Wall clock time and date at job start Tue Mar 31 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46904 * 272.89768 * 3 2 1 5 5 H 1.48496 * 109.47241 * 32.89799 * 3 2 1 6 6 H 1.48498 * 109.47073 * 152.89818 * 3 2 1 7 7 C 1.38817 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99456 * 339.36550 * 7 2 1 9 9 N 1.36937 * 119.99792 * 159.36765 * 7 2 1 10 10 C 1.46928 * 120.63055 * 332.59641 * 9 7 2 11 11 C 1.53187 * 108.77571 * 233.63736 * 10 9 7 12 12 C 1.53043 * 109.31074 * 305.36344 * 11 10 9 13 13 C 1.53036 * 109.53626 * 61.37089 * 12 11 10 14 14 H 1.08998 * 109.52690 * 58.60173 * 13 12 11 15 15 N 1.46502 * 109.49878 * 178.68307 * 13 12 11 16 16 C 1.34773 * 120.00187 * 204.83800 * 15 13 12 17 17 O 1.21773 * 120.00058 * 359.71620 * 16 15 13 18 18 C 1.41715 * 120.00098 * 180.02562 * 16 15 13 19 19 S 1.75658 * 125.09988 * 359.74269 * 18 16 15 20 20 C 1.75560 * 91.21294 * 179.97438 * 19 18 16 21 21 C 1.34199 * 110.67533 * 359.97438 * 20 19 18 22 22 C 1.37148 * 125.10235 * 179.44298 * 18 16 15 23 23 O 1.37651 * 124.48423 * 0.84363 * 22 18 16 24 24 C 1.43382 * 114.57656 * 162.90992 * 23 22 18 25 25 C 1.53215 * 109.13875 * 46.27382 * 24 23 22 26 26 O 1.38247 * 124.14376 * 180.12952 * 21 20 19 27 27 C 1.46921 * 120.62981 * 152.62662 * 9 7 2 28 28 H 0.97004 * 119.99601 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.58668 * 353.42650 * 10 9 7 30 30 H 1.09002 * 109.58355 * 113.70316 * 10 9 7 31 31 H 1.08997 * 109.50130 * 65.31939 * 11 10 9 32 32 H 1.09001 * 109.49687 * 185.41573 * 11 10 9 33 33 H 1.08995 * 109.46452 * 301.34572 * 12 11 10 34 34 H 1.09007 * 109.45974 * 181.39037 * 12 11 10 35 35 H 0.97003 * 119.99596 * 24.83278 * 15 13 12 36 36 H 1.07997 * 124.66184 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.52597 * 286.37646 * 24 23 22 38 38 H 1.08996 * 109.58017 * 166.21144 * 24 23 22 39 39 H 1.09006 * 109.52261 * 177.84138 * 25 24 23 40 40 H 1.09002 * 109.57605 * 57.68507 * 25 24 23 41 41 H 1.08997 * 109.58987 * 6.57673 * 27 9 7 42 42 H 1.09002 * 109.58433 * 246.15310 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4364 2.0818 -1.3983 5 1 1.4797 2.6342 0.7604 6 1 3.5771 1.4233 0.6378 7 6 2.0102 -1.2022 0.0005 8 1 1.5221 -2.1073 0.3306 9 7 3.3137 -1.2404 -0.4173 10 6 3.8176 -0.2597 -1.3885 11 6 4.4618 -1.0104 -2.5582 12 6 5.5284 -1.9668 -2.0198 13 6 4.8745 -2.9914 -1.0899 14 1 4.1078 -3.5414 -1.6355 15 7 5.8910 -3.9257 -0.5997 16 6 5.5332 -5.1621 -0.2003 17 8 4.3643 -5.5010 -0.2420 18 6 6.5164 -6.0657 0.2743 19 16 8.2342 -5.7184 0.3927 20 6 8.5525 -7.3224 1.0313 21 6 7.4150 -8.0277 1.1292 22 6 6.2687 -7.3404 0.7156 23 8 5.0240 -7.9276 0.7429 24 6 5.0410 -9.3557 0.8693 25 6 6.0267 -9.7505 1.9739 26 8 7.3446 -9.3251 1.6016 27 6 4.2348 -2.2632 0.0965 28 1 -0.4850 0.8401 -0.0004 29 1 2.9910 0.3488 -1.7557 30 1 4.5585 0.3808 -0.9101 31 1 3.6989 -1.5785 -3.0903 32 1 4.9244 -0.2955 -3.2386 33 1 6.2779 -1.4008 -1.4667 34 1 6.0056 -2.4843 -2.8521 35 1 6.8215 -3.6543 -0.5627 36 1 9.5293 -7.6906 1.3082 37 1 5.3542 -9.8013 -0.0748 38 1 4.0435 -9.7115 1.1269 39 1 6.0162 -10.8330 2.1016 40 1 5.7385 -9.2706 2.9092 41 1 3.6838 -2.9767 0.7091 42 1 5.0116 -1.7877 0.6953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009062822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:08 Heat of formation + Delta-G solvation = -65.317135 kcal Electronic energy + Delta-G solvation = -27239.895601 eV Core-core repulsion = 23312.499139 eV Total energy + Delta-G solvation = -3927.396462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15275 -41.00046 -39.22402 -38.08601 -36.73111 -35.99832 -34.33781 -32.71541 -31.74012 -30.81681 -30.02302 -27.24575 -26.17805 -24.77517 -23.98607 -23.75453 -22.08315 -21.38823 -20.34805 -20.07307 -18.80904 -18.39842 -18.10570 -17.56151 -17.28469 -16.75473 -16.55134 -16.16434 -15.84997 -15.74400 -15.61652 -15.45064 -15.33141 -14.89974 -14.84332 -14.54574 -14.21713 -14.05663 -13.78001 -13.66520 -13.32003 -12.81186 -12.61321 -12.45274 -12.44929 -12.11898 -12.04445 -11.86988 -11.80651 -11.67757 -11.50435 -11.37214 -11.14518 -10.78959 -10.27868 -9.69058 -9.03522 -8.94180 -8.18641 -5.52959 -0.75270 0.25344 0.48191 1.04348 1.29820 1.41917 1.52724 1.99906 2.09406 2.22303 2.40805 2.45920 3.02004 3.07200 3.35264 3.52148 3.78673 3.88849 3.95324 4.01698 4.03999 4.08964 4.23788 4.31402 4.38664 4.41617 4.51251 4.57568 4.64477 4.68452 4.84762 4.91748 4.98481 5.03998 5.08002 5.19382 5.33533 5.50939 5.59756 5.82877 5.96901 6.09042 6.46395 6.88115 7.17233 7.58271 7.96061 9.01945 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.002924 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.984991 B = 9573.019592 C =10408.707102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.037 4.037 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.310 1.310 6 H -0.256 1.256 7 C -0.259 4.259 8 H 0.032 0.968 9 N -0.617 5.617 10 C 0.112 3.888 11 C -0.125 4.125 12 C -0.106 4.106 13 C 0.140 3.860 14 H 0.053 0.947 15 N -0.706 5.706 16 C 0.584 3.416 17 O -0.570 6.570 18 C -0.324 4.324 19 S 0.283 5.717 20 C -0.189 4.189 21 C 0.011 3.989 22 C 0.117 3.883 23 O -0.299 6.299 24 C 0.002 3.998 25 C 0.019 3.981 26 O -0.298 6.298 27 C 0.146 3.854 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.411 0.589 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.145 -16.920 -0.210 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.232 4.232 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.239 1.239 6 H -0.180 1.180 7 C -0.388 4.388 8 H 0.050 0.950 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.033 3.967 14 H 0.072 0.928 15 N -0.359 5.359 16 C 0.373 3.627 17 O -0.451 6.451 18 C -0.444 4.444 19 S 0.547 5.453 20 C -0.326 4.326 21 C -0.045 4.045 22 C 0.055 3.945 23 O -0.213 6.213 24 C -0.073 4.073 25 C -0.056 4.056 26 O -0.214 6.214 27 C 0.019 3.981 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.163 0.837 39 H 0.181 0.819 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 26.046 -15.861 -0.565 30.500 hybrid contribution -1.643 -0.732 0.719 1.937 sum 24.403 -16.593 0.154 29.511 Atomic orbital electron populations 1.70008 1.07787 1.27514 1.55294 1.26024 0.95961 1.01549 0.99646 0.85695 0.78633 0.78732 0.78076 1.19028 1.23900 1.18005 1.18768 0.87012 0.93315 1.39716 0.95022 1.44350 1.07503 1.34290 1.48040 1.21588 0.97246 0.91965 0.90398 1.21921 0.98021 0.99000 0.97541 1.21670 0.97953 0.95905 0.98877 1.21305 0.90120 0.89738 0.95492 0.92832 1.45702 1.11504 1.12490 1.66181 1.15999 0.87363 0.81908 0.77449 1.90904 1.20576 1.77742 1.55907 1.22598 1.01749 0.99187 1.20829 1.83614 0.91929 1.09106 1.60684 1.25480 1.02564 0.97328 1.07243 1.18292 0.92393 0.88221 1.05592 1.19358 0.86051 0.92563 0.96558 1.87167 1.23133 1.22963 1.88045 1.24079 1.04603 0.77906 1.00706 1.23862 0.80301 1.04673 0.96807 1.87037 1.30771 1.23058 1.80512 1.21261 0.92194 0.90172 0.94457 0.92760 0.93100 0.93521 0.93359 0.87999 0.89091 0.88930 0.75230 0.76591 0.89726 0.83733 0.81929 0.90518 0.95565 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.47 13.97 21.65 0.30 -63.17 16 2 C -0.04 -2.30 5.23 84.86 0.44 -1.86 16 3 Si 0.96 47.49 24.34 68.60 1.67 49.16 16 4 H -0.26 -11.96 6.62 99.48 0.66 -11.30 16 5 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 6 H -0.26 -11.89 6.64 99.48 0.66 -11.23 16 7 C -0.26 -16.04 10.03 84.03 0.84 -15.20 16 8 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 9 N -0.62 -31.14 2.77 -699.09 -1.94 -33.08 16 10 C 0.11 4.69 4.21 86.36 0.36 5.06 16 11 C -0.13 -3.99 6.08 30.67 0.19 -3.80 16 12 C -0.11 -2.81 5.35 30.62 0.16 -2.65 16 13 C 0.14 4.95 2.60 45.07 0.12 5.07 16 14 H 0.05 2.33 7.58 -2.39 -0.02 2.32 16 15 N -0.71 -20.58 5.07 -451.02 -2.29 -22.86 16 16 C 0.58 20.49 7.56 85.10 0.64 21.14 16 17 O -0.57 -26.61 15.52 11.69 0.18 -26.43 16 18 C -0.32 -8.89 6.25 22.87 0.14 -8.74 16 19 S 0.28 4.21 22.17 -56.49 -1.25 2.96 16 20 C -0.19 -2.68 11.17 66.90 0.75 -1.94 16 21 C 0.01 0.23 6.55 21.75 0.14 0.37 16 22 C 0.12 3.24 6.58 22.42 0.15 3.39 16 23 O -0.30 -9.17 9.60 -90.49 -0.87 -10.04 16 24 C 0.00 0.04 7.14 72.05 0.51 0.55 16 25 C 0.02 0.25 7.14 72.05 0.51 0.77 16 26 O -0.30 -5.40 10.77 -113.05 -1.22 -6.62 16 27 C 0.15 6.38 6.09 86.36 0.53 6.91 16 28 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 29 H 0.05 2.36 4.50 -2.38 -0.01 2.35 16 30 H 0.05 1.79 7.07 -2.39 -0.02 1.77 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.41 8.35 7.54 -92.71 -0.70 7.65 16 36 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.16 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.03 1.33 7.93 -2.39 -0.02 1.31 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -89.33 348.87 0.36 -88.97 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.27 Total: 12.04 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.50 Total: 9.06 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -3.92 Total: -119.11 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.90 Total: -43.09 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.25 Total: 2.96 kcal Total: -89.33 0.36 -88.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009062822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.652 kcal (2) G-P(sol) polarization free energy of solvation -89.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds