Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47086 * 299.99888 * 3 2 1 6 6 H 1.48500 * 109.46988 * 60.00040 * 3 2 1 7 7 C 1.38816 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99828 * 164.47067 * 7 2 1 9 9 N 1.36936 * 119.99772 * 344.47294 * 7 2 1 10 10 C 1.47132 * 121.53492 * 336.23726 * 9 7 2 11 11 C 1.50330 * 109.10280 * 223.15848 * 10 9 7 12 12 C 1.29451 * 123.65007 * 348.53955 * 11 10 9 13 13 C 1.50703 * 117.69445 * 181.14193 * 12 11 10 14 14 N 1.46498 * 109.47252 * 94.99944 * 13 12 11 15 15 C 1.34779 * 119.99823 * 180.02562 * 14 13 12 16 16 O 1.21550 * 119.99894 * 0.02562 * 15 14 13 17 17 C 1.47848 * 119.99697 * 180.02562 * 15 14 13 18 18 C 1.39567 * 120.12795 * 359.71853 * 17 15 14 19 19 C 1.38190 * 119.85177 * 179.72761 * 18 17 15 20 20 F 1.35097 * 119.94340 * 180.29972 * 19 18 17 21 21 C 1.38569 * 120.10406 * 0.57340 * 19 18 17 22 22 C 1.38411 * 120.25866 * 359.70403 * 21 19 18 23 23 Cl 1.73599 * 119.92750 * 180.02562 * 22 21 19 24 24 C 1.38116 * 120.14323 * 359.97438 * 22 21 19 25 25 C 1.49968 * 124.61393 * 1.11887 * 12 11 10 26 26 C 1.47334 * 121.37729 * 156.00698 * 9 7 2 27 27 H 0.97003 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.71691 * 103.17001 * 10 9 7 29 29 H 1.09002 * 109.38830 * 342.94468 * 10 9 7 30 30 H 1.07993 * 118.17045 * 168.82415 * 11 10 9 31 31 H 1.08995 * 109.46849 * 215.00173 * 13 12 11 32 32 H 1.08996 * 109.46895 * 334.99931 * 13 12 11 33 33 H 0.97004 * 119.99982 * 0.02562 * 14 13 12 34 34 H 1.08000 * 120.07605 * 0.02622 * 18 17 15 35 35 H 1.07994 * 119.87072 * 179.71811 * 21 19 18 36 36 H 1.07999 * 120.04732 * 180.02562 * 24 22 21 37 37 H 1.08993 * 109.31804 * 101.31133 * 25 12 11 38 38 H 1.09003 * 109.31610 * 220.74063 * 25 12 11 39 39 H 1.09008 * 109.77605 * 358.61758 * 26 9 7 40 40 H 1.09005 * 109.78096 * 237.81202 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2191 -0.2510 9 7 1.3630 -2.3666 0.3164 10 6 0.1407 -2.3692 1.1353 11 6 0.2246 -3.4834 2.1410 12 6 1.1204 -4.4171 2.1040 13 6 1.0640 -5.4844 3.1664 14 7 0.3204 -6.6400 2.6587 15 6 0.1410 -7.7227 3.4412 16 8 0.5958 -7.7400 4.5683 17 6 -0.6089 -8.8892 2.9285 18 6 -1.1372 -8.8698 1.6368 19 6 -1.8323 -9.9654 1.1614 20 9 -2.3392 -9.9510 -0.0907 21 6 -2.0150 -11.0765 1.9690 22 6 -1.4979 -11.0983 3.2528 23 17 -1.7313 -12.4950 4.2569 24 6 -0.7958 -10.0116 3.7362 25 6 2.2102 -4.5119 1.0781 26 6 1.8589 -3.6721 -0.1530 27 1 -0.4850 0.8401 0.0004 28 1 -0.7296 -2.5198 0.4965 29 1 0.0513 -1.4153 1.6551 30 1 -0.5058 -3.5086 2.9360 31 1 2.0768 -5.7904 3.4281 32 1 0.5635 -5.0904 4.0509 33 1 -0.0428 -6.6261 1.7593 34 1 -0.9989 -8.0023 1.0085 35 1 -2.5627 -11.9289 1.5953 36 1 -0.3927 -10.0304 4.7380 37 1 3.1431 -4.1480 1.5084 38 1 2.3356 -5.5530 0.7805 39 1 2.7475 -3.5297 -0.7681 40 1 1.0844 -4.1740 -0.7330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001194450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = -38.273666 kcal Electronic energy + Delta-G solvation = -25580.950526 eV Core-core repulsion = 21529.222746 eV Total energy + Delta-G solvation = -4051.727780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.08229 -41.43324 -39.78262 -39.14725 -37.55987 -36.49800 -34.66910 -33.01230 -32.15245 -31.62473 -31.38214 -28.64732 -26.34014 -25.00604 -24.34454 -23.82410 -22.80119 -21.80720 -19.87633 -19.41303 -18.08538 -17.69870 -17.43529 -17.16797 -16.92982 -16.86146 -16.75455 -16.31084 -15.97127 -15.69507 -15.39233 -15.22279 -14.86936 -14.60952 -14.53338 -14.24728 -13.96054 -13.62586 -13.26460 -13.23776 -12.94032 -12.93214 -12.80733 -12.61256 -12.46459 -12.20381 -12.18888 -12.09204 -11.70163 -11.37572 -11.20642 -10.69677 -10.38347 -10.09613 -9.95409 -9.66709 -8.75240 -7.88718 -5.29378 -0.60585 -0.22199 0.81446 1.15873 1.46247 1.48717 1.50519 1.58341 2.22601 2.41862 2.51088 2.92622 3.28717 3.41183 3.60962 3.66751 3.77357 3.80614 3.86245 3.97400 4.12666 4.42799 4.44416 4.54267 4.63396 4.66980 4.74468 4.83908 4.84572 4.89322 4.92977 5.10692 5.21290 5.25138 5.39738 5.41674 5.49217 5.62016 5.76791 6.16366 6.34030 6.38779 7.01554 7.13592 7.83651 8.37143 9.19924 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.002109 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.122678 B =13272.713552 C =13901.839304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.203 3.797 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.167 3.833 14 N -0.703 5.703 15 C 0.560 3.440 16 O -0.568 6.568 17 C -0.098 4.098 18 C -0.110 4.110 19 C 0.106 3.894 20 F -0.130 7.130 21 C -0.113 4.113 22 C -0.018 4.018 23 Cl -0.042 7.042 24 C -0.065 4.065 25 C -0.085 4.085 26 C 0.137 3.863 27 H 0.249 0.751 28 H 0.016 0.984 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -25.053 4.975 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.078 3.922 11 C -0.160 4.160 12 C -0.141 4.141 13 C 0.044 3.956 14 N -0.355 5.355 15 C 0.347 3.653 16 O -0.448 6.448 17 C -0.101 4.101 18 C -0.129 4.129 19 C 0.086 3.914 20 F -0.108 7.108 21 C -0.132 4.132 22 C -0.045 4.045 23 Cl -0.013 7.013 24 C -0.085 4.085 25 C -0.123 4.123 26 C 0.012 3.988 27 H 0.058 0.942 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.168 0.832 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.747 -25.021 5.794 25.955 hybrid contribution -0.160 1.254 -0.610 1.403 sum -3.908 -23.767 5.185 24.638 Atomic orbital electron populations 1.70163 1.06445 1.25682 1.56321 1.25722 0.96179 1.01285 1.01818 0.85216 0.78595 0.80043 0.76677 1.19152 1.21999 1.21894 1.19536 0.92554 0.85581 1.40683 0.91173 1.44458 1.29183 1.02164 1.58162 1.19448 0.87653 0.95098 0.90028 1.22973 0.98091 0.96052 0.98847 1.20589 0.98366 0.96610 0.98568 1.20320 0.96829 0.83823 0.94648 1.45962 1.55657 1.15390 1.18453 1.18237 0.79537 0.82723 0.84766 1.90789 1.51552 1.82233 1.20227 1.19487 1.01327 0.94813 0.94490 1.21570 0.96743 0.99144 0.95446 1.17264 0.98211 0.95091 0.80796 1.91577 1.85051 1.96739 1.37451 1.21391 1.00429 0.99259 0.92118 1.20447 1.01127 0.90415 0.92540 1.98414 1.95639 1.39177 1.68061 1.21247 0.95846 0.90392 1.01018 1.20701 0.96366 1.00368 0.94898 1.21161 0.97418 0.85802 0.94433 0.94153 0.96658 0.92504 0.86793 0.90642 0.91394 0.75023 0.81965 0.81002 0.83210 0.91783 0.89214 0.92327 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.56 11.07 21.65 0.24 -54.32 16 2 C -0.06 -3.05 5.01 84.86 0.43 -2.62 16 3 Si 0.97 44.49 29.58 68.60 2.03 46.51 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.25 -13.65 9.71 84.03 0.82 -12.83 16 8 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 9 N -0.62 -29.82 3.01 -703.04 -2.12 -31.94 16 10 C 0.20 9.43 5.25 85.40 0.45 9.88 16 11 C -0.14 -4.88 9.47 27.11 0.26 -4.62 16 12 C -0.14 -4.19 5.22 -15.13 -0.08 -4.26 16 13 C 0.17 4.16 5.66 85.63 0.48 4.64 16 14 N -0.70 -14.82 5.50 -469.71 -2.58 -17.40 16 15 C 0.56 12.90 7.77 86.79 0.67 13.58 16 16 O -0.57 -17.08 16.35 -3.87 -0.06 -17.15 16 17 C -0.10 -1.75 5.87 -20.10 -0.12 -1.87 16 18 C -0.11 -1.60 9.52 22.58 0.21 -1.38 16 19 C 0.11 1.50 7.29 22.34 0.16 1.67 16 20 F -0.13 -2.05 17.26 44.97 0.78 -1.28 16 21 C -0.11 -1.38 9.80 22.39 0.22 -1.16 16 22 C -0.02 -0.26 6.31 22.28 0.14 -0.12 16 23 Cl -0.04 -0.55 28.95 -2.72 -0.08 -0.63 16 24 C -0.07 -1.11 9.37 22.56 0.21 -0.90 16 25 C -0.08 -2.53 5.95 29.65 0.18 -2.36 16 26 C 0.14 5.20 6.57 86.26 0.57 5.77 16 27 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 3.04 6.39 -2.39 -0.02 3.02 16 30 H 0.11 3.54 7.73 -2.91 -0.02 3.52 16 31 H 0.08 1.88 8.11 -2.39 -0.02 1.86 16 32 H 0.07 1.78 7.78 -2.39 -0.02 1.76 16 33 H 0.41 7.08 6.50 -92.71 -0.60 6.48 16 34 H 0.16 1.84 6.40 -2.91 -0.02 1.82 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.15 2.68 7.65 -2.91 -0.02 2.66 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.18 7.96 -2.38 -0.02 2.16 16 40 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -65.22 357.17 3.29 -61.93 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.49 Total: 10.87 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.60 Total: 3.41 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.46 Total: -103.67 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.06 Total: -17.15 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.28 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -65.22 3.29 -61.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001194450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.656 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds