Wall clock time and date at job start Tue Mar 31 2020 20:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47337 * 269.99914 * 3 2 1 5 5 H 1.48504 * 109.47004 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47316 * 149.99544 * 3 2 1 7 7 C 1.38813 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99459 * 164.52181 * 7 2 1 9 9 N 1.36928 * 120.00620 * 344.52245 * 7 2 1 10 10 C 1.47005 * 121.37512 * 335.96855 * 9 7 2 11 11 C 1.50324 * 109.17056 * 222.96905 * 10 9 7 12 12 C 1.29455 * 123.64872 * 349.02491 * 11 10 9 13 13 C 1.50695 * 117.69369 * 180.85619 * 12 11 10 14 14 N 1.46501 * 109.47207 * 94.99945 * 13 12 11 15 15 C 1.34776 * 120.00113 * 179.97438 * 14 13 12 16 16 O 1.21577 * 120.00039 * 0.02562 * 15 14 13 17 17 C 1.47654 * 119.99723 * 179.97438 * 15 14 13 18 18 C 1.39698 * 120.13317 * 359.72900 * 17 15 14 19 19 C 1.37769 * 119.89248 * 180.25153 * 18 17 15 20 20 C 1.38719 * 120.15766 * 0.03967 * 19 18 17 21 21 F 1.35104 * 119.86533 * 179.97438 * 20 19 18 22 22 C 1.38562 * 120.26173 * 359.95721 * 20 19 18 23 23 C 1.38030 * 120.10580 * 0.02562 * 22 20 19 24 24 Cl 1.73602 * 120.07579 * 179.97438 * 23 22 20 25 25 C 1.49971 * 124.60785 * 1.13364 * 12 11 10 26 26 C 1.47341 * 121.37836 * 155.99092 * 9 7 2 27 27 H 0.96993 * 119.99554 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52472 * 103.06203 * 10 9 7 29 29 H 1.09009 * 109.51906 * 342.87288 * 10 9 7 30 30 H 1.07998 * 118.17998 * 168.99350 * 11 10 9 31 31 H 1.08997 * 109.47497 * 334.99383 * 13 12 11 32 32 H 1.09004 * 109.47148 * 214.99649 * 13 12 11 33 33 H 0.97006 * 119.99939 * 359.97438 * 14 13 12 34 34 H 1.08000 * 120.05080 * 0.24985 * 18 17 15 35 35 H 1.08007 * 119.92204 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.94639 * 180.02562 * 22 20 19 37 37 H 1.09004 * 109.31458 * 101.01940 * 25 12 11 38 38 H 1.09008 * 109.31110 * 220.43578 * 25 12 11 39 39 H 1.09000 * 109.77688 * 237.78641 * 26 9 7 40 40 H 1.08997 * 109.77503 * 358.59380 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0609 -1.2192 -0.2491 9 7 1.3629 -2.3664 0.3175 10 6 0.1444 -2.3652 1.1399 11 6 0.2245 -3.4823 2.1426 12 6 1.1203 -4.4162 2.1060 13 6 1.0638 -5.4829 3.1689 14 7 0.3200 -6.6387 2.6618 15 6 0.1414 -7.7213 3.4445 16 8 0.5971 -7.7386 4.5715 17 6 -0.6086 -8.8860 2.9335 18 6 -1.1392 -8.8665 1.6413 19 6 -1.8427 -9.9538 1.1714 20 6 -2.0259 -11.0671 1.9785 21 9 -2.7172 -12.1299 1.5119 22 6 -1.5024 -11.0934 3.2612 23 6 -0.7955 -10.0101 3.7428 24 17 -0.1405 -10.0436 5.3502 25 6 2.2138 -4.5080 1.0838 26 6 1.8590 -3.6722 -0.1512 27 1 -0.4849 0.8400 0.0004 28 1 -0.7265 -2.5111 0.5010 29 1 0.0586 -1.4123 1.6624 30 1 -0.5055 -3.5069 2.9381 31 1 0.5635 -5.0885 4.0534 32 1 2.0767 -5.7890 3.4307 33 1 -0.0439 -6.6248 1.7627 34 1 -0.9982 -8.0003 1.0118 35 1 -2.2528 -9.9394 0.1723 36 1 -1.6477 -11.9629 3.8851 37 1 3.1442 -4.1408 1.5171 38 1 2.3437 -5.5489 0.7873 39 1 1.0847 -4.1744 -0.7311 40 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001419896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:04 Heat of formation + Delta-G solvation = -12.593317 kcal Electronic energy + Delta-G solvation = -25717.849298 eV Core-core repulsion = 21667.235101 eV Total energy + Delta-G solvation = -4050.614197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.48484 -40.45933 -38.67982 -37.69848 -36.71302 -35.03528 -33.09028 -31.70427 -31.26042 -30.66322 -29.74460 -27.03897 -24.69564 -23.84763 -23.26392 -22.75836 -21.19673 -20.78299 -18.78628 -17.95909 -17.60924 -17.17059 -16.20597 -15.86055 -15.70368 -15.50798 -15.34946 -15.01253 -14.78708 -14.28521 -13.93312 -13.86987 -13.81317 -13.49860 -13.37757 -13.18223 -12.86719 -12.30381 -12.09514 -11.87454 -11.71632 -11.63334 -11.47084 -11.35880 -10.95613 -10.76229 -10.44757 -10.36196 -9.88036 -9.79057 -9.64076 -9.56508 -9.28237 -8.97675 -8.73167 -8.12785 -6.80118 -5.84913 -3.23661 0.12767 0.50809 1.71489 2.41633 2.48360 3.28256 3.33783 3.35150 3.42221 3.44509 3.63180 4.07167 4.34078 4.39790 4.45414 4.61781 4.87010 5.04621 5.21919 5.29748 5.33616 5.35009 5.49067 5.50560 5.54897 5.76742 5.89048 6.00986 6.08195 6.10624 6.26441 6.35466 6.46011 6.67054 6.80581 7.09933 7.19241 7.25615 7.44791 7.67367 7.76762 8.10006 8.32853 9.14366 9.77048 10.34612 11.25625 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002256 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.040850 B =12407.863773 C =13180.471113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.122 4.122 12 C -0.168 4.168 13 C 0.159 3.841 14 N -0.714 5.714 15 C 0.549 3.451 16 O -0.518 6.518 17 C -0.137 4.137 18 C -0.044 4.044 19 C -0.156 4.156 20 C 0.135 3.865 21 F -0.128 7.128 22 C -0.159 4.159 23 C 0.039 3.961 24 Cl -0.016 7.016 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -22.162 4.350 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.143 4.143 12 C -0.169 4.169 13 C 0.037 3.963 14 N -0.366 5.366 15 C 0.335 3.665 16 O -0.395 6.395 17 C -0.141 4.141 18 C -0.063 4.063 19 C -0.175 4.175 20 C 0.116 3.884 21 F -0.107 7.107 22 C -0.179 4.179 23 C 0.011 3.989 24 Cl 0.014 6.986 25 C -0.129 4.129 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.108 -22.019 5.306 23.019 hybrid contribution 0.035 0.637 -0.370 0.738 sum -4.073 -21.382 4.936 22.319 Atomic orbital electron populations 1.70002 1.05186 1.25580 1.54729 1.24987 0.95401 0.98327 1.01165 0.86260 0.79097 0.83528 0.77697 1.21413 1.21542 1.20518 1.19166 0.92236 0.84352 1.41847 0.91370 1.44124 1.29221 1.01212 1.57276 1.19768 0.88810 0.94819 0.89753 1.23313 0.95784 0.96586 0.98610 1.20495 1.00037 0.97291 0.99091 1.20493 0.96163 0.84057 0.95619 1.46116 1.56408 1.16106 1.17924 1.17955 0.80494 0.82426 0.85616 1.90879 1.49200 1.81184 1.18197 1.19957 1.03620 0.95480 0.95038 1.21226 0.93356 0.98145 0.93552 1.21212 1.02157 0.92661 1.01489 1.17690 0.93617 0.84717 0.92421 1.91557 1.76408 1.54188 1.88509 1.20978 1.01329 0.99966 0.95621 1.20714 0.95915 0.93496 0.88775 1.98445 1.83504 1.98157 1.18505 1.20796 0.96610 0.99015 0.96524 1.20988 0.97339 0.87192 0.92745 0.93573 0.94067 0.88844 0.88718 0.91383 0.91304 0.76520 0.83366 0.83228 0.83036 0.91658 0.92911 0.95899 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.54 11.08 55.49 0.61 -24.93 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.57 9.71 -15.06 -0.15 -6.72 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -14.27 3.01 -173.56 -0.52 -14.79 16 10 C 0.19 4.37 5.23 -5.10 -0.03 4.34 16 11 C -0.12 -2.18 9.47 -35.78 -0.34 -2.52 16 12 C -0.17 -2.69 5.22 -100.99 -0.53 -3.22 16 13 C 0.16 2.21 5.66 -5.20 -0.03 2.18 16 14 N -0.71 -8.49 5.50 -62.49 -0.34 -8.84 16 15 C 0.55 7.06 7.76 -12.42 -0.10 6.96 16 16 O -0.52 -8.21 13.96 5.30 0.07 -8.14 16 17 C -0.14 -1.42 5.88 -104.93 -0.62 -2.04 16 18 C -0.04 -0.34 9.53 -39.21 -0.37 -0.71 16 19 C -0.16 -1.08 10.01 -39.58 -0.40 -1.48 16 20 C 0.14 1.07 7.31 -39.28 -0.29 0.79 16 21 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 22 C -0.16 -1.32 9.79 -39.54 -0.39 -1.71 16 23 C 0.04 0.41 6.35 -39.08 -0.25 0.16 16 24 Cl -0.02 -0.18 26.02 -51.86 -1.35 -1.53 16 25 C -0.09 -1.47 5.95 -28.09 -0.17 -1.64 16 26 C 0.14 2.80 6.59 -3.44 -0.02 2.78 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 2.38 6.41 -51.92 -0.33 2.05 16 30 H 0.09 1.52 7.73 -52.49 -0.41 1.12 16 31 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 32 H 0.07 0.99 8.11 -51.93 -0.42 0.56 16 33 H 0.40 3.95 6.49 -40.82 -0.26 3.69 16 34 H 0.15 0.84 6.40 -52.49 -0.34 0.50 16 35 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -30.34 352.95 -9.61 -39.95 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.66 Total: 0.66 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.75 Total: -2.94 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.25 Total: -48.56 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.14 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.34 -9.61 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001419896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.357 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds