Wall clock time and date at job start Tue Mar 31 2020 20:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47337 * 269.99914 * 3 2 1 5 5 H 1.48504 * 109.47004 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47316 * 149.99544 * 3 2 1 7 7 C 1.38813 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99459 * 164.52181 * 7 2 1 9 9 N 1.36928 * 120.00620 * 344.52245 * 7 2 1 10 10 C 1.47005 * 121.37512 * 335.96855 * 9 7 2 11 11 C 1.50324 * 109.17056 * 222.96905 * 10 9 7 12 12 C 1.29455 * 123.64872 * 349.02491 * 11 10 9 13 13 C 1.50695 * 117.69369 * 180.85619 * 12 11 10 14 14 N 1.46501 * 109.47207 * 94.99945 * 13 12 11 15 15 C 1.34776 * 120.00113 * 179.97438 * 14 13 12 16 16 O 1.21577 * 120.00039 * 0.02562 * 15 14 13 17 17 C 1.47654 * 119.99723 * 179.97438 * 15 14 13 18 18 C 1.39698 * 120.13317 * 359.72900 * 17 15 14 19 19 C 1.37769 * 119.89248 * 180.25153 * 18 17 15 20 20 C 1.38719 * 120.15766 * 0.03967 * 19 18 17 21 21 F 1.35104 * 119.86533 * 179.97438 * 20 19 18 22 22 C 1.38562 * 120.26173 * 359.95721 * 20 19 18 23 23 C 1.38030 * 120.10580 * 0.02562 * 22 20 19 24 24 Cl 1.73602 * 120.07579 * 179.97438 * 23 22 20 25 25 C 1.49971 * 124.60785 * 1.13364 * 12 11 10 26 26 C 1.47341 * 121.37836 * 155.99092 * 9 7 2 27 27 H 0.96993 * 119.99554 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52472 * 103.06203 * 10 9 7 29 29 H 1.09009 * 109.51906 * 342.87288 * 10 9 7 30 30 H 1.07998 * 118.17998 * 168.99350 * 11 10 9 31 31 H 1.08997 * 109.47497 * 334.99383 * 13 12 11 32 32 H 1.09004 * 109.47148 * 214.99649 * 13 12 11 33 33 H 0.97006 * 119.99939 * 359.97438 * 14 13 12 34 34 H 1.08000 * 120.05080 * 0.24985 * 18 17 15 35 35 H 1.08007 * 119.92204 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.94639 * 180.02562 * 22 20 19 37 37 H 1.09004 * 109.31458 * 101.01940 * 25 12 11 38 38 H 1.09008 * 109.31110 * 220.43578 * 25 12 11 39 39 H 1.09000 * 109.77688 * 237.78641 * 26 9 7 40 40 H 1.08997 * 109.77503 * 358.59380 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0609 -1.2192 -0.2491 9 7 1.3629 -2.3664 0.3175 10 6 0.1444 -2.3652 1.1399 11 6 0.2245 -3.4823 2.1426 12 6 1.1203 -4.4162 2.1060 13 6 1.0638 -5.4829 3.1689 14 7 0.3200 -6.6387 2.6618 15 6 0.1414 -7.7213 3.4445 16 8 0.5971 -7.7386 4.5715 17 6 -0.6086 -8.8860 2.9335 18 6 -1.1392 -8.8665 1.6413 19 6 -1.8427 -9.9538 1.1714 20 6 -2.0259 -11.0671 1.9785 21 9 -2.7172 -12.1299 1.5119 22 6 -1.5024 -11.0934 3.2612 23 6 -0.7955 -10.0101 3.7428 24 17 -0.1405 -10.0436 5.3502 25 6 2.2138 -4.5080 1.0838 26 6 1.8590 -3.6722 -0.1512 27 1 -0.4849 0.8400 0.0004 28 1 -0.7265 -2.5111 0.5010 29 1 0.0586 -1.4123 1.6624 30 1 -0.5055 -3.5069 2.9381 31 1 0.5635 -5.0885 4.0534 32 1 2.0767 -5.7890 3.4307 33 1 -0.0439 -6.6248 1.7627 34 1 -0.9982 -8.0003 1.0118 35 1 -2.2528 -9.9394 0.1723 36 1 -1.6477 -11.9629 3.8851 37 1 3.1442 -4.1408 1.5171 38 1 2.3437 -5.5489 0.7873 39 1 1.0847 -4.1744 -0.7311 40 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001419896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:03 Heat of formation + Delta-G solvation = -29.438373 kcal Electronic energy + Delta-G solvation = -25718.579754 eV Core-core repulsion = 21667.235101 eV Total energy + Delta-G solvation = -4051.344653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.11279 -41.33302 -39.69604 -39.01220 -37.49150 -36.40089 -34.59891 -32.90718 -32.08792 -31.77199 -31.33402 -28.53086 -26.13924 -24.75791 -24.35432 -23.97772 -22.77355 -21.71616 -19.67957 -19.35849 -18.64670 -17.93743 -17.36531 -16.99806 -16.83885 -16.65516 -16.27696 -16.22344 -15.80939 -15.51838 -15.31706 -15.15758 -14.79145 -14.57418 -14.52673 -14.07470 -13.99394 -13.88657 -13.52304 -13.24990 -12.88791 -12.78846 -12.57084 -12.49189 -12.43824 -12.27330 -12.21211 -12.06623 -11.68906 -11.24223 -10.76546 -10.66132 -10.24405 -10.14629 -9.82218 -9.63363 -8.72888 -7.87553 -5.27982 -0.57968 -0.10507 0.96791 1.18656 1.47251 1.49468 1.58198 1.63106 2.30352 2.49151 2.52165 3.00368 3.29996 3.46276 3.60236 3.65350 3.80465 3.89906 3.97223 4.00169 4.21827 4.47080 4.56358 4.57132 4.68700 4.73308 4.78979 4.86723 4.90027 4.92463 4.95614 5.13252 5.24478 5.34062 5.43189 5.49795 5.51193 5.63115 5.79424 6.18880 6.35488 6.50125 7.15162 7.15661 7.85760 8.38633 9.20881 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002256 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.040850 B =12407.863773 C =13180.471113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.170 3.830 14 N -0.705 5.705 15 C 0.550 3.450 16 O -0.553 6.553 17 C -0.152 4.152 18 C -0.035 4.035 19 C -0.146 4.146 20 C 0.135 3.865 21 F -0.129 7.129 22 C -0.158 4.158 23 C 0.025 3.975 24 Cl -0.037 7.037 25 C -0.085 4.085 26 C 0.139 3.861 27 H 0.249 0.751 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 -23.952 3.582 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.161 4.161 12 C -0.139 4.139 13 C 0.047 3.953 14 N -0.357 5.357 15 C 0.337 3.663 16 O -0.432 6.432 17 C -0.156 4.156 18 C -0.054 4.054 19 C -0.164 4.164 20 C 0.115 3.885 21 F -0.107 7.107 22 C -0.177 4.177 23 C -0.003 4.003 24 Cl -0.007 7.007 25 C -0.123 4.123 26 C 0.013 3.987 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.183 0.817 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.820 -23.844 4.513 24.566 hybrid contribution -0.054 1.067 -0.213 1.090 sum -3.874 -22.776 4.300 23.500 Atomic orbital electron populations 1.70154 1.06413 1.25734 1.56213 1.25700 0.96151 1.01214 1.01783 0.85309 0.77991 0.79830 0.77533 1.21125 1.22045 1.19807 1.19490 0.92527 0.85697 1.40866 0.91299 1.44410 1.29430 1.02170 1.57976 1.19406 0.87730 0.94933 0.89972 1.22957 0.98178 0.96062 0.98854 1.20588 0.98233 0.96604 0.98520 1.20242 0.96615 0.83955 0.94524 1.45904 1.56095 1.15291 1.18444 1.18280 0.80017 0.82888 0.85097 1.90866 1.50707 1.81872 1.19728 1.19857 1.04782 0.94651 0.96352 1.21450 0.92373 0.99089 0.92467 1.21515 1.00918 0.91587 1.02390 1.17811 0.93307 0.84989 0.92344 1.91563 1.76386 1.54347 1.88445 1.21084 1.00685 0.99836 0.96103 1.20819 0.96977 0.94362 0.88126 1.98434 1.83956 1.98235 1.20073 1.20736 0.96202 1.00444 0.94941 1.21190 0.97418 0.85705 0.94351 0.94156 0.96618 0.92674 0.86958 0.91831 0.91077 0.75098 0.81090 0.80449 0.81746 0.92003 0.89165 0.94988 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.24 11.08 21.65 0.24 -54.00 16 2 C -0.05 -2.94 5.01 84.86 0.43 -2.52 16 3 Si 0.96 44.34 29.58 68.60 2.03 46.37 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.26 -13.73 9.71 84.04 0.82 -12.91 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 9 N -0.62 -29.63 3.01 -703.03 -2.11 -31.74 16 10 C 0.20 9.45 5.23 85.42 0.45 9.90 16 11 C -0.14 -4.90 9.47 27.11 0.26 -4.64 16 12 C -0.14 -4.13 5.22 -15.14 -0.08 -4.20 16 13 C 0.17 4.31 5.66 85.63 0.48 4.80 16 14 N -0.70 -14.87 5.50 -469.90 -2.58 -17.46 16 15 C 0.55 13.13 7.76 86.73 0.67 13.81 16 16 O -0.55 -17.05 13.96 -3.96 -0.06 -17.11 16 17 C -0.15 -2.85 5.88 -20.07 -0.12 -2.97 16 18 C -0.04 -0.42 9.53 22.51 0.21 -0.21 16 19 C -0.15 -1.48 10.01 22.27 0.22 -1.25 16 20 C 0.14 1.77 7.31 22.46 0.16 1.94 16 21 F -0.13 -1.80 17.26 44.97 0.78 -1.02 16 22 C -0.16 -2.32 9.79 22.30 0.22 -2.11 16 23 C 0.03 0.49 6.35 22.59 0.14 0.63 16 24 Cl -0.04 -0.84 26.02 -2.72 -0.07 -0.91 16 25 C -0.08 -2.52 5.95 29.72 0.18 -2.34 16 26 C 0.14 5.18 6.59 86.31 0.57 5.75 16 27 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 2.94 6.41 -2.38 -0.02 2.92 16 30 H 0.11 3.51 7.73 -2.91 -0.02 3.49 16 31 H 0.06 1.73 7.78 -2.39 -0.02 1.71 16 32 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.41 6.69 6.49 -92.70 -0.60 6.09 16 34 H 0.17 1.20 6.40 -2.91 -0.02 1.18 16 35 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 2.12 7.96 -2.39 -0.02 2.10 16 Total: -1.00 -67.24 352.95 3.32 -63.91 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.49 Total: 8.27 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 4.61 Total: 3.67 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.46 Total: -103.19 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.78 Total: -1.02 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.07 Total: -0.91 kcal Total: -67.24 3.32 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001419896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.473 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds