Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47086 * 299.99888 * 3 2 1 6 6 H 1.48500 * 109.46988 * 60.00040 * 3 2 1 7 7 C 1.38816 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99828 * 164.47067 * 7 2 1 9 9 N 1.36936 * 119.99772 * 344.47294 * 7 2 1 10 10 C 1.47132 * 121.53492 * 336.23726 * 9 7 2 11 11 C 1.50330 * 109.10280 * 223.15848 * 10 9 7 12 12 C 1.29451 * 123.65007 * 348.53955 * 11 10 9 13 13 C 1.50703 * 117.69445 * 181.14193 * 12 11 10 14 14 N 1.46498 * 109.47252 * 94.99944 * 13 12 11 15 15 C 1.34779 * 119.99823 * 180.02562 * 14 13 12 16 16 O 1.21550 * 119.99894 * 0.02562 * 15 14 13 17 17 C 1.47848 * 119.99697 * 180.02562 * 15 14 13 18 18 C 1.39567 * 120.12795 * 359.71853 * 17 15 14 19 19 C 1.38190 * 119.85177 * 179.72761 * 18 17 15 20 20 F 1.35097 * 119.94340 * 180.29972 * 19 18 17 21 21 C 1.38569 * 120.10406 * 0.57340 * 19 18 17 22 22 C 1.38411 * 120.25866 * 359.70403 * 21 19 18 23 23 Cl 1.73599 * 119.92750 * 180.02562 * 22 21 19 24 24 C 1.38116 * 120.14323 * 359.97438 * 22 21 19 25 25 C 1.49968 * 124.61393 * 1.11887 * 12 11 10 26 26 C 1.47334 * 121.37729 * 156.00698 * 9 7 2 27 27 H 0.97003 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.71691 * 103.17001 * 10 9 7 29 29 H 1.09002 * 109.38830 * 342.94468 * 10 9 7 30 30 H 1.07993 * 118.17045 * 168.82415 * 11 10 9 31 31 H 1.08995 * 109.46849 * 215.00173 * 13 12 11 32 32 H 1.08996 * 109.46895 * 334.99931 * 13 12 11 33 33 H 0.97004 * 119.99982 * 0.02562 * 14 13 12 34 34 H 1.08000 * 120.07605 * 0.02622 * 18 17 15 35 35 H 1.07994 * 119.87072 * 179.71811 * 21 19 18 36 36 H 1.07999 * 120.04732 * 180.02562 * 24 22 21 37 37 H 1.08993 * 109.31804 * 101.31133 * 25 12 11 38 38 H 1.09003 * 109.31610 * 220.74063 * 25 12 11 39 39 H 1.09008 * 109.77605 * 358.61758 * 26 9 7 40 40 H 1.09005 * 109.78096 * 237.81202 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2191 -0.2510 9 7 1.3630 -2.3666 0.3164 10 6 0.1407 -2.3692 1.1353 11 6 0.2246 -3.4834 2.1410 12 6 1.1204 -4.4171 2.1040 13 6 1.0640 -5.4844 3.1664 14 7 0.3204 -6.6400 2.6587 15 6 0.1410 -7.7227 3.4412 16 8 0.5958 -7.7400 4.5683 17 6 -0.6089 -8.8892 2.9285 18 6 -1.1372 -8.8698 1.6368 19 6 -1.8323 -9.9654 1.1614 20 9 -2.3392 -9.9510 -0.0907 21 6 -2.0150 -11.0765 1.9690 22 6 -1.4979 -11.0983 3.2528 23 17 -1.7313 -12.4950 4.2569 24 6 -0.7958 -10.0116 3.7362 25 6 2.2102 -4.5119 1.0781 26 6 1.8589 -3.6721 -0.1530 27 1 -0.4850 0.8401 0.0004 28 1 -0.7296 -2.5198 0.4965 29 1 0.0513 -1.4153 1.6551 30 1 -0.5058 -3.5086 2.9360 31 1 2.0768 -5.7904 3.4281 32 1 0.5635 -5.0904 4.0509 33 1 -0.0428 -6.6261 1.7593 34 1 -0.9989 -8.0023 1.0085 35 1 -2.5627 -11.9289 1.5953 36 1 -0.3927 -10.0304 4.7380 37 1 3.1431 -4.1480 1.5084 38 1 2.3356 -5.5530 0.7805 39 1 2.7475 -3.5297 -0.7681 40 1 1.0844 -4.1740 -0.7330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001194450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = -22.117335 kcal Electronic energy + Delta-G solvation = -25580.249935 eV Core-core repulsion = 21529.222746 eV Total energy + Delta-G solvation = -4051.027189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.41587 -40.54733 -38.84181 -37.78882 -36.92815 -35.14367 -33.15773 -31.86212 -31.00845 -30.75749 -29.77759 -27.18117 -24.98918 -23.88183 -23.12745 -22.76777 -21.22088 -20.88064 -18.97876 -17.70092 -17.32083 -16.78390 -16.64439 -16.18712 -15.87334 -15.70631 -15.39777 -15.24040 -14.99677 -14.23467 -14.00156 -13.86838 -13.81321 -13.57330 -13.46424 -13.04460 -12.55945 -12.38313 -12.26272 -12.13655 -11.79515 -11.63738 -11.58634 -11.43922 -10.97371 -10.79795 -10.51113 -10.35005 -10.24939 -9.88570 -9.67082 -9.62846 -9.30132 -9.13903 -8.75034 -8.15532 -6.81660 -5.85602 -3.24404 0.08921 0.43617 1.44260 2.31082 2.43651 3.20832 3.25697 3.34350 3.42378 3.44248 3.60442 4.12874 4.30647 4.41652 4.44653 4.48240 4.78341 5.04697 5.12381 5.26114 5.30051 5.33474 5.46719 5.50753 5.56800 5.72152 5.83841 5.98585 6.03734 6.08352 6.25234 6.27031 6.43344 6.65879 6.79337 7.07525 7.17303 7.22490 7.35468 7.66011 7.75654 7.96014 8.31688 9.13261 9.75909 10.33716 11.24963 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.002109 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.122678 B =13272.713552 C =13901.839304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.192 3.808 11 C -0.120 4.120 12 C -0.170 4.170 13 C 0.157 3.843 14 N -0.710 5.710 15 C 0.556 3.444 16 O -0.532 6.532 17 C -0.087 4.087 18 C -0.117 4.117 19 C 0.112 3.888 20 F -0.126 7.126 21 C -0.126 4.126 22 C -0.016 4.016 23 Cl -0.048 7.048 24 C -0.063 4.063 25 C -0.090 4.090 26 C 0.143 3.857 27 H 0.254 0.746 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 -22.979 4.966 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.318 5.318 10 C 0.067 3.933 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.035 3.965 14 N -0.362 5.362 15 C 0.341 3.659 16 O -0.410 6.410 17 C -0.091 4.091 18 C -0.137 4.137 19 C 0.092 3.908 20 F -0.104 7.104 21 C -0.146 4.146 22 C -0.043 4.043 23 Cl -0.019 7.019 24 C -0.083 4.083 25 C -0.129 4.129 26 C 0.016 3.984 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.258 -22.912 5.807 24.017 hybrid contribution -0.015 0.741 -0.565 0.932 sum -4.273 -22.171 5.242 23.179 Atomic orbital electron populations 1.70010 1.05185 1.25481 1.54821 1.24996 0.95419 0.98355 1.01193 0.86176 0.79263 0.83795 0.77283 1.20283 1.21728 1.21559 1.19222 0.92286 0.84274 1.41692 0.91241 1.44172 1.28962 1.01221 1.57464 1.19805 0.88771 0.94921 0.89780 1.23324 0.95648 0.96564 0.98576 1.20481 1.00209 0.97253 0.99099 1.20543 0.96213 0.84024 0.95742 1.46150 1.55955 1.16062 1.17984 1.17983 0.80129 0.82365 0.85391 1.90803 1.49961 1.81531 1.18693 1.19770 1.00161 0.95422 0.93702 1.21491 0.97565 0.98620 0.96024 1.17232 0.97930 0.94820 0.80808 1.91579 1.84959 1.96708 1.37193 1.21173 1.01602 0.99016 0.92768 1.20473 1.01177 0.90484 0.92198 1.98408 1.95697 1.39670 1.68150 1.21230 0.95773 0.90112 1.01179 1.20761 0.96655 0.99018 0.96509 1.20962 0.97414 0.87228 0.92762 0.93608 0.93988 0.88739 0.88685 0.91133 0.91214 0.76237 0.83298 0.83081 0.82717 0.91643 0.92886 0.92389 0.95941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.58 11.07 55.49 0.61 -24.97 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.54 9.71 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -14.29 3.01 -173.56 -0.52 -14.81 16 10 C 0.19 4.34 5.25 -5.03 -0.03 4.32 16 11 C -0.12 -2.15 9.47 -35.78 -0.34 -2.48 16 12 C -0.17 -2.70 5.22 -100.99 -0.53 -3.22 16 13 C 0.16 2.15 5.66 -5.19 -0.03 2.12 16 14 N -0.71 -8.36 5.50 -62.43 -0.34 -8.70 16 15 C 0.56 6.89 7.77 -12.33 -0.10 6.80 16 16 O -0.53 -8.31 16.35 5.32 0.09 -8.22 16 17 C -0.09 -0.86 5.87 -104.98 -0.62 -1.48 16 18 C -0.12 -0.99 9.52 -39.10 -0.37 -1.37 16 19 C 0.11 0.93 7.29 -39.48 -0.29 0.64 16 20 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 21 C -0.13 -0.93 9.80 -39.40 -0.39 -1.32 16 22 C -0.02 -0.13 6.31 -39.56 -0.25 -0.38 16 23 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 24 C -0.06 -0.59 9.37 -39.14 -0.37 -0.95 16 25 C -0.09 -1.47 5.95 -28.18 -0.17 -1.64 16 26 C 0.14 2.80 6.57 -3.53 -0.02 2.77 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 2.41 6.39 -51.93 -0.33 2.08 16 30 H 0.10 1.51 7.73 -52.49 -0.41 1.11 16 31 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 33 H 0.40 4.04 6.50 -40.82 -0.27 3.77 16 34 H 0.15 1.05 6.40 -52.49 -0.34 0.72 16 35 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.44 7.65 -52.49 -0.40 1.04 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.11 7.96 -51.92 -0.41 0.70 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -29.79 357.17 -9.64 -39.43 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.64 Total: 1.60 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.72 Total: -3.02 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.25 Total: -48.49 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.79 -9.64 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001194450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.313 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds