Wall clock time and date at job start Tue Mar 31 2020 21:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46904 * 272.89768 * 3 2 1 5 5 H 1.48496 * 109.47241 * 32.89799 * 3 2 1 6 6 H 1.48498 * 109.47073 * 152.89818 * 3 2 1 7 7 C 1.38817 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99456 * 339.36550 * 7 2 1 9 9 N 1.36937 * 119.99792 * 159.36765 * 7 2 1 10 10 C 1.46928 * 120.63055 * 332.59641 * 9 7 2 11 11 C 1.53187 * 108.77571 * 233.63736 * 10 9 7 12 12 C 1.53043 * 109.31074 * 305.36344 * 11 10 9 13 13 C 1.53036 * 109.53626 * 61.37089 * 12 11 10 14 14 H 1.08998 * 109.52690 * 58.60173 * 13 12 11 15 15 N 1.46502 * 109.49878 * 178.68307 * 13 12 11 16 16 C 1.34773 * 120.00187 * 204.83800 * 15 13 12 17 17 O 1.21773 * 120.00058 * 359.71620 * 16 15 13 18 18 C 1.41715 * 120.00098 * 180.02562 * 16 15 13 19 19 S 1.75658 * 125.09988 * 359.74269 * 18 16 15 20 20 C 1.75560 * 91.21294 * 179.97438 * 19 18 16 21 21 C 1.34199 * 110.67533 * 359.97438 * 20 19 18 22 22 C 1.37148 * 125.10235 * 179.44298 * 18 16 15 23 23 O 1.37651 * 124.48423 * 0.84363 * 22 18 16 24 24 C 1.43382 * 114.57656 * 162.90992 * 23 22 18 25 25 C 1.53215 * 109.13875 * 46.27382 * 24 23 22 26 26 O 1.38247 * 124.14376 * 180.12952 * 21 20 19 27 27 C 1.46921 * 120.62981 * 152.62662 * 9 7 2 28 28 H 0.97004 * 119.99601 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.58668 * 353.42650 * 10 9 7 30 30 H 1.09002 * 109.58355 * 113.70316 * 10 9 7 31 31 H 1.08997 * 109.50130 * 65.31939 * 11 10 9 32 32 H 1.09001 * 109.49687 * 185.41573 * 11 10 9 33 33 H 1.08995 * 109.46452 * 301.34572 * 12 11 10 34 34 H 1.09007 * 109.45974 * 181.39037 * 12 11 10 35 35 H 0.97003 * 119.99596 * 24.83278 * 15 13 12 36 36 H 1.07997 * 124.66184 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.52597 * 286.37646 * 24 23 22 38 38 H 1.08996 * 109.58017 * 166.21144 * 24 23 22 39 39 H 1.09006 * 109.52261 * 177.84138 * 25 24 23 40 40 H 1.09002 * 109.57605 * 57.68507 * 25 24 23 41 41 H 1.08997 * 109.58987 * 6.57673 * 27 9 7 42 42 H 1.09002 * 109.58433 * 246.15310 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4364 2.0818 -1.3983 5 1 1.4797 2.6342 0.7604 6 1 3.5771 1.4233 0.6378 7 6 2.0102 -1.2022 0.0005 8 1 1.5221 -2.1073 0.3306 9 7 3.3137 -1.2404 -0.4173 10 6 3.8176 -0.2597 -1.3885 11 6 4.4618 -1.0104 -2.5582 12 6 5.5284 -1.9668 -2.0198 13 6 4.8745 -2.9914 -1.0899 14 1 4.1078 -3.5414 -1.6355 15 7 5.8910 -3.9257 -0.5997 16 6 5.5332 -5.1621 -0.2003 17 8 4.3643 -5.5010 -0.2420 18 6 6.5164 -6.0657 0.2743 19 16 8.2342 -5.7184 0.3927 20 6 8.5525 -7.3224 1.0313 21 6 7.4150 -8.0277 1.1292 22 6 6.2687 -7.3404 0.7156 23 8 5.0240 -7.9276 0.7429 24 6 5.0410 -9.3557 0.8693 25 6 6.0267 -9.7505 1.9739 26 8 7.3446 -9.3251 1.6016 27 6 4.2348 -2.2632 0.0965 28 1 -0.4850 0.8401 -0.0004 29 1 2.9910 0.3488 -1.7557 30 1 4.5585 0.3808 -0.9101 31 1 3.6989 -1.5785 -3.0903 32 1 4.9244 -0.2955 -3.2386 33 1 6.2779 -1.4008 -1.4667 34 1 6.0056 -2.4843 -2.8521 35 1 6.8215 -3.6543 -0.5627 36 1 9.5293 -7.6906 1.3082 37 1 5.3542 -9.8013 -0.0748 38 1 4.0435 -9.7115 1.1269 39 1 6.0162 -10.8330 2.1016 40 1 5.7385 -9.2706 2.9092 41 1 3.6838 -2.9767 0.7091 42 1 5.0116 -1.7877 0.6953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009062822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:09 Heat of formation + Delta-G solvation = -36.880204 kcal Electronic energy + Delta-G solvation = -27238.662483 eV Core-core repulsion = 23312.499139 eV Total energy + Delta-G solvation = -3926.163344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33034 -39.68631 -37.70407 -37.21162 -35.86849 -34.37824 -32.50870 -30.80013 -30.52422 -30.12567 -28.76668 -25.30718 -25.11450 -24.07498 -22.61496 -21.94506 -20.89670 -19.86963 -19.51193 -19.00378 -17.55125 -17.15052 -16.82199 -16.55713 -15.68815 -15.49870 -15.29761 -15.10982 -14.96714 -14.61178 -14.49299 -13.92967 -13.79064 -13.70314 -13.43346 -13.19398 -12.95310 -12.81936 -12.33784 -12.04664 -11.67129 -11.49816 -11.40609 -11.33034 -11.09989 -11.07891 -10.86805 -10.72089 -10.13045 -9.97233 -9.78163 -9.67152 -9.42149 -9.01366 -8.82654 -8.46940 -8.28602 -6.92398 -5.88340 -3.24620 0.15124 1.03823 1.27202 1.90038 2.91669 3.12342 3.28941 3.35005 3.36451 3.51512 3.54696 3.80767 4.20072 4.49303 4.54580 4.57843 4.90570 4.98729 5.00041 5.06527 5.12757 5.16973 5.28556 5.31619 5.46144 5.55396 5.65029 5.85650 5.98148 6.07480 6.22612 6.30681 6.33977 6.46396 6.56530 6.66411 6.68775 6.76475 6.82386 6.98156 7.65729 8.02338 8.37878 8.42301 9.00691 9.77913 10.13789 11.27708 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.002924 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.984991 B = 9573.019592 C =10408.707102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.127 3.873 14 H 0.093 0.907 15 N -0.722 5.722 16 C 0.585 3.415 17 O -0.507 6.507 18 C -0.271 4.271 19 S 0.206 5.794 20 C -0.213 4.213 21 C 0.035 3.965 22 C 0.125 3.875 23 O -0.257 6.257 24 C 0.012 3.988 25 C 0.017 3.983 26 O -0.292 6.292 27 C 0.144 3.856 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.390 0.610 36 H 0.181 0.819 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.841 -17.534 0.401 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.104 0.896 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.155 4.155 13 C 0.022 3.978 14 H 0.111 0.889 15 N -0.374 5.374 16 C 0.371 3.629 17 O -0.384 6.384 18 C -0.391 4.391 19 S 0.469 5.531 20 C -0.350 4.350 21 C -0.021 4.021 22 C 0.064 3.936 23 O -0.169 6.169 24 C -0.064 4.064 25 C -0.059 4.059 26 O -0.208 6.208 27 C 0.017 3.983 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.223 0.777 36 H 0.198 0.802 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.644 -16.473 0.069 26.411 hybrid contribution 0.005 -0.361 0.479 0.600 sum 20.649 -16.835 0.548 26.648 Atomic orbital electron populations 1.69849 1.05711 1.26435 1.53142 1.25267 0.95218 0.97478 0.99615 0.86944 0.80024 0.84725 0.76941 1.21624 1.23215 1.19629 1.18967 0.84783 0.94916 1.39884 0.89555 1.44292 1.08719 1.32769 1.46722 1.21406 0.97439 0.92103 0.89463 1.21991 0.97829 0.98310 0.98958 1.21688 0.98422 0.97007 0.98350 1.21709 0.89841 0.89306 0.96916 0.88936 1.45987 1.11073 1.13480 1.66861 1.15526 0.87496 0.81299 0.78539 1.90942 1.17686 1.76501 1.53232 1.22677 0.99094 0.99210 1.18105 1.84028 0.96826 1.09822 1.62444 1.24897 1.01811 0.97802 1.10525 1.18252 0.92718 0.87374 1.03796 1.18917 0.85490 0.92221 0.96954 1.87237 1.21626 1.20061 1.87995 1.23741 1.02807 0.80296 0.99573 1.23664 0.81705 1.02601 0.97922 1.87059 1.29618 1.23684 1.80420 1.21223 0.92709 0.91305 0.93063 0.92817 0.90759 0.95634 0.91343 0.92206 0.92070 0.92358 0.77688 0.80155 0.90266 0.85472 0.85730 0.90208 0.91342 0.95959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.97 55.49 0.78 -27.83 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.74 24.34 -169.99 -4.14 18.60 16 4 H -0.29 -7.09 6.62 56.52 0.37 -6.72 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -6.84 6.64 56.52 0.38 -6.46 16 7 C -0.26 -7.52 10.03 -15.06 -0.15 -7.67 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.60 -14.87 2.77 -172.32 -0.48 -15.34 16 10 C 0.12 2.66 4.21 -3.71 -0.02 2.65 16 11 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 12 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16 13 C 0.13 2.26 2.60 -67.81 -0.18 2.08 16 14 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 15 N -0.72 -10.77 5.07 -56.55 -0.29 -11.05 16 16 C 0.59 9.88 7.56 -14.93 -0.11 9.77 16 17 O -0.51 -10.85 15.52 -11.89 -0.18 -11.03 16 18 C -0.27 -3.72 6.25 -38.65 -0.24 -3.96 16 19 S 0.21 1.86 22.17 -107.50 -2.38 -0.52 16 20 C -0.21 -1.89 11.17 29.31 0.33 -1.56 16 21 C 0.04 0.39 6.55 -40.38 -0.26 0.13 16 22 C 0.13 1.70 6.58 -39.35 -0.26 1.45 16 23 O -0.26 -3.68 9.60 -49.13 -0.47 -4.15 16 24 C 0.01 0.10 7.14 37.27 0.27 0.37 16 25 C 0.02 0.12 7.14 37.27 0.27 0.39 16 26 O -0.29 -2.91 10.77 -35.42 -0.38 -3.29 16 27 C 0.14 3.08 6.09 -3.71 -0.02 3.05 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.07 1.79 4.50 -51.93 -0.23 1.55 16 30 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.39 4.52 7.54 -40.82 -0.31 4.22 16 36 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.61 7.93 -51.93 -0.41 1.20 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -36.61 348.87 -8.62 -45.23 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.55 Total: 1.21 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.78 Total: 2.93 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.01 Total: -54.23 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.04 Total: -18.47 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.38 Total: -0.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.61 -8.62 -45.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009062822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.351 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds