Wall clock time and date at job start Tue Mar 31 2020 20:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47102 * 274.45608 * 3 2 1 5 5 H 1.48501 * 109.47081 * 34.45278 * 3 2 1 6 6 H 1.48495 * 109.47451 * 154.45544 * 3 2 1 7 7 C 1.38820 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99397 * 164.49332 * 7 2 1 9 9 N 1.36932 * 120.00223 * 344.49837 * 7 2 1 10 10 C 1.47002 * 121.37584 * 335.97714 * 9 7 2 11 11 C 1.50324 * 109.16507 * 222.97095 * 10 9 7 12 12 C 1.29447 * 123.65210 * 349.01855 * 11 10 9 13 13 C 1.50700 * 117.69654 * 180.86305 * 12 11 10 14 14 N 1.46493 * 109.47646 * 94.99925 * 13 12 11 15 15 C 1.34776 * 120.00431 * 180.02562 * 14 13 12 16 16 O 1.21561 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.47774 * 119.99966 * 180.02562 * 15 14 13 18 18 C 1.39602 * 120.14435 * 359.72561 * 17 15 14 19 19 C 1.38127 * 119.84008 * 179.74598 * 18 17 15 20 20 F 1.35096 * 119.93784 * 180.25224 * 19 18 17 21 21 C 1.38631 * 120.12413 * 0.52744 * 19 18 17 22 22 C 1.38244 * 120.29487 * 359.72242 * 21 19 18 23 23 C 1.38150 * 120.15593 * 0.02562 * 22 21 19 24 24 Cl 1.73601 * 120.06420 * 179.97438 * 23 22 21 25 25 C 1.49968 * 124.61050 * 1.14029 * 12 11 10 26 26 C 1.47343 * 121.37531 * 155.99755 * 9 7 2 27 27 H 0.96999 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52191 * 103.06007 * 10 9 7 29 29 H 1.09002 * 109.52028 * 342.87320 * 10 9 7 30 30 H 1.08002 * 118.17336 * 168.99983 * 11 10 9 31 31 H 1.08999 * 109.46882 * 215.00349 * 13 12 11 32 32 H 1.09006 * 109.46976 * 334.99453 * 13 12 11 33 33 H 0.97004 * 119.99584 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.08242 * 359.97017 * 18 17 15 35 35 H 1.08004 * 119.85064 * 179.70440 * 21 19 18 36 36 H 1.07989 * 119.91983 * 179.97438 * 22 21 19 37 37 H 1.09006 * 109.31393 * 101.00852 * 25 12 11 38 38 H 1.09000 * 109.31539 * 220.43525 * 25 12 11 39 39 H 1.08995 * 109.77607 * 237.78902 * 26 9 7 40 40 H 1.09001 * 109.77788 * 358.59810 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1007 -1.3959 5 1 1.4979 2.6236 0.7921 6 1 3.5916 1.4148 0.6037 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2495 9 7 1.3629 -2.3664 0.3180 10 6 0.1447 -2.3649 1.1407 11 6 0.2252 -3.4818 2.1437 12 6 1.1208 -4.4156 2.1070 13 6 1.0646 -5.4821 3.1703 14 7 0.3208 -6.6381 2.6637 15 6 0.1415 -7.7201 3.4470 16 8 0.5975 -7.7370 4.5737 17 6 -0.6084 -8.8863 2.9357 18 6 -1.1373 -8.8682 1.6439 19 6 -1.8326 -9.9638 1.1705 20 9 -2.3409 -9.9504 -0.0811 21 6 -2.0148 -11.0748 1.9794 22 6 -1.4978 -11.0965 3.2613 23 6 -0.7959 -10.0093 3.7450 24 17 -0.1483 -10.0388 5.3554 25 6 2.2141 -4.5077 1.0846 26 6 1.8590 -3.6723 -0.1505 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7264 -2.5110 0.5019 29 1 0.0590 -1.4120 1.6628 30 1 -0.5048 -3.5062 2.9393 31 1 2.0775 -5.7881 3.4318 32 1 0.5645 -5.0874 4.0548 33 1 -0.0428 -6.6247 1.7645 34 1 -1.0000 -8.0011 1.0149 35 1 -2.5633 -11.9272 1.6064 36 1 -1.6436 -11.9650 3.8863 37 1 3.1445 -4.1403 1.5176 38 1 2.3439 -5.5486 0.7884 39 1 1.0845 -4.1746 -0.7301 40 1 2.7474 -3.5302 -0.7658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001194197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:38 Heat of formation + Delta-G solvation = -12.069358 kcal Electronic energy + Delta-G solvation = -25854.623722 eV Core-core repulsion = 21804.032245 eV Total energy + Delta-G solvation = -4050.591476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.36179 -40.46538 -38.71030 -37.70527 -36.63825 -35.04449 -33.14855 -31.98101 -30.78664 -30.67085 -29.75081 -27.11360 -24.92303 -23.93666 -23.01005 -22.72004 -21.19013 -20.82700 -18.88357 -17.67363 -17.26750 -17.01968 -16.53728 -16.12997 -15.72535 -15.65242 -15.34865 -14.98676 -14.81739 -14.15063 -13.89636 -13.85300 -13.77469 -13.43073 -13.38242 -12.93781 -12.86835 -12.30363 -12.10658 -12.04696 -11.63330 -11.58575 -11.47412 -11.35246 -10.94966 -10.75770 -10.43852 -10.34962 -9.87017 -9.79095 -9.77289 -9.63374 -9.13638 -8.95942 -8.72418 -8.12194 -6.79113 -5.83907 -3.22634 0.14336 0.47570 1.80340 2.42686 2.47661 3.25154 3.29611 3.35554 3.42954 3.45316 3.65530 4.05600 4.19585 4.46236 4.51842 4.64764 4.94260 5.07770 5.12776 5.30027 5.32104 5.35781 5.44229 5.50178 5.56083 5.76730 5.88644 6.01842 6.09098 6.11325 6.27543 6.34171 6.46452 6.68074 6.81790 7.10714 7.19951 7.26149 7.42779 7.68215 7.77612 8.06696 8.33749 9.15275 9.77986 10.35666 11.26644 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.002412 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.217021 B =11604.116655 C =12549.427183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.122 4.122 12 C -0.169 4.169 13 C 0.159 3.841 14 N -0.713 5.713 15 C 0.548 3.452 16 O -0.514 6.514 17 C -0.096 4.096 18 C -0.111 4.111 19 C 0.099 3.901 20 F -0.130 7.130 21 C -0.120 4.120 22 C -0.092 4.092 23 C -0.001 4.001 24 Cl -0.022 7.022 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -23.370 5.291 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.037 3.963 14 N -0.364 5.364 15 C 0.334 3.666 16 O -0.390 6.390 17 C -0.100 4.100 18 C -0.130 4.130 19 C 0.080 3.920 20 F -0.108 7.108 21 C -0.139 4.139 22 C -0.110 4.110 23 C -0.029 4.029 24 Cl 0.008 6.992 25 C -0.129 4.129 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.265 -23.178 6.213 24.372 hybrid contribution 0.068 0.883 -0.562 1.049 sum -4.197 -22.295 5.652 23.380 Atomic orbital electron populations 1.70003 1.05188 1.25548 1.54741 1.24990 0.95401 0.98329 1.01176 0.86242 0.79138 0.83595 0.77596 1.21478 1.21546 1.20461 1.19180 0.92249 0.84343 1.41816 0.91352 1.44128 1.29235 1.01212 1.57263 1.19769 0.88828 0.94813 0.89748 1.23315 0.95733 0.96593 0.98600 1.20493 1.00094 0.97285 0.99105 1.20507 0.96163 0.84016 0.95653 1.46140 1.56260 1.16128 1.17919 1.17956 0.80606 0.82416 0.85652 1.90882 1.49001 1.81065 1.18093 1.19711 1.01270 0.95306 0.93701 1.21343 0.97595 0.98762 0.95331 1.17546 0.98091 0.95468 0.80939 1.91565 1.84910 1.96774 1.37556 1.21308 1.00795 0.98147 0.93667 1.20938 0.96834 0.97849 0.95424 1.21074 0.98301 0.94552 0.88970 1.98436 1.84067 1.98218 1.18499 1.20795 0.96605 0.99024 0.96523 1.20991 0.97358 0.87195 0.92746 0.93586 0.94050 0.88822 0.88710 0.91239 0.91318 0.76463 0.83220 0.83276 0.83219 0.91634 0.92921 0.95886 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.74 11.08 55.49 0.61 -25.13 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 3 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.63 9.71 -15.06 -0.15 -6.77 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 9 N -0.60 -14.46 3.01 -173.56 -0.52 -14.98 16 10 C 0.19 4.43 5.23 -5.10 -0.03 4.40 16 11 C -0.12 -2.22 9.47 -35.78 -0.34 -2.55 16 12 C -0.17 -2.76 5.22 -100.99 -0.53 -3.29 16 13 C 0.16 2.25 5.66 -5.20 -0.03 2.22 16 14 N -0.71 -8.82 5.50 -62.46 -0.34 -9.16 16 15 C 0.55 7.20 7.76 -12.36 -0.10 7.10 16 16 O -0.51 -8.18 13.96 5.31 0.07 -8.11 16 17 C -0.10 -1.03 5.88 -104.95 -0.62 -1.64 16 18 C -0.11 -0.99 9.52 -39.11 -0.37 -1.36 16 19 C 0.10 0.83 7.29 -39.48 -0.29 0.54 16 20 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 21 C -0.12 -0.78 10.02 -39.43 -0.39 -1.18 16 22 C -0.09 -0.65 9.82 -39.61 -0.39 -1.03 16 23 C 0.00 -0.01 6.35 -39.07 -0.25 -0.25 16 24 Cl -0.02 -0.25 26.02 -51.86 -1.35 -1.60 16 25 C -0.09 -1.50 5.95 -28.09 -0.17 -1.67 16 26 C 0.14 2.85 6.59 -3.43 -0.02 2.83 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 30 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 31 H 0.07 1.01 8.11 -51.93 -0.42 0.58 16 32 H 0.07 1.01 7.78 -51.93 -0.40 0.61 16 33 H 0.40 4.28 6.50 -40.82 -0.27 4.02 16 34 H 0.15 1.15 6.41 -52.49 -0.34 0.81 16 35 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -30.58 352.96 -9.61 -40.19 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.66 Total: 1.00 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.75 Total: -2.78 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.25 Total: -49.28 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.35 Total: -1.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.58 -9.61 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001194197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.117 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds