Wall clock time and date at job start Tue Mar 31 2020 20:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47102 * 274.45608 * 3 2 1 5 5 H 1.48501 * 109.47081 * 34.45278 * 3 2 1 6 6 H 1.48495 * 109.47451 * 154.45544 * 3 2 1 7 7 C 1.38820 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99397 * 164.49332 * 7 2 1 9 9 N 1.36932 * 120.00223 * 344.49837 * 7 2 1 10 10 C 1.47002 * 121.37584 * 335.97714 * 9 7 2 11 11 C 1.50324 * 109.16507 * 222.97095 * 10 9 7 12 12 C 1.29447 * 123.65210 * 349.01855 * 11 10 9 13 13 C 1.50700 * 117.69654 * 180.86305 * 12 11 10 14 14 N 1.46493 * 109.47646 * 94.99925 * 13 12 11 15 15 C 1.34776 * 120.00431 * 180.02562 * 14 13 12 16 16 O 1.21561 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.47774 * 119.99966 * 180.02562 * 15 14 13 18 18 C 1.39602 * 120.14435 * 359.72561 * 17 15 14 19 19 C 1.38127 * 119.84008 * 179.74598 * 18 17 15 20 20 F 1.35096 * 119.93784 * 180.25224 * 19 18 17 21 21 C 1.38631 * 120.12413 * 0.52744 * 19 18 17 22 22 C 1.38244 * 120.29487 * 359.72242 * 21 19 18 23 23 C 1.38150 * 120.15593 * 0.02562 * 22 21 19 24 24 Cl 1.73601 * 120.06420 * 179.97438 * 23 22 21 25 25 C 1.49968 * 124.61050 * 1.14029 * 12 11 10 26 26 C 1.47343 * 121.37531 * 155.99755 * 9 7 2 27 27 H 0.96999 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52191 * 103.06007 * 10 9 7 29 29 H 1.09002 * 109.52028 * 342.87320 * 10 9 7 30 30 H 1.08002 * 118.17336 * 168.99983 * 11 10 9 31 31 H 1.08999 * 109.46882 * 215.00349 * 13 12 11 32 32 H 1.09006 * 109.46976 * 334.99453 * 13 12 11 33 33 H 0.97004 * 119.99584 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.08242 * 359.97017 * 18 17 15 35 35 H 1.08004 * 119.85064 * 179.70440 * 21 19 18 36 36 H 1.07989 * 119.91983 * 179.97438 * 22 21 19 37 37 H 1.09006 * 109.31393 * 101.00852 * 25 12 11 38 38 H 1.09000 * 109.31539 * 220.43525 * 25 12 11 39 39 H 1.08995 * 109.77607 * 237.78902 * 26 9 7 40 40 H 1.09001 * 109.77788 * 358.59810 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1007 -1.3959 5 1 1.4979 2.6236 0.7921 6 1 3.5916 1.4148 0.6037 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2495 9 7 1.3629 -2.3664 0.3180 10 6 0.1447 -2.3649 1.1407 11 6 0.2252 -3.4818 2.1437 12 6 1.1208 -4.4156 2.1070 13 6 1.0646 -5.4821 3.1703 14 7 0.3208 -6.6381 2.6637 15 6 0.1415 -7.7201 3.4470 16 8 0.5975 -7.7370 4.5737 17 6 -0.6084 -8.8863 2.9357 18 6 -1.1373 -8.8682 1.6439 19 6 -1.8326 -9.9638 1.1705 20 9 -2.3409 -9.9504 -0.0811 21 6 -2.0148 -11.0748 1.9794 22 6 -1.4978 -11.0965 3.2613 23 6 -0.7959 -10.0093 3.7450 24 17 -0.1483 -10.0388 5.3554 25 6 2.2141 -4.5077 1.0846 26 6 1.8590 -3.6723 -0.1505 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7264 -2.5110 0.5019 29 1 0.0590 -1.4120 1.6628 30 1 -0.5048 -3.5062 2.9393 31 1 2.0775 -5.7881 3.4318 32 1 0.5645 -5.0874 4.0548 33 1 -0.0428 -6.6247 1.7645 34 1 -1.0000 -8.0011 1.0149 35 1 -2.5633 -11.9272 1.6064 36 1 -1.6436 -11.9650 3.8863 37 1 3.1445 -4.1403 1.5176 38 1 2.3439 -5.5486 0.7884 39 1 1.0845 -4.1746 -0.7301 40 1 2.7474 -3.5302 -0.7658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001194197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:37 Heat of formation + Delta-G solvation = -29.186942 kcal Electronic energy + Delta-G solvation = -25855.365996 eV Core-core repulsion = 21804.032245 eV Total energy + Delta-G solvation = -4051.333750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02281 -41.36040 -39.72425 -39.05167 -37.40564 -36.43430 -34.64712 -33.09151 -32.19027 -31.39988 -31.33347 -28.61895 -26.28207 -25.01797 -24.37166 -23.70134 -22.78260 -21.77870 -19.80965 -19.39951 -18.02609 -17.70695 -17.61902 -17.13662 -16.87148 -16.80390 -16.66209 -16.27582 -15.78082 -15.51707 -15.34447 -15.19502 -14.72255 -14.55848 -14.52171 -14.09414 -13.92525 -13.58814 -13.55534 -13.27290 -12.92003 -12.80779 -12.67981 -12.58745 -12.32164 -12.31530 -12.22200 -12.08401 -11.71235 -11.27128 -10.76414 -10.67792 -10.44324 -10.12299 -9.71023 -9.66638 -8.75230 -7.88993 -5.29844 -0.55440 -0.15367 1.06056 1.15886 1.46339 1.48401 1.57771 1.63568 2.24752 2.45425 2.50961 2.99039 3.28467 3.43640 3.51554 3.62463 3.85971 3.88080 3.96914 4.01693 4.28023 4.43762 4.51126 4.53571 4.63916 4.72571 4.74974 4.83344 4.86274 4.91213 4.95954 5.09786 5.21132 5.29294 5.39922 5.48047 5.50438 5.61306 5.75991 6.15663 6.33614 6.42895 7.08375 7.13328 7.83389 8.36791 9.19607 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.002412 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.217021 B =11604.116655 C =12549.427183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.169 3.831 14 N -0.707 5.707 15 C 0.549 3.451 16 O -0.546 6.546 17 C -0.114 4.114 18 C -0.109 4.109 19 C 0.090 3.910 20 F -0.135 7.135 21 C -0.101 4.101 22 C -0.083 4.083 23 C -0.013 4.013 24 Cl -0.041 7.041 25 C -0.085 4.085 26 C 0.138 3.862 27 H 0.250 0.750 28 H 0.015 0.985 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -25.905 5.208 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.161 4.161 12 C -0.141 4.141 13 C 0.047 3.953 14 N -0.359 5.359 15 C 0.336 3.664 16 O -0.425 6.425 17 C -0.118 4.118 18 C -0.129 4.129 19 C 0.071 3.929 20 F -0.113 7.113 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.041 4.041 24 Cl -0.011 7.011 25 C -0.123 4.123 26 C 0.013 3.987 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.176 0.824 35 H 0.200 0.800 36 H 0.196 0.804 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.048 -25.746 6.108 26.768 hybrid contribution -0.003 1.537 -0.613 1.655 sum -4.050 -24.209 5.495 25.153 Atomic orbital electron populations 1.70160 1.06468 1.25766 1.56161 1.25726 0.96165 1.01295 1.01695 0.85267 0.78107 0.79762 0.77369 1.21250 1.21972 1.19618 1.19508 0.92555 0.85648 1.40961 0.91239 1.44413 1.29441 1.02159 1.57949 1.19404 0.87709 0.94972 0.89950 1.22968 0.98111 0.96099 0.98875 1.20603 0.98314 0.96629 0.98574 1.20266 0.96675 0.83845 0.94545 1.45964 1.56045 1.15508 1.18369 1.18287 0.80132 0.82847 0.85143 1.90866 1.50443 1.81733 1.19445 1.19506 1.02734 0.94859 0.94698 1.21388 0.97331 0.99474 0.94701 1.17702 0.98253 0.95947 0.80996 1.91559 1.84993 1.96823 1.37951 1.21671 0.99283 0.98253 0.92791 1.21244 0.95383 0.97670 0.95812 1.21313 0.99146 0.95432 0.88212 1.98429 1.84495 1.98275 1.19930 1.20732 0.96303 1.00336 0.94947 1.21184 0.97378 0.85773 0.94358 0.94127 0.96760 0.92522 0.86907 0.90879 0.91621 0.75358 0.82405 0.80014 0.80417 0.91776 0.89378 0.95294 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 11.08 21.65 0.24 -54.70 16 2 C -0.05 -3.00 5.01 84.86 0.43 -2.57 16 3 Si 0.97 44.78 29.58 68.60 2.03 46.81 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.26 -13.98 9.71 84.04 0.82 -13.17 16 8 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 9 N -0.62 -30.31 3.01 -703.03 -2.11 -32.42 16 10 C 0.20 9.70 5.23 85.42 0.45 10.14 16 11 C -0.14 -5.08 9.47 27.11 0.26 -4.82 16 12 C -0.14 -4.37 5.22 -15.13 -0.08 -4.45 16 13 C 0.17 4.50 5.66 85.63 0.48 4.98 16 14 N -0.71 -16.22 5.50 -469.78 -2.58 -18.80 16 15 C 0.55 13.73 7.76 86.77 0.67 14.40 16 16 O -0.55 -17.01 13.96 -3.91 -0.05 -17.06 16 17 C -0.11 -2.26 5.88 -20.08 -0.12 -2.38 16 18 C -0.11 -1.73 9.52 22.57 0.21 -1.52 16 19 C 0.09 1.26 7.29 22.34 0.16 1.42 16 20 F -0.13 -2.14 17.26 44.97 0.78 -1.36 16 21 C -0.10 -0.94 10.02 22.37 0.22 -0.72 16 22 C -0.08 -0.90 9.82 22.25 0.22 -0.68 16 23 C -0.01 -0.23 6.35 22.60 0.14 -0.09 16 24 Cl -0.04 -0.88 26.02 -2.72 -0.07 -0.96 16 25 C -0.08 -2.63 5.95 29.71 0.18 -2.45 16 26 C 0.14 5.37 6.59 86.31 0.57 5.94 16 27 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 3.07 6.41 -2.39 -0.02 3.05 16 30 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 31 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 32 H 0.07 1.83 7.78 -2.38 -0.02 1.82 16 33 H 0.41 7.89 6.50 -92.71 -0.60 7.29 16 34 H 0.16 2.11 6.41 -2.91 -0.02 2.09 16 35 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.18 0.90 8.06 -2.92 -0.02 0.88 16 37 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 Total: -1.00 -67.92 352.96 3.33 -64.59 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.49 Total: 9.85 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 4.61 Total: 4.05 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.46 Total: -105.92 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.05 Total: -17.06 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.96 kcal Total: -67.92 3.33 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001194197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.406 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds