Wall clock time and date at job start Tue Mar 31 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00014 * 3 2 1 5 5 H 1.48505 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47003 * 120.00509 * 3 2 1 7 7 C 1.38813 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00404 * 164.51733 * 7 2 1 9 9 N 1.36943 * 119.99580 * 344.52493 * 7 2 1 10 10 C 1.47013 * 121.37171 * 335.96044 * 9 7 2 11 11 C 1.50319 * 109.16349 * 222.97160 * 10 9 7 12 12 C 1.29447 * 123.65536 * 349.02306 * 11 10 9 13 13 C 1.50701 * 117.69678 * 180.85384 * 12 11 10 14 14 N 1.46510 * 109.46649 * 95.00465 * 13 12 11 15 15 C 1.34777 * 119.99531 * 180.27838 * 14 13 12 16 16 O 1.21554 * 120.00397 * 359.71881 * 15 14 13 17 17 C 1.47774 * 119.99572 * 179.72542 * 15 14 13 18 18 C 1.39634 * 120.14383 * 359.72061 * 17 15 14 19 19 C 1.37904 * 119.91544 * 179.76615 * 18 17 15 20 20 C 1.38395 * 120.20485 * 0.51173 * 19 18 17 21 21 C 1.38465 * 120.29425 * 359.74440 * 20 19 18 22 22 F 1.35100 * 119.96235 * 179.97438 * 21 20 19 23 23 C 1.38383 * 120.07997 * 359.97438 * 21 20 19 24 24 Cl 1.73600 * 120.10667 * 180.02562 * 23 21 20 25 25 C 1.49973 * 124.61034 * 1.14496 * 12 11 10 26 26 C 1.47333 * 121.37511 * 155.99156 * 9 7 2 27 27 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.51482 * 103.06530 * 10 9 7 29 29 H 1.08993 * 109.52507 * 342.88542 * 10 9 7 30 30 H 1.07999 * 118.17041 * 169.00440 * 11 10 9 31 31 H 1.08993 * 109.47105 * 335.00851 * 13 12 11 32 32 H 1.08998 * 109.47194 * 215.00303 * 13 12 11 33 33 H 0.96998 * 120.00080 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.04193 * 0.02562 * 18 17 15 35 35 H 1.07990 * 119.89662 * 180.25132 * 19 18 17 36 36 H 1.08000 * 119.85546 * 179.76031 * 20 19 18 37 37 H 1.08998 * 109.31837 * 101.00621 * 25 12 11 38 38 H 1.08999 * 109.31348 * 220.43170 * 25 12 11 39 39 H 1.08999 * 109.77642 * 237.78208 * 26 9 7 40 40 H 1.08993 * 109.78173 * 358.59315 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2502 9 7 1.3629 -2.3667 0.3154 10 6 0.1444 -2.3661 1.1380 11 6 0.2247 -3.4841 2.1396 12 6 1.1203 -4.4180 2.1021 13 6 1.0639 -5.4856 3.1641 14 7 0.3200 -6.6410 2.6560 15 6 0.1362 -7.7219 3.4398 16 8 0.5920 -7.7402 4.5666 17 6 -0.6192 -8.8848 2.9294 18 6 -1.1489 -8.8647 1.6376 19 6 -1.8490 -9.9545 1.1643 20 6 -2.0374 -11.0642 1.9696 21 6 -1.5205 -11.0912 3.2538 22 9 -1.7089 -12.1778 4.0343 23 6 -0.8111 -10.0066 3.7389 24 17 -0.1621 -10.0400 5.3486 25 6 2.2139 -4.5089 1.0798 26 6 1.8591 -3.6720 -0.1545 27 1 -0.4850 0.8401 0.0004 28 1 -0.7265 -2.5114 0.4988 29 1 0.0585 -1.4138 1.6611 30 1 -0.5055 -3.5094 2.9350 31 1 0.5635 -5.0919 4.0488 32 1 2.0767 -5.7919 3.4256 33 1 -0.0433 -6.6266 1.7567 34 1 -1.0069 -7.9985 1.0084 35 1 -2.2550 -9.9403 0.1638 36 1 -2.5899 -11.9131 1.5945 37 1 3.1442 -4.1420 1.5134 38 1 2.3437 -5.5495 0.7824 39 1 1.0847 -4.1737 -0.7348 40 1 2.7476 -3.5293 -0.7693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001193755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:54 Heat of formation + Delta-G solvation = -28.133073 kcal Electronic energy + Delta-G solvation = -25812.106721 eV Core-core repulsion = 21760.818670 eV Total energy + Delta-G solvation = -4051.288051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.08438 -41.34044 -39.67952 -39.02048 -37.55678 -36.42200 -34.60943 -32.93090 -32.11450 -31.55135 -31.32123 -28.58211 -26.26803 -24.91028 -24.30413 -23.74980 -22.78977 -21.76948 -19.80798 -19.39021 -17.97539 -17.70780 -17.51042 -17.16072 -16.96883 -16.90306 -16.64513 -16.25913 -15.74373 -15.40019 -15.31038 -15.20448 -14.88177 -14.53435 -14.48571 -14.00138 -13.87283 -13.51539 -13.25700 -13.22171 -12.89281 -12.81004 -12.75093 -12.59461 -12.57430 -12.29687 -12.23173 -12.07554 -11.69026 -11.24662 -10.77729 -10.65916 -10.31897 -10.00128 -9.83989 -9.64276 -8.72954 -7.87355 -5.27945 -0.51769 -0.14560 0.95971 1.17052 1.47905 1.50577 1.56532 1.67848 2.21770 2.51099 2.52263 2.99890 3.29920 3.47041 3.63043 3.69240 3.77263 3.89339 3.99090 4.09249 4.32324 4.45904 4.56569 4.57453 4.69670 4.76782 4.78522 4.86594 4.94476 4.99908 5.12112 5.13490 5.24265 5.31490 5.42775 5.50956 5.55988 5.62992 5.78746 6.18052 6.35520 6.47258 7.12089 7.15365 7.85827 8.38630 9.20876 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.002216 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.559660 B =12631.933512 C =13151.195151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.139 4.139 12 C -0.139 4.139 13 C 0.169 3.831 14 N -0.702 5.702 15 C 0.547 3.453 16 O -0.553 6.553 17 C -0.118 4.118 18 C -0.076 4.076 19 C -0.077 4.077 20 C -0.105 4.105 21 C 0.082 3.918 22 F -0.134 7.134 23 C -0.051 4.051 24 Cl -0.041 7.041 25 C -0.085 4.085 26 C 0.139 3.861 27 H 0.250 0.750 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.181 0.819 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.102 -23.973 1.294 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.160 4.160 12 C -0.139 4.139 13 C 0.046 3.954 14 N -0.354 5.354 15 C 0.334 3.666 16 O -0.432 6.432 17 C -0.122 4.122 18 C -0.095 4.095 19 C -0.095 4.095 20 C -0.123 4.123 21 C 0.061 3.939 22 F -0.112 7.112 23 C -0.080 4.080 24 Cl -0.012 7.012 25 C -0.123 4.123 26 C 0.014 3.986 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.251 0.749 34 H 0.185 0.815 35 H 0.206 0.794 36 H 0.198 0.802 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.782 -23.860 2.266 24.440 hybrid contribution 0.189 1.124 0.301 1.179 sum -4.593 -22.736 2.567 23.337 Atomic orbital electron populations 1.70144 1.06396 1.25815 1.56128 1.25695 0.96150 1.01198 1.01738 0.85374 0.77554 0.79517 0.78210 1.20064 1.22105 1.20832 1.19466 0.92536 0.85688 1.40999 0.91290 1.44405 1.29419 1.02188 1.57967 1.19407 0.87782 0.94873 0.89971 1.22960 0.98130 0.96054 0.98842 1.20574 0.98295 0.96559 0.98512 1.20254 0.96578 0.83964 0.94588 1.45878 1.55953 1.15273 1.18338 1.18331 0.80137 0.82982 0.85100 1.90864 1.50733 1.81736 1.19886 1.19642 1.03023 0.93443 0.96060 1.21799 0.94650 1.00743 0.92297 1.21590 0.95755 0.90403 1.01758 1.21799 0.98737 1.01813 0.89989 1.17593 1.01500 0.83361 0.91396 1.91536 1.93471 1.51789 1.74445 1.21306 1.01450 0.95885 0.89368 1.98421 1.84417 1.98287 1.20052 1.20739 0.96154 1.00475 0.94968 1.21185 0.97453 0.85676 0.94297 0.94136 0.96507 0.92681 0.87009 0.91893 0.91123 0.74943 0.81534 0.79356 0.80181 0.92044 0.89156 0.94888 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.11 11.08 21.65 0.24 -53.87 16 2 C -0.05 -2.90 5.01 84.86 0.43 -2.47 16 3 Si 0.96 44.29 29.58 68.60 2.03 46.32 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.26 -13.76 9.71 84.03 0.82 -12.95 16 8 H 0.07 3.59 7.88 -2.92 -0.02 3.57 16 9 N -0.62 -29.56 3.01 -703.05 -2.11 -31.67 16 10 C 0.20 9.44 5.23 85.42 0.45 9.89 16 11 C -0.14 -4.89 9.47 27.11 0.26 -4.63 16 12 C -0.14 -4.15 5.22 -15.13 -0.08 -4.23 16 13 C 0.17 4.39 5.66 85.63 0.48 4.87 16 14 N -0.70 -15.17 5.50 -469.77 -2.58 -17.76 16 15 C 0.55 13.71 7.76 86.77 0.67 14.39 16 16 O -0.55 -18.01 13.97 -3.89 -0.05 -18.07 16 17 C -0.12 -2.32 5.88 -20.08 -0.12 -2.44 16 18 C -0.08 -0.85 9.54 22.53 0.21 -0.63 16 19 C -0.08 -0.50 10.03 22.23 0.22 -0.28 16 20 C -0.10 -0.96 10.02 22.36 0.22 -0.74 16 21 C 0.08 1.42 7.27 22.36 0.16 1.58 16 22 F -0.13 -2.64 16.83 44.97 0.76 -1.88 16 23 C -0.05 -1.13 6.36 22.65 0.14 -0.99 16 24 Cl -0.04 -1.11 25.68 -2.72 -0.07 -1.18 16 25 C -0.08 -2.52 5.95 29.72 0.18 -2.35 16 26 C 0.14 5.18 6.59 86.32 0.57 5.75 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 2.93 6.41 -2.39 -0.02 2.92 16 30 H 0.11 3.52 7.73 -2.91 -0.02 3.49 16 31 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 32 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.41 6.78 6.50 -92.71 -0.60 6.17 16 34 H 0.17 1.06 6.40 -2.91 -0.02 1.04 16 35 H 0.19 -0.22 8.06 -2.92 -0.02 -0.24 16 36 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.12 7.96 -2.39 -0.02 2.10 16 Total: -1.00 -70.65 352.41 3.31 -67.33 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.49 Total: 6.00 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.62 Total: 4.77 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -4.46 Total: -103.30 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.76 Total: -1.88 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.07 Total: -1.18 kcal Total: -70.65 3.31 -67.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001193755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.200 kcal (2) G-P(sol) polarization free energy of solvation -70.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds