448 8.07694 8.32805 9.14234 9.76870 10.34373 11.25555 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.002216 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.559660 B =12631.933512 C =13151.195151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.000 4.000 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.122 4.122 12 C -0.168 4.168 13 C 0.159 3.841 14 N -0.712 5.712 15 C 0.548 3.452 16 O -0.515 6.515 17 C -0.098 4.098 18 C -0.085 4.085 19 C -0.093 4.093 20 C -0.121 4.121 21 C 0.098 3.902 22 F -0.124 7.124 23 C -0.029 4.029 24 Cl -0.010 7.010 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.255 0.745 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -22.089 2.947 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.198 4.198 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.143 4.143 12 C -0.169 4.169 13 C 0.036 3.964 14 N -0.364 5.364 15 C 0.333 3.667 16 O -0.391 6.391 17 C -0.102 4.102 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.140 4.140 21 C 0.078 3.922 22 F -0.103 7.103 23 C -0.058 4.058 24 Cl 0.019 6.981 25 C -0.130 4.130 26 C 0.018 3.982 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.673 -21.944 3.948 22.781 hybrid contribution 0.163 0.651 -0.100 0.678 sum -4.511 -21.293 3.848 22.103 Atomic orbital electron populations 1.69990 1.05180 1.25702 1.54642 1.24986 0.95404 0.98321 1.01123 0.86321 0.78837 0.83202 0.78128 1.20901 1.21609 1.21045 1.19140 0.92233 0.84344 1.41980 0.91382 1.44121 1.29215 1.01224 1.57267 1.19769 0.88817 0.94801 0.89763 1.23313 0.95773 0.96581 0.98600 1.20490 1.00057 0.97267 0.99100 1.20507 0.96177 0.84024 0.95645 1.46108 1.56293 1.16148 1.17837 1.17966 0.80627 0.82446 0.85638 1.90880 1.49097 1.80970 1.18202 1.19771 1.01445 0.94454 0.94529 1.21470 0.95777 0.99372 0.93751 1.21099 0.97613 0.91938 1.00449 1.21352 1.00358 1.00612 0.91666 1.17306 1.00739 0.83922 0.90233 1.91561 1.93332 1.51479 1.73903 1.21092 0.99921 0.94500 0.90304 1.98442 1.83767 1.98160 1.17695 1.20797 0.96606 0.99027 0.96527 1.20985 0.97339 0.87184 0.92735 0.93511 0.94050 0.88836 0.88717 0.91350 0.91264 0.76429 0.83748 0.83464 0.83332 0.91654 0.92903 0.95896 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.51 11.08 55.49 0.61 -24.90 16 2 C 0.00 -0.01 5.01 -17.43 -0.09 -0.10 16 3 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.59 9.71 -15.06 -0.15 -6.74 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -14.25 3.01 -173.57 -0.52 -14.77 16 10 C 0.19 4.36 5.23 -5.10 -0.03 4.34 16 11 C -0.12 -2.18 9.47 -35.78 -0.34 -2.52 16 12 C -0.17 -2.69 5.22 -100.99 -0.53 -3.22 16 13 C 0.16 2.22 5.66 -5.19 -0.03 2.19 16 14 N -0.71 -8.55 5.50 -62.45 -0.34 -8.90 16 15 C 0.55 7.21 7.76 -12.36 -0.10 7.12 16 16 O -0.52 -8.40 13.97 5.32 0.07 -8.32 16 17 C -0.10 -1.05 5.88 -104.95 -0.62 -1.67 16 18 C -0.08 -0.64 9.54 -39.18 -0.37 -1.01 16 19 C -0.09 -0.54 10.03 -39.65 -0.40 -0.93 16 20 C -0.12 -0.80 10.02 -39.44 -0.40 -1.19 16 21 C 0.10 0.94 7.27 -39.44 -0.29 0.65 16 22 F -0.12 -1.27 16.83 2.25 0.04 -1.23 16 23 C -0.03 -0.33 6.36 -39.00 -0.25 -0.58 16 24 Cl -0.01 -0.13 25.68 -51.86 -1.33 -1.47 16 25 C -0.09 -1.47 5.95 -28.09 -0.17 -1.64 16 26 C 0.14 2.80 6.59 -3.44 -0.02 2.78 16 27 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 2.38 6.41 -51.93 -0.33 2.05 16 30 H 0.09 1.52 7.73 -52.49 -0.41 1.12 16 31 H 0.07 1.00 7.78 -51.93 -0.40 0.60 16 32 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 33 H 0.40 3.98 6.50 -40.82 -0.27 3.71 16 34 H 0.14 0.81 6.40 -52.49 -0.34 0.47 16 35 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -30.90 352.41 -9.61 -40.51 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.66 Total: 0.03 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.76 Total: -2.52 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.25 Total: -48.57 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.33 Total: -1.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.90 -9.61 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001193755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.205 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds